Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

30276409 .. 30279198

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1162000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCTATGGCTTCTTCTGCAACTTCCAATATATTCAAGACCTTATCAATGGCGGATTCATGCCTAGTCTCCCTCCCTTACCTCTCCGCCGCCAAAACCACCAACCCATTTCTCTCAATTCCCTCCAAACCCATCAAGCTCCACCTCTCCTACACTCCTTCCTCGTTCTTCTCGCCGCCGCTGTCCATCGGGAACAAACCCCACTTCTCCTCCGTCGTCGCCTTCGTGGCCCAGACCTCGGACTGGGGACAAGAGGACAACACGCTCACCATTGACGGCGCGGAGGGCAGCGAGGAAGGAGGGGTCTTTGAGGAGAGAGAGGAGGAGTCGAACGTCGAGCCACCGGAGGAGGCCAAGGTGTTTGTTGGGAATTTACCTTTTGACGTTGATAGTCAGAAATTGGCTGAGCTTTTTGAGAGGGCTGGAATTGTCGAGGTTGCTGAGGTTATTTACAACAGGGACACTGATCAGAGTCGCGGGTTTGGATTTGTGACTATGAGCACTGTTGAGGAAGCTGATAAGGCCGTGGAACTCTACAGTCGTTATGATTTAAATGGAAGGCTCTTGACTGTCAATAGGGCTGCCCCAAGAGGAACACGCCAAGAACGCCCACCCCGTTCATTTGGGTCTGCTTTTAGAATCTATGTTGGTAACCTCCCATGGAATGTGGATACTCCTCAACTGGAGCAGATTTTCAGTGAACATGGTAGCGTTGTGGAGGCTCGAGTAGTCTTTGACAGAGAAACTGGACGATCCCGTGGTTTTGGCTTTGTAACAATGGCCAGTGAAAGCGAAATGAATGATGCCATTGGTGCACTCGATGGACAGAGTATCGACGGGAGGGCGATCAGAGTAAATGTTGCAGAAGAAAGACAAAGGCGCAGTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

298

Amino Acids

32.71

Weight (kDa)

4.79

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	120 - 189	1.2e-17	RNA recognition motif
RRM_1	PF00076	214 - 284	1.6e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	281, 477
AciI	CCGC	7 cut(s)	53, 87, 90, 176, 179, 281, 477
AclWI	GGATC	1 cut(s)	747
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	238, 243
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	3 cut(s)	139, 409, 515
AluI	AGCT	3 cut(s)	139, 409, 515
Alw21I	GWGCWC	2 cut(s)	503, 817
Alw26I	GTCTC	1 cut(s)	73
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	1 cut(s)	747
Ama87I	CYCGRG	1 cut(s)	723
AoxI	GGCC	4 cut(s)	228, 351, 522, 780
ApaLI	GTGCAC	1 cut(s)	813
ApeKI	GCWGC	2 cut(s)	288, 581
ApoI	RAATTY	1 cut(s)	370
ArsI	GACNNNNNNTTYG	1 cut(s)	868
AspLEI	GCGC	2 cut(s)	281, 882
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	259
AvaI	CYCGRG	1 cut(s)	723
BaeGI	GKGCMC	1 cut(s)	817
BalI	TGGCCA	1 cut(s)	782
Bbv12I	GWGCWC	2 cut(s)	503, 817
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	300, 568
BccI	CCATC	3 cut(s)	140, 194, 815
BceAI	ACGGC	2 cut(s)	292, 509
BciVI	GTATCC	1 cut(s)	664
BclI	TGATCA	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	664
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	5 cut(s)	90, 176, 179, 289, 582
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	5 cut(s)	91, 177, 180, 290, 583
BmeT110I	CYCGRG	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	793
BmuI	ACTGGG	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	441
Bpu1102I	GCTNAGC	1 cut(s)	405
BsaJI	CCNNGG	5 cut(s)	237, 354, 525, 659, 757
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 243
Bse1I	ACTGG	4 cut(s)	248, 687, 751, 783
BseDI	CCNNGG	5 cut(s)	237, 354, 525, 659, 757
BseLI	CCNNNNNNNGG	2 cut(s)	238, 243
BseMII	CTCAG	2 cut(s)	396, 432
BseNI	ACTGG	4 cut(s)	248, 687, 751, 783
BseRI	GAGGAG	6 cut(s)	199, 326, 335, 338, 362, 666
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	2 cut(s)	300, 568
Bsh1236I	CGCG	2 cut(s)	281, 477
BshFI	GGCC	4 cut(s)	230, 353, 524, 782
BsiHKAI	GWGCWC	2 cut(s)	503, 817
BsiHKCI	CYCGRG	1 cut(s)	723
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	2 cut(s)	261, 473
BslI	CCNNNNNNNGG	2 cut(s)	238, 243
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	2 cut(s)	261, 473
BsnI	GGCC	4 cut(s)	230, 353, 524, 782
BsoBI	CYCGRG	1 cut(s)	723
Bsp1286I	GDGCHC	2 cut(s)	503, 817
Bsp143I	GATC	3 cut(s)	466, 752, 846
Bsp1720I	GCTNAGC	1 cut(s)	405
Bsp19I	CCATGG	1 cut(s)	659
BspACI	CCGC	7 cut(s)	53, 87, 90, 176, 179, 281, 477
BspANI	GGCC	4 cut(s)	230, 353, 524, 782
BspCNI	CTCAG	2 cut(s)	397, 433
BspFNI	CGCG	2 cut(s)	281, 477
BspPI	GGATC	1 cut(s)	747
BsrI	ACTGG	4 cut(s)	248, 687, 751, 783
BssECI	CCNNGG	5 cut(s)	237, 354, 525, 659, 757
BssMI	GATC	3 cut(s)	466, 752, 846
BssT1I	CCWWGG	2 cut(s)	354, 659
Bst4CI	ACNGT	3 cut(s)	505, 539, 571
BstDEI	CTNAG	2 cut(s)	405, 441
BstDSI	CCRYGG	3 cut(s)	525, 659, 757
BstEII	GGTNACC	1 cut(s)	650
BstFNI	CGCG	2 cut(s)	281, 477
BstHHI	GCGC	2 cut(s)	281, 882
BstKTI	GATC	3 cut(s)	469, 755, 849
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	466, 752, 846
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 227, 285, 521, 606, 812
BstPI	GGTNACC	1 cut(s)	650
BstSFI	CTRYAG	1 cut(s)	535
BstSLI	GKGCMC	1 cut(s)	817
BstUI	CGCG	2 cut(s)	281, 477
BstV1I	GCAGC	2 cut(s)	300, 568
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	4 cut(s)	230, 353, 524, 782
BtgI	CCRYGG	3 cut(s)	525, 659, 757
BtsIMutI	CAGTG	4 cut(s)	462, 501, 703, 790
CfoI	GCGC	2 cut(s)	281, 882
Cfr13I	GGNCC	1 cut(s)	229
CviAII	CATG	3 cut(s)	60, 660, 704
DdeI	CTNAG	2 cut(s)	405, 441
DpnI	GATC	3 cut(s)	468, 754, 848
DpnII	GATC	3 cut(s)	466, 752, 846
DraI	TTTAAA	1 cut(s)	552
EaeI	YGGCCR	1 cut(s)	780
EciI	GGCGGA	2 cut(s)	68, 76
Eco130I	CCWWGG	2 cut(s)	354, 659
Eco88I	CYCGRG	1 cut(s)	723
Eco91I	GGTNACC	1 cut(s)	650
EcoO65I	GGTNACC	1 cut(s)	650
EcoT14I	CCWWGG	2 cut(s)	354, 659
ErhI	CCWWGG	2 cut(s)	354, 659
FaeI	CATG	3 cut(s)	63, 663, 707
FaiI	YATR	8 cut(s)	8, 32, 61, 497, 546, 645, 661, 705
FaqI	GGGAC	2 cut(s)	261, 473
FatI	CATG	3 cut(s)	59, 659, 703
FauI	CCCGC	1 cut(s)	470
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	5 cut(s)	90, 176, 179, 289, 582
Fsp4HI	GCNGC	5 cut(s)	90, 176, 179, 289, 582
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	280, 881
GluI	GCNGC	5 cut(s)	90, 176, 179, 289, 582
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	4 cut(s)	230, 353, 524, 782
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	2 cut(s)	281, 882
Hin1II	CATG	3 cut(s)	63, 663, 707
Hin6I	GCGC	2 cut(s)	279, 880
HinP1I	GCGC	2 cut(s)	279, 880
HinfI	GANTC	4 cut(s)	56, 326, 472, 639
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	701, 815
Hpy188I	TCNGA	4 cut(s)	241, 396, 471, 851
Hpy188III	TCNNGA	3 cut(s)	37, 190, 565
Hpy8I	GTNNAC	2 cut(s)	701, 815
Hpy99I	CGWCG	4 cut(s)	218, 221, 338, 839
HpyAV	CCTTC	4 cut(s)	168, 232, 290, 552
HpyCH4III	ACNGT	3 cut(s)	505, 539, 571
HpyCH4IV	ACGT	2 cut(s)	333, 384
HpyCH4V	TGCA	3 cut(s)	20, 815, 863
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 227, 285, 521, 606, 812
HpyF3I	CTNAG	2 cut(s)	405, 441
HpySE526I	ACGT	2 cut(s)	333, 384
Hsp92II	CATG	3 cut(s)	63, 663, 707
HspAI	GCGC	2 cut(s)	279, 880
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	466, 752, 846
LmnI	GCTCC	2 cut(s)	144, 685
LpnPI	CCDG	8 cut(s)	229, 245, 357, 408, 442, 668, 732, 796
Lsp1109I	GCAGC	2 cut(s)	300, 568
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	2 cut(s)	333, 384
MaeIII	GTNAC	3 cut(s)	490, 650, 772
MalI	GATC	3 cut(s)	468, 754, 848
MboI	GATC	3 cut(s)	466, 752, 846
MboII	GAAGA	3 cut(s)	6, 160, 878
MhlI	GDGCHC	2 cut(s)	503, 817
MlsI	TGGCCA	1 cut(s)	782
MluCI	AATT	4 cut(s)	117, 370, 398, 426
MluNI	TGGCCA	1 cut(s)	782
MlyI	GAGTC	2 cut(s)	335, 481
Mox20I	TGGCCA	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	782
MseI	TTAA	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	782
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	1 cut(s)	344
MvnI	CGCG	2 cut(s)	281, 477
MwoI	GCNNNNNNNGC	6 cut(s)	17, 227, 285, 521, 606, 812
NcoI	CCATGG	1 cut(s)	659
NdeII	GATC	3 cut(s)	466, 752, 846
NlaIII	CATG	3 cut(s)	63, 663, 707
NmuCI	GTSAC	1 cut(s)	490
PaeR7I	CTCGAG	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 613
PfeI	GAWTC	2 cut(s)	56, 639
PkrI	GCNGC	5 cut(s)	91, 177, 180, 290, 583
PleI	GAGTC	2 cut(s)	334, 480
PpsI	GAGTC	2 cut(s)	334, 480
PspEI	GGTNACC	1 cut(s)	650
PspPI	GGNCC	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	723
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	5 cut(s)	90, 176, 179, 289, 582
Sau3AI	GATC	3 cut(s)	466, 752, 846
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	335, 481
SduI	GDGCHC	2 cut(s)	503, 817
SfaNI	GCATC	1 cut(s)	793
SfcI	CTRYAG	1 cut(s)	535
Sfr274I	CTCGAG	1 cut(s)	723
SlaI	CTCGAG	1 cut(s)	723
SmiI	ATTTAAAT	1 cut(s)	552
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	4 cut(s)	117, 370, 398, 426
SsiI	CCGC	7 cut(s)	53, 87, 90, 176, 179, 281, 477
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	354, 659
SwaI	ATTTAAAT	1 cut(s)	552
TaaI	ACNGT	3 cut(s)	505, 539, 571
TaiI	ACGT	2 cut(s)	336, 387
TaqI	TCGA	6 cut(s)	329, 336, 432, 724, 819, 834
TasI	AATT	4 cut(s)	117, 370, 398, 426
TauI	GCSGC	3 cut(s)	92, 178, 181
TfiI	GAWTC	2 cut(s)	56, 639
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	4 cut(s)	469, 508, 703, 790
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	2 cut(s)	288, 581
Tsp45I	GTSAC	1 cut(s)	490
TspDTI	ATGAA	3 cut(s)	48, 609, 812
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	4 cut(s)	469, 508, 703, 790
VneI	GTGCAC	1 cut(s)	813
XapI	RAATTY	1 cut(s)	370
XhoI	CTCGAG	1 cut(s)	723
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.