Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003971.1

Orthogroup ID

OG0009316

Physical Location & Seq

Genomic Coordinates Reverse (-)

14316 .. 16588

Gene Structure 2273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003971.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

atggccggagaaacccaattggcagaagcagcaaaaggtccaaacaagaggcgaatagggaagacgaaggggtctaaggccagaaagaaagcaaagaagatgccgcacgcatcggacggaagcagagccatgaagcccaagaagattgacccgaaaatgaagaagctttatcgaaaacgggccagagagtacgattcagaggaggagaaggaggaggagagtggtgggtctgaagaggaaggagaagaaaaagaggcggaagctaaggagaggcgtaaagcagaggaagggttctcggatgatgaggaagacgatgaagttcagccgggaattacgaaactttcagaggggtgcaatgcgtttaggttggctttcaggagcatagtcaagaagagtgttgctgacgatgtaatgggaccagtgttatcggggaacaagaagcttattgcagaaaagctggctgaagaggatgctgagcgcaaggtcaagggagaggctaaggaaaaacaattggtaatagaaaaggggcatgttgttaaacctgtcaactatgacccgcatgaaaagtttctaattagtcttgctactagaggagtggtcacattgttcaatgctgtcagcaaggcacagaatgctcagaaaggactggatccttccaggtttaaagatgcaaaagtgataagaaagcggaggaaagaagccttcttttcagagttgggcaaaactggtgcttctgcaaaggctcagacgtctaaaggctcagtggagaatgaagggcctgcctgggctccattgcgagataatttcatgctaacaaattccaagttgaaggactgggataaaatgacggagcaagttgggaaagatgacattggaaggatgtctgaagataatagtagttcggacgatgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rrp15p

Protein Analysis

304

Amino Acids

33.82

Weight (kDa)

9.0

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009316)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48240 AT5G48240 AT5G48240
fragaria_vesca	FvH4_6g40390 FvH4_6g40390
malus_domestica	MD09G1131700.v1.1 MD17G1119200.v1.1
prunus_persica	Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1 Prupe.3G194600_v2.0.a1
pyrus_communis	pycom09g05370 pycom17g10990
rosa_chinensis	RchiOBHm_Chr2g0155591
rosa_laevigata	RLG00000020848
rosa_multiflora	Rmu_sc0003971.1_g000004
rosa_roxburghii	Rroxscaffold_2G00093630
rosa_rugosa	Rorug02G0448400
rosa_samantha	Rh2AG514600 Rh2BG525400 Rh2CG499500 Rh2DG534300
rosa_wichuraiana	Rw2G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
AatII	GACGTC	1 cut(s)	752
AciI	CCGC	4 cut(s)	104, 257, 557, 688
AclWI	GGATC	2 cut(s)	644, 657
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	3 cut(s)	252, 483, 906
AcyI	GRCGYC	1 cut(s)	749
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	610, 829
AjnI	CCWGG	2 cut(s)	656, 782
AluBI	AGCT	4 cut(s)	166, 263, 442, 457
AluI	AGCT	4 cut(s)	166, 263, 442, 457
AlwI	GGATC	2 cut(s)	644, 657
AoxI	GGCC	4 cut(s)	3, 78, 180, 776
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	817
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	480
AspS9I	GGNCC	4 cut(s)	38, 180, 416, 776
AsuC2I	CCSGG	1 cut(s)	327
AvaII	GGWCC	2 cut(s)	38, 416
BamHI	GGATCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	790
BbsI	GAAGAC	2 cut(s)	68, 315
BbvI	GCAGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	658, 784
BcnI	CCSGG	1 cut(s)	327
BfaI	CTAG	1 cut(s)	588
BisI	GCNGC	2 cut(s)	30, 104
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	2 cut(s)	31, 105
Bme1390I	CCNGG	3 cut(s)	327, 658, 784
Bme18I	GGWCC	2 cut(s)	38, 416
BmgT120I	GGNCC	4 cut(s)	38, 180, 416, 776
BmiI	GGNNCC	3 cut(s)	417, 651, 789
BmrFI	CCNGG	3 cut(s)	327, 658, 784
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	4 cut(s)	90, 119, 460, 658
BmuI	ACTGGG	1 cut(s)	844
BpiI	GAAGAC	2 cut(s)	68, 315
Bpu10I	CCTNAGC	2 cut(s)	264, 498
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuMI	CCSGG	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	783
Bse1I	ACTGG	4 cut(s)	419, 651, 730, 839
Bse3DI	GCAATG	2 cut(s)	361, 791
BseBI	CCWGG	2 cut(s)	658, 784
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	3 cut(s)	304, 475, 885
BseMI	GCAATG	2 cut(s)	361, 791
BseMII	CTCAG	4 cut(s)	465, 650, 758, 774
BseNI	ACTGG	4 cut(s)	419, 651, 730, 839
BseRI	GAGGAG	5 cut(s)	215, 218, 227, 230, 606
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	4 cut(s)	5, 80, 182, 778
BsiSI	CCGG	2 cut(s)	6, 326
BslFI	GGGAC	1 cut(s)	429
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	637
BsnI	GGCC	4 cut(s)	5, 80, 182, 778
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp143I	GATC	1 cut(s)	649
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	4 cut(s)	104, 257, 557, 688
BspANI	GGCC	4 cut(s)	5, 80, 182, 778
BspCNI	CTCAG	4 cut(s)	466, 649, 757, 773
BspLI	GGNNCC	3 cut(s)	417, 651, 789
BspPI	GGATC	2 cut(s)	644, 657
BsrDI	GCAATG	2 cut(s)	361, 791
BsrI	ACTGG	4 cut(s)	419, 651, 730, 839
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	1 cut(s)	649
BssNI	GRCGYC	1 cut(s)	749
Bst2UI	CCWGG	2 cut(s)	658, 784
Bst6I	CTCTTC	3 cut(s)	228, 386, 459
BstACI	GRCGYC	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	3 cut(s)	108, 459, 780
BstDEI	CTNAG	7 cut(s)	75, 264, 474, 498, 636, 744, 760
BstF5I	GGATG	3 cut(s)	304, 475, 885
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	1 cut(s)	652
BstMBI	GATC	1 cut(s)	649
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 632
BstNI	CCWGG	2 cut(s)	658, 784
BstNSI	RCATGY	1 cut(s)	533
BstSCI	CCNGG	3 cut(s)	325, 656, 782
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	2 cut(s)	68, 315
BstX2I	RGATCY	1 cut(s)	649
BstYI	RGATCY	1 cut(s)	649
BsuRI	GGCC	4 cut(s)	5, 80, 182, 778
BtsCI	GGATG	3 cut(s)	304, 475, 885
BtsIMutI	CAGTG	2 cut(s)	426, 768
Cac8I	GCNNGC	3 cut(s)	108, 459, 780
CfoI	GCGC	1 cut(s)	480
Cfr13I	GGNCC	4 cut(s)	38, 180, 416, 776
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	4 cut(s)	130, 530, 560, 808
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	7 cut(s)	75, 264, 474, 498, 636, 744, 760
DpnI	GATC	1 cut(s)	651
DpnII	GATC	1 cut(s)	649
DraI	TTTAAA	1 cut(s)	664
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	228, 386, 459
EarI	CTCTTC	3 cut(s)	228, 386, 459
EciI	GGCGGA	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	790
Eco47I	GGWCC	2 cut(s)	38, 416
Eco57I	CTGAAG	3 cut(s)	252, 483, 906
EcoO109I	RGGNCCY	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	656, 782
EcoT38I	GRGCYC	1 cut(s)	790
FaeI	CATG	4 cut(s)	133, 533, 563, 811
FaiI	YATR	6 cut(s)	131, 383, 531, 552, 561, 809
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	4 cut(s)	129, 529, 559, 807
FauI	CCCGC	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	30, 104
FokI	GGATG	3 cut(s)	311, 482, 892
FriOI	GRGCYC	1 cut(s)	790
Fsp4HI	GCNGC	2 cut(s)	30, 104
FspBI	CTAG	1 cut(s)	588
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	2 cut(s)	30, 104
HaeIII	GGCC	4 cut(s)	5, 80, 182, 778
HapII	CCGG	2 cut(s)	6, 326
HhaI	GCGC	1 cut(s)	480
Hin1I	GRCGYC	1 cut(s)	749
Hin1II	CATG	4 cut(s)	133, 533, 563, 811
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	2 cut(s)	164, 440
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	2 cut(s)	6, 326
Hpy166II	GTNNAC	1 cut(s)	547
Hpy188III	TCNNGA	2 cut(s)	376, 388
Hpy8I	GTNNAC	1 cut(s)	547
HpyAV	CCTTC	9 cut(s)	61, 202, 233, 281, 663, 712, 767, 823, 870
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	4 cut(s)	354, 449, 671, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 632
HpyF3I	CTNAG	7 cut(s)	75, 264, 474, 498, 636, 744, 760
HpySE526I	ACGT	1 cut(s)	749
Hsp92I	GRCGYC	1 cut(s)	749
Hsp92II	CATG	4 cut(s)	133, 533, 563, 811
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	1 cut(s)	649
LmnI	GCTCC	3 cut(s)	378, 793, 850
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	4 cut(s)	90, 119, 460, 658
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	1 cut(s)	651
MboI	GATC	1 cut(s)	649
MfeI	CAATTG	2 cut(s)	17, 509
MflI	RGATCY	1 cut(s)	649
MhlI	GDGCHC	1 cut(s)	790
MluCI	AATT	6 cut(s)	17, 330, 509, 573, 802, 817
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	2 cut(s)	537, 663
MspI	CCGG	2 cut(s)	6, 326
MspR9I	CCNGG	3 cut(s)	327, 658, 784
MunI	CAATTG	2 cut(s)	17, 509
Mva1269I	GAATGC	1 cut(s)	637
MvaI	CCWGG	2 cut(s)	658, 784
MwoI	GCNNNNNNNGC	2 cut(s)	29, 632
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	649
NlaIII	CATG	4 cut(s)	133, 533, 563, 811
NlaIV	GGNNCC	3 cut(s)	417, 651, 789
NmuCI	GTSAC	1 cut(s)	598
NspI	RCATGY	1 cut(s)	533
PctI	GAATGC	1 cut(s)	637
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	31, 105
Psp6I	CCWGG	2 cut(s)	656, 782
PspGI	CCWGG	2 cut(s)	656, 782
PspN4I	GGNNCC	3 cut(s)	417, 651, 789
PspPI	GGNCC	4 cut(s)	38, 180, 416, 776
PsuI	RGATCY	1 cut(s)	649
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	537, 663
SatI	GCNGC	2 cut(s)	30, 104
Sau3AI	GATC	1 cut(s)	649
Sau96I	GGNCC	4 cut(s)	38, 180, 416, 776
ScrFI	CCNGG	3 cut(s)	327, 658, 784
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	4 cut(s)	90, 119, 460, 658
SinI	GGWCC	2 cut(s)	38, 416
Sse9I	AATT	6 cut(s)	17, 330, 509, 573, 802, 817
SsiI	CCGC	4 cut(s)	104, 257, 557, 688
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	3 cut(s)	325, 656, 782
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	1 cut(s)	172
TasI	AATT	6 cut(s)	17, 330, 509, 573, 802, 817
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	2 cut(s)	537, 663
Tru9I	TTAA	2 cut(s)	537, 663
TscAI	CASTG	2 cut(s)	426, 768
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	6 cut(s)	146, 173, 330, 576, 786, 796
TspGWI	ACGGA	2 cut(s)	132, 863
TspRI	CASTG	2 cut(s)	426, 768
VpaK11BI	GGWCC	2 cut(s)	38, 416
XapI	RAATTY	1 cut(s)	817
XceI	RCATGY	1 cut(s)	533
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	1 cut(s)	588
ZraI	GACGTC	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.