Rh2BG525400

Rrp15p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009316
Physical Location & Seq
Reverse (-)
73523805 .. 73526942
3138 bp
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UTR
Exon/CDS
Intron
Rh2BG525400.1

Sequence Viewer

Length: 708 bp
ATGGCCGGAGAAACCCAATTGGCAGAAGCAGCAAAAGGTCCAAACAAGAGGCGAATAGGGAAGACGAAGGGGTCTAAGGCCAGAAAGAAAGCAAAGAAGATGCCGCACGCGTCGGACGGAAGCAGAGCCATGAAGCCCAAGAAGATTGACCCGAAAATGAAGAAGCTTTATCGAAAACGGGCCAGAGAGTACGATTCAGAGGAGGAGAAGGAGGAGGAGAGTGGTGGGTCTGAAGAGGAAGGAGAAGAAAAAGAGGCGGAAGCTAAGGAGAGGCGTAAAGCAGAGGAAGGGTTCTCGGATGATGAGGAAGACGATGAAGTTCAGCCCGGAATTACGAAACTTTCAGAGGGGTGCAATGCGTTTAGGTTGGCTTTCAGGAGCATAGTCAAGAAGAGTGTTGCTGACGATGTAATGGGACCAGTGTTATCGGGGAACAAGAAGCTTATTGCAGAAAAGCTGGCTGAAGAGGATGCTGAGCGCAAGGTCAAGGGAGAGGCTAAGGAAAAACAATTGGTAATAGAAAAGGGGCATGTTGTTAAACCTGTCAACTATGACCCGCATGAAAAGTTTCTAATTAGTCTTGCTACTAGAGGAGTGGTCACATTGTTCAATGCTGTCAGCAAGGCACAGAATGCTCAGAAAGGACTGGATCCTTCCAGGTTTAAAGATGCAAAAGGTATGCTTCTAAGCACCAAAACTAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rrp15p

Protein Analysis

235

Amino Acids

26.13

Weight (kDa)

9.33

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp15p PF07890 121 - 219 1e-15 Rrp15p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AccII CGCG 1 cut(s) 110
AciI CCGC 3 cut(s) 104, 257, 557
AclWI GGATC 2 cut(s) 644, 657
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 702
AcuI CTGAAG 2 cut(s) 252, 483
AfaI GTAC 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 610
AjnI CCWGG 1 cut(s) 656
AluBI AGCT 4 cut(s) 166, 263, 442, 457
AluI AGCT 4 cut(s) 166, 263, 442, 457
AlwI GGATC 2 cut(s) 644, 657
AoxI GGCC 3 cut(s) 3, 78, 180
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 702
Asp700I GAANNNNTTC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 3 cut(s) 38, 180, 416
AsuC2I CCSGG 1 cut(s) 327
AvaII GGWCC 2 cut(s) 38, 416
BamHI GGATCC 1 cut(s) 649
BbsI GAAGAC 2 cut(s) 68, 315
BbvI GCAGC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 658
BcnI CCSGG 1 cut(s) 327
BfaI CTAG 2 cut(s) 588, 699
BisI GCNGC 2 cut(s) 30, 104
BlpI GCTNAGC 1 cut(s) 474
BlsI GCNGC 2 cut(s) 31, 105
Bme1390I CCNGG 2 cut(s) 327, 658
Bme18I GGWCC 2 cut(s) 38, 416
BmgT120I GGNCC 3 cut(s) 38, 180, 416
BmiI GGNNCC 2 cut(s) 417, 651
BmrFI CCNGG 2 cut(s) 327, 658
BmsI GCATC 3 cut(s) 90, 460, 658
BpiI GAAGAC 2 cut(s) 68, 315
Bpu10I CCTNAGC 2 cut(s) 264, 498
Bpu1102I GCTNAGC 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 419, 651
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 658
BseGI GGATG 2 cut(s) 304, 475
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 465, 650
BseNI ACTGG 2 cut(s) 419, 651
BseRI GAGGAG 5 cut(s) 215, 218, 227, 230, 606
BseXI GCAGC 1 cut(s) 41
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 3 cut(s) 5, 80, 182
BsiSI CCGG 2 cut(s) 6, 327
BslFI GGGAC 1 cut(s) 429
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 3 cut(s) 5, 80, 182
Bsp143I GATC 1 cut(s) 649
Bsp1720I GCTNAGC 1 cut(s) 474
BspACI CCGC 3 cut(s) 104, 257, 557
BspANI GGCC 3 cut(s) 5, 80, 182
BspCNI CTCAG 2 cut(s) 466, 649
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 417, 651
BspPI GGATC 2 cut(s) 644, 657
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 2 cut(s) 419, 651
BssMI GATC 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 658
Bst6I CTCTTC 3 cut(s) 228, 386, 459
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 108, 459
BstDEI CTNAG 6 cut(s) 75, 264, 474, 498, 636, 686
BstF5I GGATG 2 cut(s) 304, 475
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 652
BstMBI GATC 1 cut(s) 649
BstMWI GCNNNNNNNGC 2 cut(s) 29, 632
BstNI CCWGG 1 cut(s) 658
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 2 cut(s) 325, 656
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 2 cut(s) 68, 315
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 3 cut(s) 5, 80, 182
BtsCI GGATG 2 cut(s) 304, 475
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 2 cut(s) 108, 459
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 3 cut(s) 38, 180, 416
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 130, 530, 560
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 6 cut(s) 75, 264, 474, 498, 636, 686
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
DraI TTTAAA 1 cut(s) 664
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 228, 386, 459
EarI CTCTTC 3 cut(s) 228, 386, 459
EciI GGCGGA 1 cut(s) 272
Eco47I GGWCC 2 cut(s) 38, 416
Eco57I CTGAAG 2 cut(s) 252, 483
EcoRII CCWGG 1 cut(s) 656
FaeI CATG 3 cut(s) 133, 533, 563
FaiI YATR 6 cut(s) 131, 383, 531, 552, 561, 680
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 1 cut(s) 429
FatI CATG 3 cut(s) 129, 529, 559
FauI CCCGC 1 cut(s) 564
Fnu4HI GCNGC 2 cut(s) 30, 104
FokI GGATG 2 cut(s) 311, 482
Fsp4HI GCNGC 2 cut(s) 30, 104
FspBI CTAG 2 cut(s) 588, 699
GlaI GCGC 1 cut(s) 479
GluI GCNGC 2 cut(s) 30, 104
HaeIII GGCC 3 cut(s) 5, 80, 182
HapII CCGG 2 cut(s) 6, 327
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 480
Hin1II CATG 3 cut(s) 133, 533, 563
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 164, 440
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 6, 327
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 6 cut(s) 115, 199, 232, 298, 346, 639
Hpy188III TCNNGA 2 cut(s) 376, 388
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 1 cut(s) 115
HpyAV CCTTC 5 cut(s) 61, 202, 233, 281, 663
HpyCH4V TGCA 3 cut(s) 354, 449, 671
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 632
HpyF3I CTNAG 6 cut(s) 75, 264, 474, 498, 636, 686
Hsp92II CATG 3 cut(s) 133, 533, 563
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 1 cut(s) 378
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 3 cut(s) 90, 460, 658
MaeI CTAG 2 cut(s) 588, 699
MaeIII GTNAC 1 cut(s) 598
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MboII GAAGA 9 cut(s) 73, 109, 154, 172, 245, 257, 320, 403, 476
MfeI CAATTG 2 cut(s) 17, 509
MflI RGATCY 1 cut(s) 649
MluCI AATT 5 cut(s) 17, 330, 509, 573, 702
MluI ACGCGT 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 567
MseI TTAA 2 cut(s) 537, 663
MspI CCGG 2 cut(s) 6, 327
MspR9I CCNGG 2 cut(s) 327, 658
MunI CAATTG 2 cut(s) 17, 509
Mva1269I GAATGC 1 cut(s) 637
MvaI CCWGG 1 cut(s) 658
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 29, 632
NciI CCSGG 1 cut(s) 327
NdeII GATC 1 cut(s) 649
NlaIII CATG 3 cut(s) 133, 533, 563
NlaIV GGNNCC 2 cut(s) 417, 651
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 533
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 567
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 31, 105
Psp6I CCWGG 1 cut(s) 656
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 2 cut(s) 417, 651
PspPI GGNCC 3 cut(s) 38, 180, 416
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 537, 663
SatI GCNGC 2 cut(s) 30, 104
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 3 cut(s) 38, 180, 416
ScrFI CCNGG 2 cut(s) 327, 658
SfaNI GCATC 3 cut(s) 90, 460, 658
SinI GGWCC 2 cut(s) 38, 416
Sse9I AATT 5 cut(s) 17, 330, 509, 573, 702
SsiI CCGC 3 cut(s) 104, 257, 557
SspMI CTAG 2 cut(s) 588, 699
StyD4I CCNGG 2 cut(s) 325, 656
TaqI TCGA 1 cut(s) 172
TasI AATT 5 cut(s) 17, 330, 509, 573, 702
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 537, 663
Tru9I TTAA 2 cut(s) 537, 663
TscAI CASTG 1 cut(s) 426
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 4 cut(s) 146, 173, 330, 576
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 1 cut(s) 426
VpaK11BI GGWCC 2 cut(s) 38, 416
XapI RAATTY 1 cut(s) 702
XceI RCATGY 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 567
XspI CTAG 2 cut(s) 588, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.