Prupe.3G194600_v2.0.a1

Rrp15p

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0009316
Physical Location & Seq
Reverse (-)
20610237 .. 20613593
3357 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G194600.3

Sequence Viewer

Length: 960 bp
ATGGCCGAAGAAACCCATATGGCAGAAGCAGCTAGAGAACCAAGGAAGAGGAAAATTGGGAAGAAGAAGGGCTCCAAGGCTAAGAAGAAAGCAAAGATGTTACAGTCAGCGGAAAGCATTAGAGCCATGAAGCCTAAGAAGATTGACAAGAAAATGCAGAAACTGTATCGGAAACGAGCCCGAGACTACAATTCAGAGGACGAATCCGAACAAGACAACGCTACACCTTTGGGCAACAATGAGGACGAGCTGATTGGTGGGTCTTCTTCAGGAGAAGAAGCAGAGAAAGGTGGCGACCACAGTGAAAGGAATGTGGATAATGGGTTCTCAGATGATGAGGAGCACGGTGAGATTCTGCCCGGAATCATGAGATTTACGGAGGGTAGCAATGCGTTTAGGTTGGCATTCAGGAGTATAATAAAGAAGACTGTTCCTGAAGATGTATTGGGGCCGGTGTTGTCGGGGCAAAAGAAACTTGTTGCAGAGAAGCTTGCTGAAGAGGAGAATGAGCGCAAGGTCAAGGGTGAGGCTAAGAAGGAAAAACAATTGGTAATAGAAAAGGGGCATGTGAAGCCTGCCAACTATTTGGACTCGCATGAAAAGTTTCTAATTGGTGTTGCTACGAAAGGAGTGGTCAAGTTGTTCAATGCTGTCAACAAGGCACAAAATGCTCAGAAAGGACTGAATCCTTCCAAGTTTAAAGATGCAAAAGTGATAAAAAAGCGGAGAAAAGAAGCCTTCTTTTCGGAGTTGGGCAAAACGTCCTCCCGAGGTGCTAGTGCTTCTGCAAAGGCGCATACATCTAAAGGCCCGGTGGATGGTGAAGGGCCTGCCTGGGCTCCATTACAAGATAATTACATGCTCACAAATTCCAAGTTGAAGGACTGGGATAAGATGCCGGACACAGTTGTGGGAGATGACATTGGAAGAGTATCTGAAGATAGTTCTGATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rrp15p

Protein Analysis

320

Amino Acids

35.27

Weight (kDa)

9.2

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 724
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 868
AcuI CTGAAG 4 cut(s) 252, 456, 516, 957
AfiI CCNNNNNNNGG 1 cut(s) 818
AgsI TTSAA 2 cut(s) 646, 880
AjnI CCWGG 1 cut(s) 833
AleI CACNNNNGTG 1 cut(s) 908
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 3 cut(s) 32, 250, 490
AluI AGCT 3 cut(s) 32, 250, 490
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 1 cut(s) 177
AlwNI CAGNNNCTG 1 cut(s) 163
Ama87I CYCGRG 2 cut(s) 180, 768
AoxI GGCC 4 cut(s) 3, 449, 808, 827
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 868
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 2 cut(s) 513, 796
AspS9I GGNCC 3 cut(s) 449, 809, 827
AsuC2I CCSGG 2 cut(s) 360, 812
AsuHPI GGTGA 3 cut(s) 359, 536, 833
AvaI CYCGRG 2 cut(s) 180, 768
BanII GRGCYC 3 cut(s) 74, 181, 841
BbsI GAAGAC 2 cut(s) 255, 431
Bbv12I GWGCWC 1 cut(s) 345
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 812
BciT130I CCWGG 1 cut(s) 835
BcnI CCSGG 2 cut(s) 360, 812
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 2 cut(s) 33, 777
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 360, 812, 835
BmeT110I CYCGRG 2 cut(s) 180, 768
BmgT120I GGNCC 3 cut(s) 449, 809, 827
BmiI GGNNCC 3 cut(s) 73, 450, 840
BmrFI CCNGG 3 cut(s) 360, 812, 835
BmrI ACTGGG 1 cut(s) 895
BmsI GCATC 2 cut(s) 694, 885
BmuI ACTGGG 1 cut(s) 895
BpiI GAAGAC 2 cut(s) 255, 431
BpuMI CCSGG 2 cut(s) 360, 812
BsaJI CCNNGG 4 cut(s) 41, 75, 769, 834
Bsc4I CCNNNNNNNGG 1 cut(s) 818
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 890
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 4 cut(s) 41, 75, 769, 834
BseGI GGATG 1 cut(s) 823
BseLI CCNNNNNNNGG 1 cut(s) 818
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 2 cut(s) 342, 686
BseNI ACTGG 1 cut(s) 890
BseRI GAGGAG 2 cut(s) 353, 515
BseXI GCAGC 1 cut(s) 41
BshFI GGCC 4 cut(s) 5, 451, 810, 829
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 2 cut(s) 180, 768
BsiSI CCGG 4 cut(s) 360, 452, 812, 899
BslI CCNNNNNNNGG 1 cut(s) 818
BsmAI GTCTC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 4 cut(s) 5, 451, 810, 829
BsoBI CYCGRG 2 cut(s) 180, 768
Bsp1286I GDGCHC 4 cut(s) 74, 181, 345, 841
BspACI CCGC 2 cut(s) 110, 724
BspANI GGCC 4 cut(s) 5, 451, 810, 829
BspCNI CTCAG 2 cut(s) 341, 685
BspHI TCATGA 1 cut(s) 366
BspLI GGNNCC 3 cut(s) 73, 450, 840
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 1 cut(s) 890
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 4 cut(s) 41, 75, 769, 834
BssT1I CCWWGG 2 cut(s) 41, 75
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 6 cut(s) 105, 165, 302, 347, 430, 907
Bst6I CTCTTC 3 cut(s) 41, 492, 922
BstAPI GCANNNNNTGC 1 cut(s) 668
BstC8I GCNNGC 3 cut(s) 492, 576, 831
BstDEI CTNAG 5 cut(s) 81, 135, 328, 531, 672
BstF5I GGATG 1 cut(s) 823
BstHHI GCGC 2 cut(s) 513, 796
BstMAI GTCTC 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 29, 571, 668
BstNI CCWGG 1 cut(s) 835
BstNSI RCATGY 2 cut(s) 569, 862
BstSCI CCNGG 3 cut(s) 358, 810, 833
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 2 cut(s) 255, 431
BstXI CCANNNNNNTGG 1 cut(s) 586
BsuRI GGCC 4 cut(s) 5, 451, 810, 829
BtsCI GGATG 1 cut(s) 823
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 492, 576, 831
CaiI CAGNNNCTG 1 cut(s) 163
CciI TCATGA 1 cut(s) 366
CfoI GCGC 2 cut(s) 513, 796
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 3 cut(s) 449, 809, 827
CviAII CATG 5 cut(s) 127, 367, 566, 596, 859
DdeI CTNAG 5 cut(s) 81, 135, 328, 531, 672
DraI TTTAAA 1 cut(s) 700
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 41, 492, 922
EarI CTCTTC 3 cut(s) 41, 492, 922
Eco130I CCWWGG 2 cut(s) 41, 75
Eco24I GRGCYC 3 cut(s) 74, 181, 841
Eco57I CTGAAG 4 cut(s) 252, 456, 516, 957
Eco88I CYCGRG 2 cut(s) 180, 768
EcoO109I RGGNCCY 1 cut(s) 827
EcoRII CCWGG 1 cut(s) 833
EcoT14I CCWWGG 2 cut(s) 41, 75
EcoT38I GRGCYC 3 cut(s) 74, 181, 841
ErhI CCWWGG 2 cut(s) 41, 75
FaeI CATG 5 cut(s) 130, 370, 569, 599, 862
FaiI YATR 9 cut(s) 18, 20, 128, 368, 416, 567, 597, 798, 860
FatI CATG 5 cut(s) 126, 366, 565, 595, 858
FauNDI CATATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 830
FriOI GRGCYC 3 cut(s) 74, 181, 841
Fsp4HI GCNGC 1 cut(s) 30
FspBI CTAG 2 cut(s) 33, 777
GlaI GCGC 2 cut(s) 512, 795
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 4 cut(s) 5, 451, 810, 829
HapII CCGG 4 cut(s) 360, 452, 812, 899
HhaI GCGC 2 cut(s) 513, 796
Hin1II CATG 5 cut(s) 130, 370, 569, 599, 862
Hin6I GCGC 2 cut(s) 511, 794
HinP1I GCGC 2 cut(s) 511, 794
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 5 cut(s) 203, 352, 363, 590, 685
HpaII CCGG 4 cut(s) 360, 452, 812, 899
HphI GGTGA 3 cut(s) 359, 536, 833
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 8 cut(s) 171, 196, 208, 331, 675, 748, 937, 949
Hpy188III TCNNGA 5 cut(s) 270, 367, 409, 434, 768
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 6 cut(s) 61, 529, 699, 748, 818, 874
HpyCH4III ACNGT 6 cut(s) 105, 165, 302, 347, 430, 907
HpyCH4IV ACGT 1 cut(s) 761
HpyCH4V TGCA 4 cut(s) 157, 482, 707, 788
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 571, 668
HpyF3I CTNAG 5 cut(s) 81, 135, 328, 531, 672
HpySE526I ACGT 1 cut(s) 761
Hsp92II CATG 5 cut(s) 130, 370, 569, 599, 862
HspAI GCGC 2 cut(s) 511, 794
LmnI GCTCC 3 cut(s) 77, 340, 844
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 2 cut(s) 694, 885
MaeI CTAG 2 cut(s) 33, 777
MaeII ACGT 1 cut(s) 761
MaeIII GTNAC 1 cut(s) 99
MfeI CAATTG 1 cut(s) 545
MhlI GDGCHC 4 cut(s) 74, 181, 345, 841
MluCI AATT 6 cut(s) 54, 190, 545, 609, 853, 868
MlyI GAGTC 1 cut(s) 584
MnlI CCTC 9 cut(s) 42, 190, 235, 331, 373, 493, 520, 764, 775
MroXI GAANNNNTTC 1 cut(s) 603
MseI TTAA 2 cut(s) 699, 958
MslI CAYNNNNRTG 1 cut(s) 908
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 4 cut(s) 360, 452, 812, 899
MspR9I CCNGG 3 cut(s) 360, 812, 835
MunI CAATTG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 835
MwoI GCNNNNNNNGC 3 cut(s) 29, 571, 668
NciI CCSGG 2 cut(s) 360, 812
NdeI CATATG 1 cut(s) 18
NlaIII CATG 5 cut(s) 130, 370, 569, 599, 862
NlaIV GGNNCC 3 cut(s) 73, 450, 840
NspI RCATGY 2 cut(s) 569, 862
OliI CACNNNNGTG 1 cut(s) 908
PagI TCATGA 1 cut(s) 366
PctI GAATGC 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 4 cut(s) 203, 352, 363, 685
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 833
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 3 cut(s) 73, 450, 840
PspPI GGNCC 3 cut(s) 449, 809, 827
PstNI CAGNNNCTG 1 cut(s) 163
RseI CAYNNNNRTG 1 cut(s) 908
SaqAI TTAA 2 cut(s) 699, 958
SatI GCNGC 1 cut(s) 30
Sau96I GGNCC 3 cut(s) 449, 809, 827
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 3 cut(s) 360, 812, 835
SduI GDGCHC 4 cut(s) 74, 181, 345, 841
SetI ASST 9 cut(s) 34, 229, 252, 292, 401, 492, 519, 764, 775
SfaNI GCATC 2 cut(s) 694, 885
SmiMI CAYNNNNRTG 1 cut(s) 908
Sse9I AATT 6 cut(s) 54, 190, 545, 609, 853, 868
SsiI CCGC 2 cut(s) 110, 724
SspMI CTAG 2 cut(s) 33, 777
StyD4I CCNGG 3 cut(s) 358, 810, 833
StyI CCWWGG 2 cut(s) 41, 75
TaaI ACNGT 6 cut(s) 105, 165, 302, 347, 430, 907
TaiI ACGT 1 cut(s) 764
TasI AATT 6 cut(s) 54, 190, 545, 609, 853, 868
TfiI GAWTC 4 cut(s) 203, 352, 363, 685
Tru1I TTAA 2 cut(s) 699, 958
Tru9I TTAA 2 cut(s) 699, 958
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 143, 612
TspGWI ACGGA 1 cut(s) 392
TspRI CASTG 1 cut(s) 307
XapI RAATTY 1 cut(s) 868
XceI RCATGY 2 cut(s) 569, 862
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 2 cut(s) 33, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.