Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Forward (+)

26314548 .. 26316770

Gene Structure 2223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G295800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTCTTCTGCAACCGCCGCTTTTTTGAAGCCAATATCAATAGCCGAAAGTTGCCTACCCTCTGTGCCAGCCCTCTTCGCCCCCAAAAACCAATACCCAATTCTTTCACTTCCTTCAAAACCCACCAAGCTCTCAGCCGTCTCATGCTCATTTACGCCTTCTCTCCCTTCATGGGTCTCTCTCAAGCACAAGTCTTTACCTCTGCATGTGGCTCAGACCTCGGACTGGGCTCAAGAAGAAGAAGTAAAAGAAGAGGGTTCGGGTTTTGAGAGTGAAGGGGTCGAGGAAACAGAGGACGGGGTAGAGGCAAGTGCTTTATCTGATGGGGAAGAGAGTTCTGGAGACGGAGTTTTAGCGGTTGGTGAAGAAGAATACTATCCCGAACCACCCGAAGAGGCCAAGCTCTATGTGGGTAATTTGCCTTACGATGTTGATAGTGAGAAACTTGCTCATATCTTCAACGAGGCTGGGGTTGTTGAGATTGCTGAGGTGATCTACAATAGGGAAACAGATCAGAGTAGAGGGTTTGGGTTTGTGACTATGAGTACTGTTGAAGAAGCTGAGAAGGCTGTACAGTTGTTCCACCGTTATGATATAGGTGGAAGACTTTTGACTGTAAACAAGGCTGCTCCTAGGGGGTCACGTCCTGAAAGACCTCCTCGAGTGAATGAACCTTCTTTCAGAATCTATGTTGGTAACCTGCCATGGCAAGTTGATGATTCTCGTTTGGAGCAGGTTTTCAGTGAACATGGAAAGGTGGTCAGTGCCAGGGTAGTATATGACCGGGAAACAGGGCGCTCACGCGGGTTTGGTTTTGTTACGTTTTCTAGTGAGACAGAAGTGGATGATGCCATTGCTGCTCTTGATGGACAGAGTTTGGATGGCAGATCAATCCGAGTAAATGTTGCTGAAGAGCGACCAAGGCGTGGCTCATTTTCCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

315

Amino Acids

34.39

Weight (kDa)

4.7

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	708, 724
AccB7I	CCANNNNNTGG	1 cut(s)	926
AccII	CGCG	1 cut(s)	804
AciI	CCGC	4 cut(s)	15, 18, 356, 804
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	2 cut(s)	547, 573
AfiI	CCNNNNNNNGG	3 cut(s)	172, 225, 926
AgsI	TTSAA	4 cut(s)	28, 117, 460, 554
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	767
AjuI	GAANNNNNNNTTGG	2 cut(s)	84, 116
AluBI	AGCT	3 cut(s)	130, 403, 560
AluI	AGCT	3 cut(s)	130, 403, 560
Alw26I	GTCTC	4 cut(s)	145, 181, 336, 827
Ama87I	CYCGRG	1 cut(s)	660
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	626, 857
AspA2I	CCTAGG	1 cut(s)	632
AspLEI	GCGC	1 cut(s)	798
AsuC2I	CCSGG	1 cut(s)	785
AsuHPI	GGTGA	2 cut(s)	374, 502
AvaI	CYCGRG	1 cut(s)	660
AvrII	CCTAGG	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	610
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	613, 844
BccI	CCATC	3 cut(s)	317, 860, 875
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	769
BcnI	CCSGG	1 cut(s)	785
BcoDI	GTCTC	4 cut(s)	145, 181, 336, 827
BfaI	CTAG	2 cut(s)	633, 828
BfoI	RGCGCY	1 cut(s)	799
BfuAI	ACCTGC	2 cut(s)	708, 724
BisI	GCNGC	3 cut(s)	18, 627, 858
BlnI	CCTAGG	1 cut(s)	632
BlsI	GCNGC	3 cut(s)	19, 628, 859
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	769, 785
BmeT110I	CYCGRG	1 cut(s)	660
BmgBI	CACGTC	1 cut(s)	644
BmrFI	CCNGG	2 cut(s)	769, 785
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	838
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	610
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	2 cut(s)	167, 216
BpuMI	CCSGG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	5 cut(s)	219, 632, 704, 768, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 225, 926
Bse1I	ACTGG	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	1 cut(s)	769
BseDI	CCNNGG	5 cut(s)	219, 632, 704, 768, 920
BseGI	GGATG	2 cut(s)	850, 886
BseLI	CCNNNNNNNGG	3 cut(s)	172, 225, 926
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	4 cut(s)	147, 227, 477, 552
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	613, 844
BseYI	CCCAGC	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	804
BshFI	GGCC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	660
BsiSI	CCGG	1 cut(s)	784
BslI	CCNNNNNNNGG	3 cut(s)	172, 225, 926
BsmAI	GTCTC	4 cut(s)	145, 181, 336, 827
BsmBI	CGTCTC	2 cut(s)	145, 336
BsnI	GGCC	1 cut(s)	398
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	571
Bsp143I	GATC	3 cut(s)	492, 511, 887
Bsp19I	CCATGG	1 cut(s)	704
BspACI	CCGC	4 cut(s)	15, 18, 356, 804
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	4 cut(s)	146, 226, 478, 553
BspFNI	CGCG	1 cut(s)	804
BspMI	ACCTGC	2 cut(s)	708, 724
BspQI	GCTCTTC	1 cut(s)	906
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	5 cut(s)	219, 632, 704, 768, 920
BssMI	GATC	3 cut(s)	492, 511, 887
BssT1I	CCWWGG	3 cut(s)	632, 704, 920
Bst2UI	CCWGG	1 cut(s)	769
Bst4CI	ACNGT	4 cut(s)	550, 576, 587, 616
Bst6I	CTCTTC	5 cut(s)	80, 246, 324, 387, 906
BstAUI	TGTACA	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	4 cut(s)	133, 213, 486, 561
BstDSI	CCRYGG	1 cut(s)	704
BstEII	GGTNACC	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	850, 886
BstFNI	CGCG	1 cut(s)	804
BstH2I	RGCGCY	1 cut(s)	799
BstHHI	GCGC	1 cut(s)	798
BstKTI	GATC	3 cut(s)	495, 514, 890
BstMAI	GTCTC	4 cut(s)	145, 181, 336, 827
BstMBI	GATC	3 cut(s)	492, 511, 887
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 77, 566, 857, 922
BstNI	CCWGG	1 cut(s)	769
BstNSI	RCATGY	1 cut(s)	209
BstPI	GGTNACC	1 cut(s)	695
BstSCI	CCNGG	2 cut(s)	767, 783
BstUI	CGCG	1 cut(s)	804
BstV1I	GCAGC	2 cut(s)	613, 844
BstV2I	GAAGAC	1 cut(s)	610
BsuRI	GGCC	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	704
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	850, 886
BtsIMutI	CAGTG	2 cut(s)	748, 769
BveI	ACCTGC	2 cut(s)	708, 724
Cac8I	GCNNGC	1 cut(s)	69
CfoI	GCGC	1 cut(s)	798
Csp6I	GTAC	2 cut(s)	546, 572
CviAII	CATG	5 cut(s)	144, 171, 206, 705, 749
CviQI	GTAC	2 cut(s)	546, 572
DdeI	CTNAG	4 cut(s)	133, 213, 486, 561
DpnI	GATC	3 cut(s)	494, 513, 889
DpnII	GATC	3 cut(s)	492, 511, 887
Eam1104I	CTCTTC	5 cut(s)	80, 246, 324, 387, 906
EarI	CTCTTC	5 cut(s)	80, 246, 324, 387, 906
Eco130I	CCWWGG	3 cut(s)	632, 704, 920
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	660
Eco91I	GGTNACC	1 cut(s)	695
EcoO65I	GGTNACC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	767
EcoT14I	CCWWGG	3 cut(s)	632, 704, 920
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	3 cut(s)	632, 704, 920
Esp3I	CGTCTC	2 cut(s)	145, 336
FaeI	CATG	5 cut(s)	147, 174, 209, 708, 752
FatI	CATG	5 cut(s)	143, 170, 205, 704, 748
FauI	CCCGC	1 cut(s)	797
Fnu4HI	GCNGC	3 cut(s)	18, 627, 858
FokI	GGATG	2 cut(s)	857, 893
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	18, 627, 858
FspBI	CTAG	2 cut(s)	633, 828
GlaI	GCGC	1 cut(s)	797
GluI	GCNGC	3 cut(s)	18, 627, 858
GsaI	CCCAGC	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	799
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	1 cut(s)	784
HhaI	GCGC	1 cut(s)	798
Hin1II	CATG	5 cut(s)	147, 174, 209, 708, 752
Hin6I	GCGC	1 cut(s)	796
HinP1I	GCGC	1 cut(s)	796
HinfI	GANTC	2 cut(s)	684, 719
HpaII	CCGG	1 cut(s)	784
HphI	GGTGA	2 cut(s)	374, 502
Hpy166II	GTNNAC	2 cut(s)	619, 746
Hpy188I	TCNGA	6 cut(s)	216, 223, 322, 516, 683, 896
Hpy188III	TCNNGA	5 cut(s)	233, 339, 380, 647, 863
Hpy8I	GTNNAC	2 cut(s)	619, 746
HpyAV	CCTTC	6 cut(s)	123, 168, 177, 269, 559, 684
HpyCH4III	ACNGT	4 cut(s)	550, 576, 587, 616
HpyCH4IV	ACGT	2 cut(s)	643, 821
HpyCH4V	TGCA	2 cut(s)	11, 205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 77, 566, 857, 922
HpyF3I	CTNAG	4 cut(s)	133, 213, 486, 561
HpySE526I	ACGT	2 cut(s)	643, 821
Hsp92II	CATG	5 cut(s)	147, 174, 209, 708, 752
HspAI	GCGC	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	492, 511, 887
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	634, 730
Lsp1109I	GCAGC	2 cut(s)	613, 844
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	2 cut(s)	633, 828
MaeII	ACGT	2 cut(s)	643, 821
MaeIII	GTNAC	4 cut(s)	535, 639, 695, 817
MalI	GATC	3 cut(s)	494, 513, 889
MboI	GATC	3 cut(s)	492, 511, 887
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	2 cut(s)	99, 415
MseI	TTAA	1 cut(s)	943
MslI	CAYNNNNRTG	1 cut(s)	588
MspI	CCGG	1 cut(s)	784
MspR9I	CCNGG	2 cut(s)	769, 785
MvaI	CCWGG	1 cut(s)	769
MvnI	CGCG	1 cut(s)	804
MwoI	GCNNNNNNNGC	5 cut(s)	17, 77, 566, 857, 922
NciI	CCSGG	1 cut(s)	785
NcoI	CCATGG	1 cut(s)	704
NdeII	GATC	3 cut(s)	492, 511, 887
NlaIII	CATG	5 cut(s)	147, 174, 209, 708, 752
NmuCI	GTSAC	2 cut(s)	535, 639
NspI	RCATGY	1 cut(s)	209
PaeR7I	CTCGAG	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	906
PfeI	GAWTC	2 cut(s)	684, 719
PflMI	CCANNNNNTGG	1 cut(s)	926
PkrI	GCNGC	3 cut(s)	19, 628, 859
Psp6I	CCWGG	1 cut(s)	767
PspEI	GGTNACC	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	767
PspXI	VCTCGAGB	1 cut(s)	660
RsaI	GTAC	2 cut(s)	547, 573
RsaNI	GTAC	2 cut(s)	546, 572
RseI	CAYNNNNRTG	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	1 cut(s)	943
SatI	GCNGC	3 cut(s)	18, 627, 858
Sau3AI	GATC	3 cut(s)	492, 511, 887
ScaI	AGTACT	1 cut(s)	547
ScrFI	CCNGG	2 cut(s)	769, 785
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	838
Sfr274I	CTCGAG	1 cut(s)	660
SlaI	CTCGAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	3 cut(s)	182, 231, 660
SmoI	CTYRAG	3 cut(s)	182, 231, 660
Sse9I	AATT	2 cut(s)	99, 415
SsiI	CCGC	4 cut(s)	15, 18, 356, 804
SspMI	CTAG	2 cut(s)	633, 828
StyD4I	CCNGG	2 cut(s)	767, 783
StyI	CCWWGG	3 cut(s)	632, 704, 920
TaaI	ACNGT	4 cut(s)	550, 576, 587, 616
TaiI	ACGT	2 cut(s)	646, 824
TaqI	TCGA	2 cut(s)	282, 661
TasI	AATT	2 cut(s)	99, 415
TatI	WGTACW	2 cut(s)	545, 571
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	684, 719
Tru1I	TTAA	1 cut(s)	943
Tru9I	TTAA	1 cut(s)	943
TscAI	CASTG	2 cut(s)	748, 769
TseFI	GTSAC	2 cut(s)	535, 639
TseI	GCWGC	2 cut(s)	626, 857
Tsp45I	GTSAC	2 cut(s)	535, 639
TspDTI	ATGAA	2 cut(s)	159, 684
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	748, 769
Van91I	CCANNNNNTGG	1 cut(s)	926
XceI	RCATGY	1 cut(s)	209
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	660
XmaJI	CCTAGG	1 cut(s)	632
XspI	CTAG	2 cut(s)	633, 828
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.