Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9727146 .. 9729777

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACTTCGGCTACCTCCCATCTATTCAAGACCTTATCAATAACAGCAGACTCATGCGGTCTCTCTCTCCCTCACCTCTTCACCGCCAAAACCCCCAACGCATTTCTCCCAATCCCAACCAGACCCACCACCAAGCTCCACCTCTCCCACTCCTTTTCACCTCTCAGGAGCAAGACCCAGTTCTCTTCCATAGTCTCATACGTGGCCCAGACCTCGGATTGGGCCCAGCAGGAGGAGGACAGCCCGGTTGCCATTGATGGAGCTGCGGAGGAGAGCGGCGAGGAGGGGCTGTTTGAGGAGAGGGAAGAAGAGGTGGCCCCTGTTGAGCCGCCCGAGGAGGCCAAGATTTTTGTTGGGAATTTGCCCTTTGATGTTGACAGTGAGAGATTGGCTCAGCTGTTTGAGAAGGCCGGAGTTGTCGAGATTGCTGAGGTTATTTACAACAGGGACACTGACCAGAGCCGTGGATTCGGGTTTGTGACTATGAGCACTGTGGAAGAAGCTGATAGGGCTGTGGAACAGTTCAGTCGCTACGATTTGAATGGAAGACTCTTGACTGTCAATAAGGCTGCTCCAAGAGGAACACGTGCAGAGCGCCCACCACGCTCTTATCAATCTTCATACAGAATCTATGTTGGTAACCTGCCATGGAATGTGGATAATGGTGAACTTGAGCAGCTTTTCAGTAAACACGGTAGCGTGGTAGACGCGCGTGTAGTCTTTGACAGAGAAACTGGACGATCACGTGGTTTTGGCTTTGTAACAATGGCCAGTGAATCTGATATGAATGATGCCATTGGTGCTCTGGATGGAGAGAGTTTGGACGGCAGGGCGATCAGAGTAAATGTTGCCGAGGAAAGACAAAGGCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

291

Amino Acids

32.29

Weight (kDa)

4.86

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	116 - 185	1.2e-18	RNA recognition motif
RRM_1	PF00076	210 - 280	1.8e-23	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccBSI	CCGCTC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	705
AccII	CGCG	2 cut(s)	710, 712
AciI	CCGC	5 cut(s)	57, 84, 266, 276, 329
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	358
AcvI	CACGTG	2 cut(s)	587, 746
AfiI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	2 cut(s)	28, 541
AluBI	AGCT	5 cut(s)	136, 263, 397, 503, 679
AluI	AGCT	5 cut(s)	136, 263, 397, 503, 679
Alw21I	GWGCWC	2 cut(s)	491, 805
Alw26I	GTCTC	2 cut(s)	65, 199
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	6 cut(s)	204, 222, 315, 339, 408, 768
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	263, 569, 676
ApoI	RAATTY	1 cut(s)	358
AspLEI	GCGC	3 cut(s)	597, 712, 870
AspS9I	GGNCC	4 cut(s)	205, 222, 223, 316
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	65, 73, 150, 677
AvaI	CYCGRG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	226
BbrPI	CACGTG	2 cut(s)	587, 746
BbsI	GAAGAC	1 cut(s)	553
Bbv12I	GWGCWC	2 cut(s)	491, 805
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	250, 556, 688
BccI	CCATC	3 cut(s)	27, 251, 803
BceAI	ACGGC	2 cut(s)	447, 841
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	65, 199
BfoI	RGCGCY	2 cut(s)	598, 871
BfuAI	ACCTGC	1 cut(s)	651
BisI	GCNGC	5 cut(s)	264, 277, 329, 570, 677
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	5 cut(s)	265, 278, 330, 571, 678
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	4 cut(s)	205, 222, 223, 316
BmiI	GGNNCC	2 cut(s)	224, 318
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	781
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	553
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	3 cut(s)	202, 587, 746
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	5 cut(s)	213, 333, 463, 647, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 219, 232
Bse1I	ACTGG	3 cut(s)	178, 739, 771
BseDI	CCNNGG	5 cut(s)	213, 333, 463, 647, 852
BseGI	GGATG	1 cut(s)	814
BseLI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
BseMII	CTCAG	3 cut(s)	178, 407, 420
BseNI	ACTGG	3 cut(s)	178, 739, 771
BseRI	GAGGAG	5 cut(s)	248, 284, 296, 311, 350
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	250, 556, 688
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	2 cut(s)	710, 712
BshFI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BsiHKAI	GWGCWC	2 cut(s)	491, 805
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	245, 411
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
BsmAI	GTCTC	2 cut(s)	65, 199
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	332
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	226, 491, 805
Bsp143I	GATC	2 cut(s)	740, 834
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	5 cut(s)	57, 84, 266, 276, 329
BspANI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BspCNI	CTCAG	3 cut(s)	177, 406, 421
BspFNI	CGCG	2 cut(s)	710, 712
BspLI	GGNNCC	2 cut(s)	224, 318
BspMI	ACCTGC	1 cut(s)	651
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	178, 739, 771
BssECI	CCNNGG	5 cut(s)	213, 333, 463, 647, 852
BssMI	GATC	2 cut(s)	740, 834
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	5 cut(s)	380, 493, 522, 559, 695
Bst6I	CTCTTC	3 cut(s)	83, 190, 303
BstBAI	YACGTR	3 cut(s)	202, 587, 746
BstDEI	CTNAG	3 cut(s)	164, 393, 429
BstDSI	CCRYGG	2 cut(s)	463, 647
BstEII	GGTNACC	1 cut(s)	638
BstF5I	GGATG	1 cut(s)	814
BstFNI	CGCG	2 cut(s)	710, 712
BstH2I	RGCGCY	2 cut(s)	598, 871
BstHHI	GCGC	3 cut(s)	597, 712, 870
BstKTI	GATC	2 cut(s)	743, 837
BstMAI	GTCTC	2 cut(s)	65, 199
BstMBI	GATC	2 cut(s)	740, 834
BstMWI	GCNNNNNNNGC	3 cut(s)	509, 603, 800
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	2 cut(s)	710, 712
BstV1I	GCAGC	3 cut(s)	250, 556, 688
BstV2I	GAAGAC	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuRI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BtgI	CCRYGG	2 cut(s)	463, 647
BtsCI	GGATG	1 cut(s)	814
BtsIMutI	CAGTG	4 cut(s)	385, 450, 489, 778
BveI	ACCTGC	1 cut(s)	651
CfoI	GCGC	3 cut(s)	597, 712, 870
Cfr13I	GGNCC	4 cut(s)	205, 222, 223, 316
CseI	GACGC	1 cut(s)	716
CviAII	CATG	2 cut(s)	54, 648
DdeI	CTNAG	3 cut(s)	164, 393, 429
DpnI	GATC	2 cut(s)	742, 836
DpnII	GATC	2 cut(s)	740, 834
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	3 cut(s)	83, 190, 303
EarI	CTCTTC	3 cut(s)	83, 190, 303
Eco130I	CCWWGG	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	65
Eco72I	CACGTG	2 cut(s)	587, 746
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	2 cut(s)	57, 651
FaiI	YATR	8 cut(s)	55, 191, 199, 485, 622, 633, 649, 785
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	53, 647
FblI	GTMKAC	1 cut(s)	705
Fnu4HI	GCNGC	5 cut(s)	264, 277, 329, 570, 677
FokI	GGATG	1 cut(s)	821
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	5 cut(s)	264, 277, 329, 570, 677
GlaI	GCGC	3 cut(s)	596, 711, 869
GluI	GCNGC	5 cut(s)	264, 277, 329, 570, 677
GsaI	CCCAGC	1 cut(s)	229
HaeII	RGCGCY	2 cut(s)	598, 871
HaeIII	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
HapII	CCGG	2 cut(s)	245, 411
HgaI	GACGC	1 cut(s)	716
HhaI	GCGC	3 cut(s)	597, 712, 870
Hin1II	CATG	2 cut(s)	57, 651
Hin6I	GCGC	3 cut(s)	595, 710, 868
HinP1I	GCGC	3 cut(s)	595, 710, 868
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	50, 468, 549, 627, 776
HpaII	CCGG	2 cut(s)	245, 411
HphI	GGTGA	4 cut(s)	65, 73, 150, 677
Hpy166II	GTNNAC	4 cut(s)	376, 668, 689, 706
Hpy188I	TCNGA	3 cut(s)	217, 781, 839
Hpy188III	TCNNGA	5 cut(s)	28, 166, 421, 553, 806
Hpy8I	GTNNAC	4 cut(s)	376, 668, 689, 706
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	5 cut(s)	380, 493, 522, 559, 695
HpyCH4IV	ACGT	3 cut(s)	201, 586, 745
HpyCH4V	TGCA	1 cut(s)	590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	509, 603, 800
HpyF3I	CTNAG	3 cut(s)	164, 393, 429
HpySE526I	ACGT	3 cut(s)	201, 586, 745
Hsp92II	CATG	2 cut(s)	57, 651
HspAI	GCGC	3 cut(s)	595, 710, 868
Kzo9I	GATC	2 cut(s)	740, 834
LmnI	GCTCC	4 cut(s)	141, 168, 260, 577
Lsp1109I	GCAGC	3 cut(s)	250, 556, 688
LweI	GCATC	1 cut(s)	781
MaeII	ACGT	3 cut(s)	201, 586, 745
MaeIII	GTNAC	3 cut(s)	478, 638, 760
MalI	GATC	2 cut(s)	742, 836
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	2 cut(s)	740, 834
MboII	GAAGA	7 cut(s)	70, 177, 317, 320, 509, 558, 609
MhlI	GDGCHC	3 cut(s)	226, 491, 805
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	2 cut(s)	44, 543
Mox20I	TGGCCA	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	770
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	245, 411
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	710, 712
MwoI	GCNNNNNNNGC	3 cut(s)	509, 603, 800
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	2 cut(s)	740, 834
NlaIII	CATG	2 cut(s)	57, 651
NlaIV	GGNNCC	2 cut(s)	224, 318
NmuCI	GTSAC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	468, 627, 776
PkrI	GCNGC	5 cut(s)	265, 278, 330, 571, 678
PleI	GAGTC	2 cut(s)	44, 543
PmaCI	CACGTG	2 cut(s)	587, 746
PmlI	CACGTG	2 cut(s)	587, 746
PpsI	GAGTC	2 cut(s)	44, 543
Ppu21I	YACGTR	3 cut(s)	202, 587, 746
PspCI	CACGTG	2 cut(s)	587, 746
PspEI	GGTNACC	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	224, 318
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	4 cut(s)	205, 222, 223, 316
PvuII	CAGCTG	1 cut(s)	397
SatI	GCNGC	5 cut(s)	264, 277, 329, 570, 677
Sau3AI	GATC	2 cut(s)	740, 834
Sau96I	GGNCC	4 cut(s)	205, 222, 223, 316
SchI	GAGTC	2 cut(s)	44, 543
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	3 cut(s)	226, 491, 805
SfaNI	GCATC	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	5 cut(s)	57, 84, 266, 276, 329
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	5 cut(s)	380, 493, 522, 559, 695
TaiI	ACGT	3 cut(s)	204, 589, 748
TaqI	TCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	358
TauI	GCSGC	2 cut(s)	279, 331
TfiI	GAWTC	3 cut(s)	468, 627, 776
TscAI	CASTG	4 cut(s)	385, 457, 496, 778
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	263, 569, 676
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	609, 800
TspRI	CASTG	4 cut(s)	385, 457, 496, 778
XapI	RAATTY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802
XmiI	GTMKAC	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.