Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

19208923 .. 19211148

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14480.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTATGGCTTCTTCTGCAACTTCCAATCTATTCAAGACCTTATCAATGGCGGATTCATGCCTAGTTTCCCTCCCTTACCTCTCCGCCGCCAAAACCACCAACCCATTTCTCTCAATTCCCTCCAAACCCATCAAGCTCCACCTCTCCTACACTTCTTCCTCGTTCTTCTCGCCGCCGCTGTCCCTCGGGAACAAACCCCACTTCACCTCCGTCGTCGCCTTAGTGGCCCAGACCTCGGACTGGGGACAAGAGGACAACACGCTCACCATTGACGGCGCGGAGGGCAGCGAGAGCGAGGAAGAAGGGGTCTTTGAGGAGAGAGAGGAGGAGTCGAATGTCGAGCCACCGGAGGAGGCCAAGGTGTTTGTTGGGAATTTACCTTTTGACGTTGATAGTCAGAAATTGGCTGAGCTTTTTGAGAGGGCTGGAATTGTCGAGGTTGCTGAGGTTATTTACAACAGGGACACTGATCAGAGTCGCGGGTTTGGATTTGTGACTATGAGCACCGTTGAGGAAGCTGATAAGGCTGTGGAACTCTACAGTCGTTATGATTTAAATGGAAGGCTCTTGACTGTCAATAGGGCTGCCCCAAGAGGAACACGCCAAGAACGCCCACCCCGTTCATTTGGATCTGCTTTTAGAATCTATGTTGGTAACCTCCCATGGAATGTGGATACTCCTCAACTGGAGCAAATTTTCAGTGAACATGGTAGCGTTGTGGAGGCTCGAGTAGTCTTTGACAGAGAAACTGGACGATCCCGTGGTTTTGGCTTTGTAACAATGGCCAGTGAAAGCGAAATGAATGATGCCATTGGTGCACTCGATGGACAGAGTATCGACGGGAGGGCGATCAGAGTAAATGTTGCAGAAGAAAGACAAAGGCGCAGTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

300

Amino Acids

32.97

Weight (kDa)

4.72

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	281, 483
AciI	CCGC	7 cut(s)	53, 87, 90, 176, 179, 281, 483
AclWI	GGATC	2 cut(s)	640, 753
AcoI	YGGCCR	1 cut(s)	786
AcsI	RAATTY	2 cut(s)	376, 696
AfiI	CCNNNNNNNGG	2 cut(s)	238, 243
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	3 cut(s)	139, 415, 521
AluI	AGCT	3 cut(s)	139, 415, 521
Alw21I	GWGCWC	2 cut(s)	509, 823
Alw44I	GTGCAC	1 cut(s)	819
AlwI	GGATC	2 cut(s)	640, 753
Ama87I	CYCGRG	2 cut(s)	188, 729
AoxI	GGCC	3 cut(s)	228, 357, 786
ApaLI	GTGCAC	1 cut(s)	819
ApeKI	GCWGC	2 cut(s)	288, 587
ApoI	RAATTY	2 cut(s)	376, 696
ArsI	GACNNNNNNTTYG	1 cut(s)	874
AspLEI	GCGC	2 cut(s)	281, 888
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	199, 259
AvaI	CYCGRG	2 cut(s)	188, 729
BaeGI	GKGCMC	1 cut(s)	823
BalI	TGGCCA	1 cut(s)	788
Bbv12I	GWGCWC	2 cut(s)	509, 823
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	300, 574
BccI	CCATC	2 cut(s)	140, 821
BceAI	ACGGC	1 cut(s)	292
BciVI	GTATCC	1 cut(s)	670
BclI	TGATCA	1 cut(s)	472
BfaI	CTAG	1 cut(s)	65
BfmI	CTRYAG	1 cut(s)	541
BfuI	GTATCC	1 cut(s)	670
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	5 cut(s)	90, 176, 179, 289, 588
BlpI	GCTNAGC	1 cut(s)	411
BlsI	GCNGC	5 cut(s)	91, 177, 180, 290, 589
BmeT110I	CYCGRG	2 cut(s)	188, 729
BmgT120I	GGNCC	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	253
BmsI	GCATC	1 cut(s)	799
BmuI	ACTGGG	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	710
Bpu10I	CCTNAGC	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	411
BsaJI	CCNNGG	5 cut(s)	187, 237, 360, 665, 763
BsaWI	WCCGGW	1 cut(s)	349
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 243
Bse1I	ACTGG	4 cut(s)	248, 693, 757, 789
BseDI	CCNNGG	5 cut(s)	187, 237, 360, 665, 763
BseLI	CCNNNNNNNGG	2 cut(s)	238, 243
BseMII	CTCAG	2 cut(s)	402, 438
BseNI	ACTGG	4 cut(s)	248, 693, 757, 789
BseRI	GAGGAG	5 cut(s)	332, 341, 344, 368, 672
BseSI	GKGCMC	1 cut(s)	823
BseXI	GCAGC	2 cut(s)	300, 574
Bsh1236I	CGCG	2 cut(s)	281, 483
BshFI	GGCC	3 cut(s)	230, 359, 788
BsiHKAI	GWGCWC	2 cut(s)	509, 823
BsiHKCI	CYCGRG	2 cut(s)	188, 729
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	3 cut(s)	169, 261, 479
BslI	CCNNNNNNNGG	2 cut(s)	238, 243
BsmFI	GGGAC	3 cut(s)	169, 261, 479
BsnI	GGCC	3 cut(s)	230, 359, 788
BsoBI	CYCGRG	2 cut(s)	188, 729
Bsp1286I	GDGCHC	2 cut(s)	509, 823
Bsp143I	GATC	4 cut(s)	472, 632, 758, 852
Bsp1720I	GCTNAGC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	665
BspACI	CCGC	7 cut(s)	53, 87, 90, 176, 179, 281, 483
BspANI	GGCC	3 cut(s)	230, 359, 788
BspCNI	CTCAG	2 cut(s)	403, 439
BspFNI	CGCG	2 cut(s)	281, 483
BspPI	GGATC	2 cut(s)	640, 753
BsrI	ACTGG	4 cut(s)	248, 693, 757, 789
BssECI	CCNNGG	5 cut(s)	187, 237, 360, 665, 763
BssMI	GATC	4 cut(s)	472, 632, 758, 852
BssT1I	CCWWGG	2 cut(s)	360, 665
Bst4CI	ACNGT	3 cut(s)	511, 545, 577
BstDEI	CTNAG	3 cut(s)	223, 411, 447
BstDSI	CCRYGG	2 cut(s)	665, 763
BstEII	GGTNACC	1 cut(s)	656
BstFNI	CGCG	2 cut(s)	281, 483
BstHHI	GCGC	2 cut(s)	281, 888
BstKTI	GATC	4 cut(s)	475, 635, 761, 855
BstMBI	GATC	4 cut(s)	472, 632, 758, 852
BstMWI	GCNNNNNNNGC	7 cut(s)	17, 227, 285, 294, 527, 612, 818
BstPI	GGTNACC	1 cut(s)	656
BstSFI	CTRYAG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	823
BstUI	CGCG	2 cut(s)	281, 483
BstV1I	GCAGC	2 cut(s)	300, 574
BstX2I	RGATCY	1 cut(s)	632
BstYI	RGATCY	1 cut(s)	632
BsuI	GTATCC	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	230, 359, 788
BtgI	CCRYGG	2 cut(s)	665, 763
BtsIMutI	CAGTG	3 cut(s)	468, 709, 796
CfoI	GCGC	2 cut(s)	281, 888
Cfr13I	GGNCC	1 cut(s)	229
CviAII	CATG	3 cut(s)	60, 666, 710
DdeI	CTNAG	3 cut(s)	223, 411, 447
DpnI	GATC	4 cut(s)	474, 634, 760, 854
DpnII	GATC	4 cut(s)	472, 632, 758, 852
DraI	TTTAAA	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	786
EciI	GGCGGA	2 cut(s)	68, 76
Eco130I	CCWWGG	2 cut(s)	360, 665
Eco88I	CYCGRG	2 cut(s)	188, 729
Eco91I	GGTNACC	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	656
EcoT14I	CCWWGG	2 cut(s)	360, 665
ErhI	CCWWGG	2 cut(s)	360, 665
FaeI	CATG	3 cut(s)	63, 669, 713
FaiI	YATR	7 cut(s)	8, 61, 503, 552, 651, 667, 711
FaqI	GGGAC	3 cut(s)	169, 261, 479
FatI	CATG	3 cut(s)	59, 665, 709
FauI	CCCGC	1 cut(s)	476
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	5 cut(s)	90, 176, 179, 289, 588
Fsp4HI	GCNGC	5 cut(s)	90, 176, 179, 289, 588
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	2 cut(s)	280, 887
GluI	GCNGC	5 cut(s)	90, 176, 179, 289, 588
GsuI	CTGGAG	1 cut(s)	710
HaeIII	GGCC	3 cut(s)	230, 359, 788
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	2 cut(s)	281, 888
Hin1II	CATG	3 cut(s)	63, 669, 713
Hin6I	GCGC	2 cut(s)	279, 886
HinP1I	GCGC	2 cut(s)	279, 886
HinfI	GANTC	4 cut(s)	56, 332, 478, 645
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	2 cut(s)	199, 259
Hpy166II	GTNNAC	2 cut(s)	707, 821
Hpy188I	TCNGA	4 cut(s)	241, 402, 477, 857
Hpy188III	TCNNGA	3 cut(s)	37, 190, 571
Hpy8I	GTNNAC	2 cut(s)	707, 821
Hpy99I	CGWCG	3 cut(s)	218, 221, 845
HpyAV	CCTTC	2 cut(s)	299, 558
HpyCH4III	ACNGT	3 cut(s)	511, 545, 577
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	3 cut(s)	20, 821, 869
HpyF10VI	GCNNNNNNNGC	7 cut(s)	17, 227, 285, 294, 527, 612, 818
HpyF3I	CTNAG	3 cut(s)	223, 411, 447
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	3 cut(s)	63, 669, 713
HspAI	GCGC	2 cut(s)	279, 886
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	4 cut(s)	472, 632, 758, 852
LmnI	GCTCC	2 cut(s)	144, 691
LpnPI	CCDG	8 cut(s)	229, 245, 363, 414, 448, 674, 738, 802
Lsp1109I	GCAGC	2 cut(s)	300, 574
LweI	GCATC	1 cut(s)	799
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	3 cut(s)	496, 656, 778
MalI	GATC	4 cut(s)	474, 634, 760, 854
MboI	GATC	4 cut(s)	472, 632, 758, 852
MboII	GAAGA	5 cut(s)	6, 150, 160, 314, 884
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	2 cut(s)	509, 823
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	5 cut(s)	117, 376, 404, 432, 696
MluNI	TGGCCA	1 cut(s)	788
MlyI	GAGTC	2 cut(s)	341, 487
Mox20I	TGGCCA	1 cut(s)	788
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	1 cut(s)	557
Msp20I	TGGCCA	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	281, 483
MwoI	GCNNNNNNNGC	7 cut(s)	17, 227, 285, 294, 527, 612, 818
NcoI	CCATGG	1 cut(s)	665
NdeII	GATC	4 cut(s)	472, 632, 758, 852
NlaIII	CATG	3 cut(s)	63, 669, 713
NmuCI	GTSAC	1 cut(s)	496
PaeR7I	CTCGAG	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	619
PfeI	GAWTC	2 cut(s)	56, 645
PkrI	GCNGC	5 cut(s)	91, 177, 180, 290, 589
PleI	GAGTC	2 cut(s)	340, 486
PpsI	GAGTC	2 cut(s)	340, 486
PspEI	GGTNACC	1 cut(s)	656
PspPI	GGNCC	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	729
PsuI	RGATCY	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	5 cut(s)	90, 176, 179, 289, 588
Sau3AI	GATC	4 cut(s)	472, 632, 758, 852
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	341, 487
SduI	GDGCHC	2 cut(s)	509, 823
SfaNI	GCATC	1 cut(s)	799
SfcI	CTRYAG	1 cut(s)	541
Sfr274I	CTCGAG	1 cut(s)	729
SlaI	CTCGAG	1 cut(s)	729
SmiI	ATTTAAAT	1 cut(s)	558
SmlI	CTYRAG	1 cut(s)	729
SmoI	CTYRAG	1 cut(s)	729
Sse9I	AATT	5 cut(s)	117, 376, 404, 432, 696
SsiI	CCGC	7 cut(s)	53, 87, 90, 176, 179, 281, 483
SspMI	CTAG	1 cut(s)	65
StyI	CCWWGG	2 cut(s)	360, 665
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	3 cut(s)	511, 545, 577
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	6 cut(s)	335, 342, 438, 730, 825, 840
TasI	AATT	5 cut(s)	117, 376, 404, 432, 696
TauI	GCSGC	3 cut(s)	92, 178, 181
TfiI	GAWTC	2 cut(s)	56, 645
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	3 cut(s)	475, 709, 796
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	288, 587
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	3 cut(s)	48, 615, 818
TspGWI	ACGGA	1 cut(s)	202
TspRI	CASTG	3 cut(s)	475, 709, 796
VneI	GTGCAC	1 cut(s)	819
XapI	RAATTY	2 cut(s)	376, 696
XhoI	CTCGAG	1 cut(s)	729
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.