Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

20452487 .. 20454041

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGACTTCTTCAGTACTAACCCCAAGCTTAAAGCTTTTAGCTATGACGAATTCTTCCTCTTCGACCCTTTTTTGTATTCCTTCTATCTTCAACATCTCGTCCTCTGAATCTCACCGCTTCAATTTTTCCTTATCCTCACGACCCGTTAATCTCACACTCTCTCTCAAATCCAAAACTCTTCGTAACTCATCTCCTGTTGTTACTTTCGTTTCCCAAACTTCGAATTGGGCTGAGGAAGAAGAAGGTGAGGATGGAAGCATCGGAGGTACTTCAGTCACTGTAGATGAGAGTTTCGAGTCTGAAGACGGTGTTGGATTCCCGGAGCCACCGGAAGAGGCTAAATTATTCGTCGGAAACTTGCCGTACGATGTTGATAGTCAAGCTTTAGCTATGCTCTTTGAACAAGCTGGTACTGTTGAGATTTCAGAGGTTATATACAATAGGGACACTGATCAAAGTCGTGGATTTGGGTTTGTAACAATGAGTACAGTTGAAGAAGCAGAGAAAGCTGTTGAGAAGTTCAATAGTTTTGAAGTGAATGGGAGGCGTTTGACAGTAAACAGAGCAGCTCCAAGAGGATCAAGACCTGAACGACAACCTCGTGTATATGATGCTGCGTTTAGGATCTATGTTGGGAACCTGCCATGGGATGTGGATAGTGGTCGTTTGGAACGATTATTTAGCGAGCATGGGAAAGTAGTTGATGCCCGAGTGGTTTCTGATAGAGAGACAGGTCGTTCACGTGGGTTTGGGTTTGTTCAAATGTCGAATGAGAATGAAGTTAACGTTGCCATTGCTGCTCTTGATGGACAGAATTTGGAAGGCAGAGCAATTAAAGTGAACGTGGCTGAGGAACGAACAAGGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009631 GO:0009892 GO:0009894 GO:0009895 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0016020 GO:0016070 GO:0016553 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043487 GO:0043489 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055035 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902369

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

289

Amino Acids

31.87

Weight (kDa)

4.91

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	115 - 184	1.3e-20	RNA recognition motif
RRM_1	PF00076	209 - 279	2.9e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	648
AciI	CCGC	1 cut(s)	115
AclI	AACGTT	1 cut(s)	786
AclWI	GGATC	2 cut(s)	586, 632
AcsI	RAATTY	2 cut(s)	49, 814
AcuI	CTGAAG	2 cut(s)	255, 321
AcvI	CACGTG	1 cut(s)	743
AfaI	GTAC	5 cut(s)	15, 268, 365, 412, 487
AfiI	CCNNNNNNNGG	1 cut(s)	646
AgsI	TTSAA	7 cut(s)	91, 121, 401, 494, 523, 533, 761
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	8 cut(s)	27, 34, 41, 383, 389, 407, 509, 569
AluI	AGCT	8 cut(s)	27, 34, 41, 383, 389, 407, 509, 569
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	2 cut(s)	586, 632
AlwNI	CAGNNNCTG	1 cut(s)	278
Ama87I	CYCGRG	1 cut(s)	708
ApeKI	GCWGC	3 cut(s)	566, 614, 797
ApoI	RAATTY	2 cut(s)	49, 814
AsuC2I	CCSGG	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	104, 257
AsuII	TTCGAA	1 cut(s)	221
AvaI	CYCGRG	1 cut(s)	708
BaeI	ACNNNNGTAYC	2 cut(s)	258, 291
BauI	CACGAG	1 cut(s)	600
BbrPI	CACGTG	1 cut(s)	743
BbsI	GAAGAC	1 cut(s)	309
BbvCI	CCTCAGC	2 cut(s)	231, 849
BbvI	GCAGC	3 cut(s)	578, 601, 784
BccI	CCATC	2 cut(s)	245, 800
BceAI	ACGGC	1 cut(s)	346
BclI	TGATCA	1 cut(s)	451
BcnI	CCSGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	722
BfmI	CTRYAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	648
BisI	GCNGC	3 cut(s)	567, 615, 798
BlsI	GCNGC	3 cut(s)	568, 616, 799
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	320
BmeT110I	CYCGRG	1 cut(s)	708
BmiI	GGNNCC	2 cut(s)	324, 638
BmrFI	CCNGG	1 cut(s)	320
BmsI	GCATC	3 cut(s)	267, 601, 694
BpiI	GAAGAC	1 cut(s)	309
Bpu10I	CCTNAGC	2 cut(s)	231, 849
Bpu14I	TTCGAA	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	644
BsaWI	WCCGGW	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	646
Bse3DI	GCAATG	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	644
BseGI	GGATG	2 cut(s)	256, 655
BseLI	CCNNNNNNNGG	1 cut(s)	646
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	2 cut(s)	222, 840
BseXI	GCAGC	3 cut(s)	578, 601, 784
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	320, 329
BsiWI	CGTACG	1 cut(s)	363
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	646
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	708
Bsp119I	TTCGAA	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	451, 578, 624
Bsp19I	CCATGG	1 cut(s)	644
BspACI	CCGC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	223, 841
BspLI	GGNNCC	2 cut(s)	324, 638
BspMI	ACCTGC	1 cut(s)	648
BspPI	GGATC	2 cut(s)	586, 632
BspT104I	TTCGAA	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	792
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	3 cut(s)	451, 578, 624
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	1 cut(s)	644
Bst2BI	CACGAG	1 cut(s)	600
Bst4CI	ACNGT	5 cut(s)	280, 308, 415, 490, 556
Bst6I	CTCTTC	3 cut(s)	64, 183, 327
BstBAI	YACGTR	1 cut(s)	743
BstBI	TTCGAA	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	686
BstDEI	CTNAG	2 cut(s)	231, 849
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	2 cut(s)	256, 655
BstKTI	GATC	3 cut(s)	454, 581, 627
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	3 cut(s)	451, 578, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	506, 797
BstSCI	CCNGG	1 cut(s)	318
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	578, 601, 784
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	624
BstYI	RGATCY	1 cut(s)	624
BtgI	CCRYGG	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	256, 655
BtsIMutI	CAGTG	2 cut(s)	276, 447
BveI	ACCTGC	1 cut(s)	648
Cac8I	GCNNGC	1 cut(s)	686
CaiI	CAGNNNCTG	1 cut(s)	278
Csp6I	GTAC	5 cut(s)	14, 267, 364, 411, 486
CviAII	CATG	2 cut(s)	645, 689
CviQI	GTAC	5 cut(s)	14, 267, 364, 411, 486
DdeI	CTNAG	2 cut(s)	231, 849
DpnI	GATC	3 cut(s)	453, 580, 626
DpnII	GATC	3 cut(s)	451, 578, 624
Eam1104I	CTCTTC	3 cut(s)	64, 183, 327
EarI	CTCTTC	3 cut(s)	64, 183, 327
Eco130I	CCWWGG	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	255, 321
Eco72I	CACGTG	1 cut(s)	743
Eco88I	CYCGRG	1 cut(s)	708
EcoRI	GAATTC	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	644
FaeI	CATG	2 cut(s)	648, 692
FaiI	YATR	9 cut(s)	44, 392, 434, 436, 607, 609, 630, 646, 690
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	2 cut(s)	644, 688
FbaI	TGATCA	1 cut(s)	451
Fnu4HI	GCNGC	3 cut(s)	567, 615, 798
FokI	GGATG	2 cut(s)	263, 662
Fsp4HI	GCNGC	3 cut(s)	567, 615, 798
GluI	GCNGC	3 cut(s)	567, 615, 798
HapII	CCGG	2 cut(s)	320, 329
Hin1II	CATG	2 cut(s)	648, 692
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	3 cut(s)	25, 32, 381
HinfI	GANTC	3 cut(s)	107, 296, 315
HpaI	GTTAAC	1 cut(s)	784
HpaII	CCGG	2 cut(s)	320, 329
HphI	GGTGA	2 cut(s)	104, 257
Hpy166II	GTNNAC	4 cut(s)	559, 740, 784, 841
Hpy188I	TCNGA	6 cut(s)	106, 263, 301, 353, 427, 721
Hpy188III	TCNNGA	3 cut(s)	138, 582, 803
Hpy8I	GTNNAC	4 cut(s)	559, 740, 784, 841
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	90, 236, 815
HpyCH4III	ACNGT	5 cut(s)	280, 308, 415, 490, 556
HpyCH4IV	ACGT	3 cut(s)	742, 786, 843
HpyF10VI	GCNNNNNNNGC	2 cut(s)	506, 797
HpyF3I	CTNAG	2 cut(s)	231, 849
HpySE526I	ACGT	3 cut(s)	742, 786, 843
Hsp92II	CATG	2 cut(s)	648, 692
Ksp22I	TGATCA	1 cut(s)	451
KspAI	GTTAAC	1 cut(s)	784
Kzo9I	GATC	3 cut(s)	451, 578, 624
LmnI	GCTCC	2 cut(s)	322, 574
LpnPI	CCDG	7 cut(s)	207, 333, 342, 393, 600, 653, 717
Lsp1109I	GCAGC	3 cut(s)	578, 601, 784
LweI	GCATC	3 cut(s)	267, 601, 694
MaeII	ACGT	3 cut(s)	742, 786, 843
MaeIII	GTNAC	4 cut(s)	182, 199, 274, 475
MalI	GATC	3 cut(s)	453, 580, 626
MboI	GATC	3 cut(s)	451, 578, 624
MboII	GAAGA	9 cut(s)	45, 51, 79, 170, 248, 251, 314, 344, 506
MflI	RGATCY	1 cut(s)	624
MluCI	AATT	6 cut(s)	49, 121, 223, 341, 814, 831
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	292, 331
MseI	TTAA	4 cut(s)	29, 147, 783, 834
MspI	CCGG	2 cut(s)	320, 329
MspR9I	CCNGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	506, 797
NciI	CCSGG	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	644
NdeII	GATC	3 cut(s)	451, 578, 624
NlaIII	CATG	2 cut(s)	648, 692
NlaIV	GGNNCC	2 cut(s)	324, 638
NmuCI	GTSAC	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	3 cut(s)	598, 670, 862
PfeI	GAWTC	2 cut(s)	107, 315
Pfl23II	CGTACG	1 cut(s)	363
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	3 cut(s)	568, 616, 799
PleI	GAGTC	1 cut(s)	304
PmaCI	CACGTG	1 cut(s)	743
PmlI	CACGTG	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	743
Psp1406I	AACGTT	1 cut(s)	786
PspCI	CACGTG	1 cut(s)	743
PspLI	CGTACG	1 cut(s)	363
PspN4I	GGNNCC	2 cut(s)	324, 638
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	624
RsaI	GTAC	5 cut(s)	15, 268, 365, 412, 487
RsaNI	GTAC	5 cut(s)	14, 267, 364, 411, 486
SaqAI	TTAA	4 cut(s)	29, 147, 783, 834
SatI	GCNGC	3 cut(s)	567, 615, 798
Sau3AI	GATC	3 cut(s)	451, 578, 624
ScaI	AGTACT	1 cut(s)	15
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	320
SfaNI	GCATC	3 cut(s)	267, 601, 694
SfcI	CTRYAG	1 cut(s)	279
SfuI	TTCGAA	1 cut(s)	221
Sse9I	AATT	6 cut(s)	49, 121, 223, 341, 814, 831
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	318
StyI	CCWWGG	1 cut(s)	644
TaaI	ACNGT	5 cut(s)	280, 308, 415, 490, 556
TaiI	ACGT	3 cut(s)	745, 789, 846
TaqI	TCGA	4 cut(s)	62, 221, 294, 767
TasI	AATT	6 cut(s)	49, 121, 223, 341, 814, 831
TatI	WGTACW	2 cut(s)	13, 485
TfiI	GAWTC	2 cut(s)	107, 315
Tru1I	TTAA	4 cut(s)	29, 147, 783, 834
Tru9I	TTAA	4 cut(s)	29, 147, 783, 834
TscAI	CASTG	2 cut(s)	283, 454
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	566, 614, 797
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	792
TspRI	CASTG	2 cut(s)	283, 454
XapI	RAATTY	2 cut(s)	49, 814
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.