Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

26103421 .. 26105924

Gene Structure 2504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1167800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTGTGGCTTCTTCTGCAACTTCCAATCTATTCAAGACCTTATCGATGGCGGATTCATGCGTCTCCCTCCCTTACCTTTCCGCTGCCAAAACCTCCAACCCATTTCTCTCAGTTCCCTCCAAACCCATCAAGCTCCACCTCTCCTACACCCCTTCCTCGCTCTTCTCGCTGCCGCTGTCCCTCGGAAGAAAAACCCACTTCTCCTCCGTCGCCGCCTTTGTGGCCCAGACCTCGGACTGGGGTCAGGAAGACAGCACGCTCACCATTGACGGCGCGGAGGGAAGTGAGGAAGAAGGGGTCTTTGAGGAGAGTGAGGAGGTGTCGAATGTCGATCCTCCGGAGGAGGCCAAGGTGTTTGTTGGAAATTTGCCTTTTGATGTTGATAGTCAGAAATTGGCTGAGCTCTTTGAGAGGGCTGGAATCGTCGAGGTTGCTGAGGTTATTTACAACAGGGACACTGATCAGAGTCGTGGGTTTGGATTTGTGACCATGAGCACCGTTGAGGAAGCTGATAAGGCTGTGGAACTGTTCAGTCGTTATGATTTAAATGGAAGGCTCTTGACTGTCAACAGGGCTGCTCCAAGAGGAACACGCCAAGAACGCCCACCCCGTTCATTTGAATCTGCTTTTAGAATCTATGTCGGTAACCTGCCATGGAATGTGGATACTCCTCAACTGGAGCAGATTTTCAGTGAACATGGTAGCGTTGTGGAGGCTCGAGTAGTCTTTGACAGAGAAACTGGACGATCCCGTGGTTTTGGCTTTGTTACCATGGCCAGTGAAAGCGAAATGAATGATGCCATTGGTGCGCTCGATGGACAGAGTATCGATGGCAGGGCGATCAGAGTAAATGTTGCGGAAGAAAGACAAAGGCGCAGTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

297

Amino Acids

32.53

Weight (kDa)

4.74

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	119 - 188	2.1e-17	RNA recognition motif
RRM_1	PF00076	213 - 283	1.6e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	660
AccII	CGCG	1 cut(s)	278
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	6 cut(s)	53, 84, 176, 216, 278, 860
AclWI	GGATC	2 cut(s)	329, 744
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	235, 240
AgsI	TTSAA	2 cut(s)	37, 623
AluBI	AGCT	3 cut(s)	136, 406, 512
AluI	AGCT	3 cut(s)	136, 406, 512
Alw21I	GWGCWC	2 cut(s)	408, 500
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	329, 744
Ama87I	CYCGRG	1 cut(s)	720
Aor13HI	TCCGGA	1 cut(s)	340
AoxI	GGCC	3 cut(s)	225, 348, 777
ApeKI	GCWGC	3 cut(s)	86, 172, 578
ApoI	RAATTY	1 cut(s)	367
ArsI	GACNNNNNNTTYG	1 cut(s)	865
AspLEI	GCGC	3 cut(s)	278, 814, 879
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	720
BalI	TGGCCA	1 cut(s)	779
BanII	GRGCYC	1 cut(s)	408
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	2 cut(s)	408, 500
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	3 cut(s)	73, 159, 565
BccI	CCATC	4 cut(s)	43, 137, 812, 827
BceAI	ACGGC	1 cut(s)	289
BciVI	GTATCC	1 cut(s)	661
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	1 cut(s)	70
BfuAI	ACCTGC	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	661
BglI	GCCNNNNNGGC	1 cut(s)	224
BisI	GCNGC	5 cut(s)	87, 173, 176, 216, 579
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	5 cut(s)	88, 174, 177, 217, 580
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	1 cut(s)	226
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	790
BmuI	ACTGGG	1 cut(s)	250
BoxI	GACNNNNGTC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	438
Bpu1102I	GCTNAGC	1 cut(s)	402
Bsa29I	ATCGAT	2 cut(s)	47, 831
BsaJI	CCNNGG	6 cut(s)	184, 234, 351, 656, 754, 774
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 240
Bse1I	ACTGG	4 cut(s)	245, 684, 748, 780
BseAI	TCCGGA	1 cut(s)	340
BseCI	ATCGAT	2 cut(s)	47, 831
BseDI	CCNNGG	6 cut(s)	184, 234, 351, 656, 754, 774
BseLI	CCNNNNNNNGG	2 cut(s)	235, 240
BseMII	CTCAG	3 cut(s)	126, 393, 429
BseNI	ACTGG	4 cut(s)	245, 684, 748, 780
BseRI	GAGGAG	5 cut(s)	196, 323, 332, 359, 663
BseXI	GCAGC	3 cut(s)	73, 159, 565
Bsh1236I	CGCG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	227, 350, 779
BshVI	ATCGAT	2 cut(s)	47, 831
BsiHKAI	GWGCWC	2 cut(s)	408, 500
BsiHKCI	CYCGRG	1 cut(s)	720
BsiSI	CCGG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	166, 470
BslI	CCNNNNNNNGG	2 cut(s)	235, 240
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	166, 470
BsnI	GGCC	3 cut(s)	227, 350, 779
BsoBI	CYCGRG	1 cut(s)	720
Bsp1286I	GDGCHC	2 cut(s)	408, 500
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	334, 463, 749, 843
Bsp1720I	GCTNAGC	1 cut(s)	402
Bsp19I	CCATGG	2 cut(s)	656, 774
BspACI	CCGC	6 cut(s)	53, 84, 176, 216, 278, 860
BspANI	GGCC	3 cut(s)	227, 350, 779
BspCNI	CTCAG	3 cut(s)	125, 394, 430
BspDI	ATCGAT	2 cut(s)	47, 831
BspEI	TCCGGA	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	660
BspPI	GGATC	2 cut(s)	329, 744
BspQI	GCTCTTC	1 cut(s)	170
BsrI	ACTGG	4 cut(s)	245, 684, 748, 780
BssECI	CCNNGG	6 cut(s)	184, 234, 351, 656, 754, 774
BssMI	GATC	4 cut(s)	334, 463, 749, 843
BssT1I	CCWWGG	3 cut(s)	351, 656, 774
Bst4CI	ACNGT	3 cut(s)	502, 531, 568
Bst6I	CTCTTC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	3 cut(s)	112, 402, 438
BstDSI	CCRYGG	3 cut(s)	656, 754, 774
BstEII	GGTNACC	1 cut(s)	647
BstFNI	CGCG	1 cut(s)	278
BstHHI	GCGC	3 cut(s)	278, 814, 879
BstKTI	GATC	4 cut(s)	337, 466, 752, 846
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	334, 463, 749, 843
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 169, 224, 518, 603, 809
BstPAI	GACNNNNGTC	1 cut(s)	243
BstPI	GGTNACC	1 cut(s)	647
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	73, 159, 565
BstV2I	GAAGAC	1 cut(s)	258
Bsu15I	ATCGAT	2 cut(s)	47, 831
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	3 cut(s)	227, 350, 779
BsuTUI	ATCGAT	2 cut(s)	47, 831
BtgI	CCRYGG	3 cut(s)	656, 754, 774
BtsIMutI	CAGTG	3 cut(s)	459, 700, 787
BveI	ACCTGC	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	260
CfoI	GCGC	3 cut(s)	278, 814, 879
Cfr13I	GGNCC	1 cut(s)	226
ClaI	ATCGAT	2 cut(s)	47, 831
CseI	GACGC	1 cut(s)	52
CviAII	CATG	5 cut(s)	60, 493, 657, 701, 775
DdeI	CTNAG	3 cut(s)	112, 402, 438
DpnI	GATC	4 cut(s)	336, 465, 751, 845
DpnII	GATC	4 cut(s)	334, 463, 749, 843
DraI	TTTAAA	1 cut(s)	549
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	406
Eco130I	CCWWGG	3 cut(s)	351, 656, 774
Eco24I	GRGCYC	1 cut(s)	408
Eco53kI	GAGCTC	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	720
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	647
EcoT14I	CCWWGG	3 cut(s)	351, 656, 774
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	3 cut(s)	351, 656, 774
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	5 cut(s)	63, 496, 660, 704, 778
FaiI	YATR	7 cut(s)	61, 494, 543, 642, 658, 702, 776
FaqI	GGGAC	2 cut(s)	166, 470
FatI	CATG	5 cut(s)	59, 492, 656, 700, 774
FbaI	TGATCA	1 cut(s)	463
Fnu4HI	GCNGC	5 cut(s)	87, 173, 176, 216, 579
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	5 cut(s)	87, 173, 176, 216, 579
GlaI	GCGC	3 cut(s)	277, 813, 878
GluI	GCNGC	5 cut(s)	87, 173, 176, 216, 579
GsuI	CTGGAG	1 cut(s)	701
HaeIII	GGCC	3 cut(s)	227, 350, 779
HapII	CCGG	1 cut(s)	341
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	3 cut(s)	278, 814, 879
Hin1II	CATG	5 cut(s)	63, 496, 660, 704, 778
Hin6I	GCGC	3 cut(s)	276, 812, 877
HinP1I	GCGC	3 cut(s)	276, 812, 877
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HinfI	GANTC	5 cut(s)	56, 423, 469, 623, 636
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	571, 698
Hpy188I	TCNGA	5 cut(s)	188, 238, 393, 468, 848
Hpy188III	TCNNGA	4 cut(s)	37, 248, 341, 562
Hpy8I	GTNNAC	2 cut(s)	571, 698
Hpy99I	CGWCG	2 cut(s)	215, 431
HpyAV	CCTTC	3 cut(s)	165, 290, 549
HpyCH4III	ACNGT	3 cut(s)	502, 531, 568
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 169, 224, 518, 603, 809
HpyF3I	CTNAG	3 cut(s)	112, 402, 438
Hsp92II	CATG	5 cut(s)	63, 496, 660, 704, 778
HspAI	GCGC	3 cut(s)	276, 812, 877
Kpn2I	TCCGGA	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	334, 463, 749, 843
LguI	GCTCTTC	1 cut(s)	170
LmnI	GCTCC	3 cut(s)	141, 586, 682
Lsp1109I	GCAGC	3 cut(s)	73, 159, 565
LweI	GCATC	1 cut(s)	790
MaeIII	GTNAC	3 cut(s)	487, 647, 769
MalI	GATC	4 cut(s)	336, 465, 751, 845
MboI	GATC	4 cut(s)	334, 463, 749, 843
MboII	GAAGA	6 cut(s)	6, 157, 201, 263, 305, 875
MhlI	GDGCHC	2 cut(s)	408, 500
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	2 cut(s)	367, 395
MluNI	TGGCCA	1 cut(s)	779
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	2 cut(s)	123, 343
Mox20I	TGGCCA	1 cut(s)	779
MroI	TCCGGA	1 cut(s)	340
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	779
MspA1I	CMGCKG	2 cut(s)	86, 178
MspI	CCGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	6 cut(s)	17, 169, 224, 518, 603, 809
NcoI	CCATGG	2 cut(s)	656, 774
NdeII	GATC	4 cut(s)	334, 463, 749, 843
NlaIII	CATG	5 cut(s)	63, 496, 660, 704, 778
NmuCI	GTSAC	1 cut(s)	487
PaeR7I	CTCGAG	1 cut(s)	720
PciSI	GCTCTTC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	610
PfeI	GAWTC	4 cut(s)	56, 423, 623, 636
PkrI	GCNGC	5 cut(s)	88, 174, 177, 217, 580
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
PshAI	GACNNNNGTC	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	408
PspEI	GGTNACC	1 cut(s)	647
PspPI	GGNCC	1 cut(s)	226
PspXI	VCTCGAGB	1 cut(s)	720
SacI	GAGCTC	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	5 cut(s)	87, 173, 176, 216, 579
Sau3AI	GATC	4 cut(s)	334, 463, 749, 843
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	478
SduI	GDGCHC	2 cut(s)	408, 500
SfaNI	GCATC	1 cut(s)	790
Sfr274I	CTCGAG	1 cut(s)	720
SlaI	CTCGAG	1 cut(s)	720
SmiI	ATTTAAAT	1 cut(s)	549
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
Sse9I	AATT	2 cut(s)	367, 395
SsiI	CCGC	6 cut(s)	53, 84, 176, 216, 278, 860
SstI	GAGCTC	1 cut(s)	408
StyI	CCWWGG	3 cut(s)	351, 656, 774
SwaI	ATTTAAAT	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	502, 531, 568
TaqI	TCGA	7 cut(s)	47, 326, 333, 429, 721, 816, 831
TasI	AATT	2 cut(s)	367, 395
TauI	GCSGC	2 cut(s)	178, 218
TfiI	GAWTC	4 cut(s)	56, 423, 623, 636
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	3 cut(s)	466, 700, 787
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	3 cut(s)	86, 172, 578
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	3 cut(s)	48, 606, 809
TspGWI	ACGGA	1 cut(s)	199
TspRI	CASTG	3 cut(s)	466, 700, 787
XapI	RAATTY	1 cut(s)	367
XhoI	CTCGAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.