Rh2CG499500

Rrp15p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009316
Physical Location & Seq
Reverse (-)
67175263 .. 67177786
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG499500.1

Sequence Viewer

Length: 771 bp
ATGGCCGGAGAAACCCAATTGGCGGAAGCAGCAAAAGGTCCAAACAAGAGGCGAATAGGGAAGACGAAGGGGTCTAAGGCCAGAAAGAAAGCAAAGAAGATGCCGCACGCGTCAGACGGCAGCAGAGCCATGAAGCCCAAGAAGATTGACCCGAAAATGAAGAAGCTTTATCGAAAACGGGCCAGAGAGTACGATTCAGAGGAGGAGAGTGGTGGGTCTGAAGAGGAAGGAGAAGAAAAAGAGGCGGAAGCTAAGGAGAGGCGTAAAGCAGAGGAAGGGTTCTCGGATGATGAGGAAGACGATGAAGTTCAGCCCGGAATTACGAAACTTTCAGAGGGGTGCAATGCGTTTAGGTTGGCTTTCAGGAGCATAATCAAGAAGAGTGTAGCTGACGATGTAATGGGACCAGTGTTATCGGGGAACAAGAAGCTTATTGCAGAAAAGCTGGCTGAAGAGGATGCTGAGCGCAAGGTCAAGGGAGAGGCTAAGGAAAAACAATTGGTAATAGAAAAGGGGCATGTTGTTAAACCTGTCAACTATGACCCGCATGAAAAGTTTCTAATTAGTCTTGCTACTAGAGGAGTGGTCACATTGTTCAATGCTGTCAGCAAGGCACAGAATGCTCAGAAAGGACTGGATCCTTCCAGGTTTAAAGATGCAAAAGTGATAAGAAAGCGGAGGAAAGAAGCCTTCTTTTCAGAGTTGGGCAAAACTAGTGCTTCTGCAAAGGTTTGCTTTTATGCTCCTTTTTCTAGTGACTTCATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rrp15p

Protein Analysis

256

Amino Acids

28.51

Weight (kDa)

9.49

Isoelectric Point (pI)

49.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rrp15p PF07890 117 - 235 6.6e-18 Rrp15p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 70
AccII CGCG 1 cut(s) 110
AciI CCGC 5 cut(s) 23, 104, 245, 545, 676
AclWI GGATC 2 cut(s) 632, 645
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 240, 471
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 1 cut(s) 598
AhlI ACTAGT 1 cut(s) 713
AjnI CCWGG 1 cut(s) 644
AluBI AGCT 5 cut(s) 166, 251, 389, 430, 445
AluI AGCT 5 cut(s) 166, 251, 389, 430, 445
AlwI GGATC 2 cut(s) 632, 645
AoxI GGCC 3 cut(s) 3, 78, 180
ApeKI GCWGC 2 cut(s) 29, 120
Asp700I GAANNNNTTC 1 cut(s) 555
AspLEI GCGC 1 cut(s) 468
AspS9I GGNCC 3 cut(s) 38, 180, 404
AsuC2I CCSGG 1 cut(s) 315
AvaII GGWCC 2 cut(s) 38, 404
BamHI GGATCC 1 cut(s) 637
BbsI GAAGAC 2 cut(s) 68, 303
BbvI GCAGC 2 cut(s) 41, 132
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 646
BcnI CCSGG 1 cut(s) 315
BcuI ACTAGT 1 cut(s) 713
BfaI CTAG 3 cut(s) 576, 714, 753
BisI GCNGC 3 cut(s) 30, 104, 121
BlpI GCTNAGC 1 cut(s) 462
BlsI GCNGC 3 cut(s) 31, 105, 122
Bme1390I CCNGG 2 cut(s) 315, 646
Bme18I GGWCC 2 cut(s) 38, 404
BmgT120I GGNCC 3 cut(s) 38, 180, 404
BmiI GGNNCC 2 cut(s) 405, 639
BmrFI CCNGG 2 cut(s) 315, 646
BmsI GCATC 3 cut(s) 90, 448, 646
BpiI GAAGAC 2 cut(s) 68, 303
Bpu10I CCTNAGC 2 cut(s) 252, 486
Bpu1102I GCTNAGC 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 407, 639
Bse3DI GCAATG 1 cut(s) 349
BseBI CCWGG 1 cut(s) 646
BseGI GGATG 2 cut(s) 292, 463
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 2 cut(s) 453, 638
BseNI ACTGG 2 cut(s) 407, 639
BseRI GAGGAG 3 cut(s) 215, 218, 594
BseXI GCAGC 2 cut(s) 41, 132
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 3 cut(s) 5, 80, 182
BsiSI CCGG 2 cut(s) 6, 315
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 625
BsnI GGCC 3 cut(s) 5, 80, 182
Bsp143I GATC 1 cut(s) 637
Bsp1720I GCTNAGC 1 cut(s) 462
BspACI CCGC 5 cut(s) 23, 104, 245, 545, 676
BspANI GGCC 3 cut(s) 5, 80, 182
BspCNI CTCAG 2 cut(s) 454, 637
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 2 cut(s) 405, 639
BspPI GGATC 2 cut(s) 632, 645
BsrDI GCAATG 1 cut(s) 349
BsrI ACTGG 2 cut(s) 407, 639
BssMI GATC 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 646
Bst6I CTCTTC 3 cut(s) 216, 374, 447
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 108, 447
BstDEI CTNAG 5 cut(s) 75, 252, 462, 486, 624
BstF5I GGATG 2 cut(s) 292, 463
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 1 cut(s) 468
BstKTI GATC 1 cut(s) 640
BstMBI GATC 1 cut(s) 637
BstMWI GCNNNNNNNGC 2 cut(s) 29, 620
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 313, 644
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 41, 132
BstV2I GAAGAC 2 cut(s) 68, 303
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 3 cut(s) 5, 80, 182
BtsCI GGATG 2 cut(s) 292, 463
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 108, 447
CfoI GCGC 1 cut(s) 468
Cfr13I GGNCC 3 cut(s) 38, 180, 404
CseI GACGC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 190
CviAII CATG 3 cut(s) 130, 518, 548
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 5 cut(s) 75, 252, 462, 486, 624
DpnI GATC 1 cut(s) 639
DpnII GATC 1 cut(s) 637
DraI TTTAAA 1 cut(s) 652
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 216, 374, 447
EarI CTCTTC 3 cut(s) 216, 374, 447
EciI GGCGGA 2 cut(s) 38, 260
Eco47I GGWCC 2 cut(s) 38, 404
Eco57I CTGAAG 2 cut(s) 240, 471
EcoRII CCWGG 1 cut(s) 644
FaeI CATG 3 cut(s) 133, 521, 551
FaiI YATR 6 cut(s) 131, 371, 519, 540, 549, 741
FalI AAGNNNNNCTT 2 cut(s) 719, 751
FaqI GGGAC 1 cut(s) 417
FatI CATG 3 cut(s) 129, 517, 547
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 3 cut(s) 30, 104, 121
FokI GGATG 2 cut(s) 299, 470
Fsp4HI GCNGC 3 cut(s) 30, 104, 121
FspBI CTAG 3 cut(s) 576, 714, 753
GlaI GCGC 1 cut(s) 467
GluI GCNGC 3 cut(s) 30, 104, 121
HaeIII GGCC 3 cut(s) 5, 80, 182
HapII CCGG 2 cut(s) 6, 315
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 468
Hin1II CATG 3 cut(s) 133, 521, 551
Hin6I GCGC 1 cut(s) 466
HinP1I GCGC 1 cut(s) 466
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HindIII AAGCTT 2 cut(s) 164, 428
HinfI GANTC 1 cut(s) 194
HpaII CCGG 2 cut(s) 6, 315
Hpy166II GTNNAC 1 cut(s) 535
Hpy188I TCNGA 7 cut(s) 115, 199, 220, 286, 334, 627, 700
Hpy188III TCNNGA 2 cut(s) 364, 376
Hpy8I GTNNAC 1 cut(s) 535
HpyAV CCTTC 5 cut(s) 61, 221, 269, 651, 700
HpyCH4V TGCA 4 cut(s) 342, 437, 659, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 620
HpyF3I CTNAG 5 cut(s) 75, 252, 462, 486, 624
Hsp92II CATG 3 cut(s) 133, 521, 551
HspAI GCGC 1 cut(s) 466
Kzo9I GATC 1 cut(s) 637
LmnI GCTCC 2 cut(s) 366, 748
Lsp1109I GCAGC 2 cut(s) 41, 132
LweI GCATC 3 cut(s) 90, 448, 646
MaeI CTAG 3 cut(s) 576, 714, 753
MaeIII GTNAC 2 cut(s) 586, 755
MalI GATC 1 cut(s) 639
MboI GATC 1 cut(s) 637
MboII GAAGA 9 cut(s) 73, 109, 154, 172, 233, 245, 308, 391, 464
MfeI CAATTG 2 cut(s) 17, 497
MflI RGATCY 1 cut(s) 637
MluCI AATT 4 cut(s) 17, 318, 497, 561
MluI ACGCGT 1 cut(s) 108
MroXI GAANNNNTTC 1 cut(s) 555
MseI TTAA 2 cut(s) 525, 651
MspI CCGG 2 cut(s) 6, 315
MspR9I CCNGG 2 cut(s) 315, 646
MunI CAATTG 2 cut(s) 17, 497
Mva1269I GAATGC 1 cut(s) 625
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 29, 620
NciI CCSGG 1 cut(s) 315
NdeII GATC 1 cut(s) 637
NlaIII CATG 3 cut(s) 133, 521, 551
NlaIV GGNNCC 2 cut(s) 405, 639
NmuCI GTSAC 2 cut(s) 586, 755
NspI RCATGY 1 cut(s) 521
PctI GAATGC 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 31, 105, 122
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 2 cut(s) 405, 639
PspPI GGNCC 3 cut(s) 38, 180, 404
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 525, 651
SatI GCNGC 3 cut(s) 30, 104, 121
Sau3AI GATC 1 cut(s) 637
Sau96I GGNCC 3 cut(s) 38, 180, 404
ScrFI CCNGG 2 cut(s) 315, 646
SfaNI GCATC 3 cut(s) 90, 448, 646
SinI GGWCC 2 cut(s) 38, 404
SpeI ACTAGT 1 cut(s) 713
Sse9I AATT 4 cut(s) 17, 318, 497, 561
SsiI CCGC 5 cut(s) 23, 104, 245, 545, 676
SspMI CTAG 3 cut(s) 576, 714, 753
StyD4I CCNGG 2 cut(s) 313, 644
TaqI TCGA 1 cut(s) 172
TasI AATT 4 cut(s) 17, 318, 497, 561
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 525, 651
Tru9I TTAA 2 cut(s) 525, 651
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 2 cut(s) 586, 755
TseI GCWGC 2 cut(s) 29, 120
Tsp45I GTSAC 2 cut(s) 586, 755
TspDTI ATGAA 5 cut(s) 146, 173, 318, 564, 751
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 38, 404
XceI RCATGY 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 555
XspI CTAG 3 cut(s) 576, 714, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.