Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

14225058 .. 14227897

Gene Structure 2840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTTCTGCAACCTCAAATTTGTTCAAGACCTTGTCAATAGCAGACTCATGTCTAGTCTCTTTACCCTACCTCTCCTCGACCAAAACCGCCAACTCGTTTCTCTCAATCCCATCCAAACCCATTAAACTCCACCTCACGTACACTCATGCTTCACACTTTTCACCACCTCTGTCCCTCAAGAACAAAACCCAGTTCTCATCCATAGTCTCTTTTGTGGCCCAGACCTCAGACTGGGCTCAGCAAGAAGAAGACAGCACACTTACCATTGACCAAGACGAAGGAGCAGAGAGTGGTGAAGAAGGGGTCTTTGCAGAGAGGGAAGAGGAGGCGAATGTTGAGCCACCTGAGGAAGCCAAGGTATTTGTTGGGAATTTGCCTTATGATGTTGATAGTCAGAAATTGGCTGAGCTCTTTGAGAGGGCTGGAGTTGTGGAGATTGCAGAGGTCATTTACAACAGGGATACTGAGCAGAGTCGTGGATTTGGATTTGTGACTATGAGCACTGTTGAAGAAGCTGATAAGGCTGTGGAACTGTTCAGTCGTTATGATTTAAATGGAAGGCTCTTGACTGTCAATAGGGCTGCTCCAAGAGGAACACGCCAAGAACGCACACCCCGTTCATTTGAACCTTCTTTTAGAATCTATGTTGGTAACCTTCCATGGAATGTGGATAATGGTCAACTGGAGCAGGTCTTCAGTGAGCATGGTAGCGTGGTGGAGGCACGAGTAGTCTTTGACAGAGAAACTGGACGGTCGCGTGGTTTTGGCTTTGTAACAATGGCCAGTGAAAACGAAATGAATGATGCCATTGCTGCTCTAGATGGACAGAGTCTGGATGGAAGGGCGATCAGAGTAAATGTTGCGGAAGAAAGACAAAGGCGCAGCCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

299

Amino Acids

33.14

Weight (kDa)

4.78

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	682
AccII	CGCG	1 cut(s)	760
AciI	CCGC	2 cut(s)	90, 866
AcoI	YGGCCR	1 cut(s)	783
AcsI	RAATTY	2 cut(s)	19, 373
AcuI	CTGAAG	1 cut(s)	682
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	3 cut(s)	28, 512, 629
AluBI	AGCT	2 cut(s)	412, 518
AluI	AGCT	2 cut(s)	412, 518
Alw21I	GWGCWC	2 cut(s)	414, 506
Alw26I	GTCTC	2 cut(s)	64, 214
AlwNI	CAGNNNCTG	1 cut(s)	835
AoxI	GGCC	2 cut(s)	219, 783
ApeKI	GCWGC	3 cut(s)	584, 815, 885
ApoI	RAATTY	2 cut(s)	19, 373
AspLEI	GCGC	1 cut(s)	885
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	156, 308
AxyI	CCTNAGG	1 cut(s)	348
BalI	TGGCCA	1 cut(s)	785
BanII	GRGCYC	2 cut(s)	241, 414
BauI	CACGAG	1 cut(s)	726
BbsI	GAAGAC	2 cut(s)	258, 688
Bbv12I	GWGCWC	2 cut(s)	414, 506
BbvI	GCAGC	2 cut(s)	571, 802
BccI	CCATC	3 cut(s)	121, 818, 833
BciVI	GTATCC	1 cut(s)	457
BcoDI	GTCTC	2 cut(s)	64, 214
BfaI	CTAG	2 cut(s)	56, 821
BfuAI	ACCTGC	1 cut(s)	682
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	585, 816, 886
BlpI	GCTNAGC	2 cut(s)	240, 408
BlsI	GCNGC	3 cut(s)	586, 817, 887
BmgT120I	GGNCC	1 cut(s)	220
BmrI	ACTGGG	2 cut(s)	187, 244
BmsI	GCATC	1 cut(s)	796
BmuI	ACTGGG	2 cut(s)	187, 244
BoxI	GACNNNNGTC	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	258, 688
BpmI	CTGGAG	2 cut(s)	447, 707
Bpu1102I	GCTNAGC	2 cut(s)	240, 408
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	357, 662
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	5 cut(s)	193, 239, 690, 754, 786
Bse21I	CCTNAGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	810
BseDI	CCNNGG	2 cut(s)	357, 662
BseGI	GGATG	3 cut(s)	113, 200, 844
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	810
BseMII	CTCAG	5 cut(s)	243, 254, 339, 399, 459
BseNI	ACTGG	5 cut(s)	193, 239, 690, 754, 786
BseRI	GAGGAG	2 cut(s)	67, 341
BseXI	GCAGC	2 cut(s)	571, 802
Bsh1236I	CGCG	1 cut(s)	760
Bsh1285I	CGRYCG	1 cut(s)	758
BshFI	GGCC	2 cut(s)	221, 785
BsiEI	CGRYCG	1 cut(s)	758
BsiHKAI	GWGCWC	2 cut(s)	414, 506
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	64, 214
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	221, 785
Bsp1286I	GDGCHC	3 cut(s)	241, 414, 506
Bsp143I	GATC	1 cut(s)	849
Bsp1720I	GCTNAGC	2 cut(s)	240, 408
Bsp19I	CCATGG	1 cut(s)	662
BspACI	CCGC	2 cut(s)	90, 866
BspANI	GGCC	2 cut(s)	221, 785
BspCNI	CTCAG	5 cut(s)	242, 253, 340, 400, 460
BspFNI	CGCG	1 cut(s)	760
BspMI	ACCTGC	1 cut(s)	682
BsrDI	GCAATG	1 cut(s)	810
BsrI	ACTGG	5 cut(s)	193, 239, 690, 754, 786
BssECI	CCNNGG	2 cut(s)	357, 662
BssMI	GATC	1 cut(s)	849
BssSI	CACGAG	1 cut(s)	726
BssT1I	CCWWGG	2 cut(s)	357, 662
Bst2BI	CACGAG	1 cut(s)	726
Bst4CI	ACNGT	4 cut(s)	508, 537, 574, 756
Bst6I	CTCTTC	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	141
BstDEI	CTNAG	5 cut(s)	229, 240, 348, 408, 468
BstDSI	CCRYGG	1 cut(s)	662
BstEII	GGTNACC	1 cut(s)	653
BstF5I	GGATG	3 cut(s)	113, 200, 844
BstFNI	CGCG	1 cut(s)	760
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	1 cut(s)	852
BstMAI	GTCTC	2 cut(s)	64, 214
BstMBI	GATC	1 cut(s)	849
BstMCI	CGRYCG	1 cut(s)	758
BstMWI	GCNNNNNNNGC	3 cut(s)	524, 609, 815
BstPAI	GACNNNNGTC	1 cut(s)	51
BstPI	GGTNACC	1 cut(s)	653
BstUI	CGCG	1 cut(s)	760
BstV1I	GCAGC	2 cut(s)	571, 802
BstV2I	GAAGAC	2 cut(s)	258, 688
Bsu36I	CCTNAGG	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	221, 785
BtgI	CCRYGG	1 cut(s)	662
BtsCI	GGATG	3 cut(s)	113, 200, 844
BtsIMutI	CAGTG	3 cut(s)	504, 706, 793
BveI	ACCTGC	1 cut(s)	682
CaiI	CAGNNNCTG	1 cut(s)	835
CfoI	GCGC	1 cut(s)	885
Cfr13I	GGNCC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	4 cut(s)	51, 149, 663, 707
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	5 cut(s)	229, 240, 348, 408, 468
DpnI	GATC	1 cut(s)	851
DpnII	GATC	1 cut(s)	849
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	783
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	412
Eco130I	CCWWGG	2 cut(s)	357, 662
Eco24I	GRGCYC	2 cut(s)	241, 414
Eco53kI	GAGCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	682
Eco81I	CCTNAGG	1 cut(s)	348
Eco91I	GGTNACC	1 cut(s)	653
EcoICRI	GAGCTC	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	653
EcoT14I	CCWWGG	2 cut(s)	357, 662
EcoT38I	GRGCYC	2 cut(s)	241, 414
ErhI	CCWWGG	2 cut(s)	357, 662
FaeI	CATG	4 cut(s)	54, 152, 666, 710
FaiI	YATR	9 cut(s)	52, 150, 206, 384, 500, 549, 648, 664, 708
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	4 cut(s)	50, 148, 662, 706
Fnu4HI	GCNGC	3 cut(s)	585, 816, 886
FokI	GGATG	3 cut(s)	100, 187, 851
FriOI	GRGCYC	2 cut(s)	241, 414
Fsp4HI	GCNGC	3 cut(s)	585, 816, 886
FspBI	CTAG	2 cut(s)	56, 821
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	3 cut(s)	585, 816, 886
GsuI	CTGGAG	2 cut(s)	447, 707
HaeIII	GGCC	2 cut(s)	221, 785
HhaI	GCGC	1 cut(s)	885
Hin1II	CATG	4 cut(s)	54, 152, 666, 710
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HincII	GTYRAC	1 cut(s)	683
HindII	GTYRAC	1 cut(s)	683
HinfI	GANTC	4 cut(s)	47, 475, 642, 832
HphI	GGTGA	2 cut(s)	156, 308
Hpy166II	GTNNAC	2 cut(s)	144, 683
Hpy188I	TCNGA	3 cut(s)	232, 399, 854
Hpy188III	TCNNGA	5 cut(s)	28, 181, 568, 821, 836
Hpy8I	GTNNAC	2 cut(s)	144, 683
HpyAV	CCTTC	6 cut(s)	275, 296, 555, 642, 668, 837
HpyCH4III	ACNGT	4 cut(s)	508, 537, 574, 756
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	3 cut(s)	11, 314, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	524, 609, 815
HpyF3I	CTNAG	5 cut(s)	229, 240, 348, 408, 468
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	4 cut(s)	54, 152, 666, 710
HspAI	GCGC	1 cut(s)	883
Kzo9I	GATC	1 cut(s)	849
LmnI	GCTCC	3 cut(s)	284, 592, 688
Lsp1109I	GCAGC	2 cut(s)	571, 802
LweI	GCATC	1 cut(s)	796
MaeI	CTAG	2 cut(s)	56, 821
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	3 cut(s)	493, 653, 775
MalI	GATC	1 cut(s)	851
MboI	GATC	1 cut(s)	849
MboII	GAAGA	7 cut(s)	260, 263, 311, 335, 524, 688, 881
MhlI	GDGCHC	3 cut(s)	241, 414, 506
MlsI	TGGCCA	1 cut(s)	785
MluCI	AATT	3 cut(s)	19, 373, 401
MluNI	TGGCCA	1 cut(s)	785
MlyI	GAGTC	3 cut(s)	41, 484, 841
Mox20I	TGGCCA	1 cut(s)	785
MscI	TGGCCA	1 cut(s)	785
MseI	TTAA	2 cut(s)	126, 554
Msp20I	TGGCCA	1 cut(s)	785
MvnI	CGCG	1 cut(s)	760
MwoI	GCNNNNNNNGC	3 cut(s)	524, 609, 815
NcoI	CCATGG	1 cut(s)	662
NdeII	GATC	1 cut(s)	849
NlaIII	CATG	4 cut(s)	54, 152, 666, 710
NmuCI	GTSAC	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	616
PfeI	GAWTC	1 cut(s)	642
PflFI	GACNNNGTC	2 cut(s)	34, 831
PkrI	GCNGC	3 cut(s)	586, 817, 887
PleI	GAGTC	3 cut(s)	41, 483, 840
PpsI	GAGTC	3 cut(s)	41, 483, 840
Ppu21I	YACGTR	1 cut(s)	141
PshAI	GACNNNNGTC	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	414
PspEI	GGTNACC	1 cut(s)	653
PspPI	GGNCC	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	835
PsyI	GACNNNGTC	2 cut(s)	34, 831
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	1 cut(s)	414
SaqAI	TTAA	2 cut(s)	126, 554
SatI	GCNGC	3 cut(s)	585, 816, 886
Sau3AI	GATC	1 cut(s)	849
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	3 cut(s)	41, 484, 841
SduI	GDGCHC	3 cut(s)	241, 414, 506
SfaNI	GCATC	1 cut(s)	796
SmiI	ATTTAAAT	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	3 cut(s)	19, 373, 401
SsiI	CCGC	2 cut(s)	90, 866
SspMI	CTAG	2 cut(s)	56, 821
SstI	GAGCTC	1 cut(s)	414
StyI	CCWWGG	2 cut(s)	357, 662
SwaI	ATTTAAAT	1 cut(s)	555
TaaI	ACNGT	4 cut(s)	508, 537, 574, 756
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	80
TasI	AATT	3 cut(s)	19, 373, 401
TfiI	GAWTC	1 cut(s)	642
Tru1I	TTAA	2 cut(s)	126, 554
Tru9I	TTAA	2 cut(s)	126, 554
TscAI	CASTG	3 cut(s)	511, 706, 793
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	3 cut(s)	584, 815, 885
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	612, 815
TspRI	CASTG	3 cut(s)	511, 706, 793
Tth111I	GACNNNGTC	2 cut(s)	34, 831
XapI	RAATTY	2 cut(s)	19, 373
XbaI	TCTAGA	1 cut(s)	820
XspI	CTAG	2 cut(s)	56, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.