Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Forward (+)

38458727 .. 38461111

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTCTTCTGCAACCACTGGGTTTCTGAAGCCACTAACAATAGCTGAGACTTGTCTAGCCTCTGTTTCAACCCCCAAAACCCAATACCCTTTTCTTTCATTTCCCTCCAAACCCACCAAGCTCTCAACTCTCTCATGCTCATTTTCTTCATGGGTCTCTCTCAAGCACAAGTCTTTGCCTCTCCATGTGGCTCAGACCTCAGAATGGGCCCAGCAAGAGGTTGCAGAAGAAGTTAAAGATGAGGTCTTGGAAACAGAGGAGGTGCCATTAGAGCCAAGTGCAGTGTCTGAAGGAGAAGCAGAAGCAGAAGTAGAAGAGTTCTATCAAGAGCCGCCGGAAGAGGCCAAGCTCTATGTGGGTAATTTGCCTTTTGATGTTGACAGTGAGAGGCTTGCTAATGTTTTCAATGAGGCTGGAATTGTTGAGATTGCTGAGGTGATTTACAATAGGGAAACCGATCAGAGCAGAGGATTTGGGTTTGTGACTATGAGTACTGTTGAAGAAGCTGAGAAGGCTGTGGAGATGTTCAACCGATATGATTTAGGTGGAAGGCCTTTGACTGTAAACAAGGCTGCTCCTAGAGGGTCACGCCCTGAAAGACCACCTAGGGTGAATGAACCCTCTTACAGAATTTATATTGGTAACCTGCCATGGCAAGTGGACGATTCTCGTTTGGAGCAGGTGTTCAGTGAACATGGCAATGTGGTGAGCGCGAGGGTAGTTTATGACAGGGAAACTGGCCGTTCACGCGGATTTGGTTTTGTCCAATTCTCCACTGAGGCTGAAGTGGAGGATGCCATCGCAGCTCTTGACGGACAGAGTTTGGATGGTAGGACAATCCGAGTAAATGTTGCTGAAGAGCGACCAAGGCGTGGCTTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

295

Amino Acids

32.78

Weight (kDa)

4.68

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	117 - 186	8.5e-19	RNA recognition motif
RRM_1	PF00076	211 - 281	2.5e-23	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	2 cut(s)	654, 670
AccB1I	GGYRCC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	872
AccII	CGCG	2 cut(s)	713, 750
AciI	CCGC	2 cut(s)	332, 750
AcoI	YGGCCR	1 cut(s)	739
AcsI	RAATTY	1 cut(s)	630
AcuI	CTGAAG	4 cut(s)	47, 309, 804, 876
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	204, 217, 872
AgsI	TTSAA	4 cut(s)	69, 406, 500, 529
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AloI	GAACNNNNNNTCC	2 cut(s)	668, 700
AluBI	AGCT	5 cut(s)	44, 121, 349, 506, 806
AluI	AGCT	5 cut(s)	44, 121, 349, 506, 806
Alw26I	GTCTC	2 cut(s)	41, 160
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	4 cut(s)	207, 342, 551, 739
ApaI	GGGCCC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	572, 803
ApoI	RAATTY	1 cut(s)	630
AspA2I	CCTAGG	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	2 cut(s)	207, 208
AsuHPI	GGTGA	3 cut(s)	448, 622, 718
AvrII	CCTAGG	1 cut(s)	605
BaeGI	GKGCMC	1 cut(s)	211
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	211
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	2 cut(s)	559, 815
BccI	CCATC	2 cut(s)	806, 821
BceAI	ACGGC	1 cut(s)	726
BcoDI	GTCTC	2 cut(s)	41, 160
BfaI	CTAG	3 cut(s)	56, 579, 606
BfuAI	ACCTGC	2 cut(s)	654, 670
BisI	GCNGC	3 cut(s)	332, 573, 804
BlnI	CCTAGG	1 cut(s)	605
BlsI	GCNGC	3 cut(s)	333, 574, 805
BmcAI	AGTACT	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	207, 208
BmiI	GGNNCC	2 cut(s)	209, 264
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	27
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	3 cut(s)	605, 650, 866
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 217, 872
Bse1I	ACTGG	2 cut(s)	22, 742
Bse3DI	GCAATG	1 cut(s)	706
BseDI	CCNNGG	3 cut(s)	605, 650, 866
BseGI	GGATG	2 cut(s)	799, 832
BseLI	CCNNNNNNNGG	3 cut(s)	204, 217, 872
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	6 cut(s)	36, 206, 213, 423, 498, 768
BseNI	ACTGG	2 cut(s)	22, 742
BseRI	GAGGAG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	559, 815
BseYI	CCCAGC	1 cut(s)	210
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	2 cut(s)	713, 750
BshFI	GGCC	4 cut(s)	209, 344, 553, 741
BshNI	GGYRCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	3 cut(s)	204, 217, 872
BsmAI	GTCTC	2 cut(s)	41, 160
BsnI	GGCC	4 cut(s)	209, 344, 553, 741
Bso31I	GGTCTC	1 cut(s)	160
Bsp120I	GGGCCC	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	2 cut(s)	332, 750
BspANI	GGCC	4 cut(s)	209, 344, 553, 741
BspCNI	CTCAG	6 cut(s)	37, 205, 212, 424, 499, 769
BspFNI	CGCG	2 cut(s)	713, 750
BspLI	GGNNCC	2 cut(s)	209, 264
BspMI	ACCTGC	2 cut(s)	654, 670
BspQI	GCTCTTC	1 cut(s)	852
BspT107I	GGYRCC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	706
BsrI	ACTGG	2 cut(s)	22, 742
BssECI	CCNNGG	3 cut(s)	605, 650, 866
BssMI	GATC	1 cut(s)	457
BssT1I	CCWWGG	3 cut(s)	605, 650, 866
Bst4CI	ACNGT	3 cut(s)	383, 496, 562
Bst6I	CTCTTC	3 cut(s)	309, 333, 852
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	6 cut(s)	45, 192, 199, 432, 507, 777
BstDSI	CCRYGG	1 cut(s)	650
BstEII	GGTNACC	1 cut(s)	641
BstF5I	GGATG	2 cut(s)	799, 832
BstFNI	CGCG	2 cut(s)	713, 750
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	41, 160
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	5 cut(s)	271, 512, 747, 803, 868
BstPI	GGTNACC	1 cut(s)	641
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	2 cut(s)	713, 750
BstV1I	GCAGC	2 cut(s)	559, 815
BsuRI	GGCC	4 cut(s)	209, 344, 553, 741
BtgI	CCRYGG	1 cut(s)	650
BtgZI	GCGATG	1 cut(s)	784
BtsCI	GGATG	2 cut(s)	799, 832
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	5 cut(s)	15, 288, 388, 694, 774
BveI	ACCTGC	2 cut(s)	654, 670
Cac8I	GCNNGC	1 cut(s)	393
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	2 cut(s)	207, 208
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	5 cut(s)	135, 150, 185, 651, 695
CviQI	GTAC	1 cut(s)	492
DdeI	CTNAG	6 cut(s)	45, 192, 199, 432, 507, 777
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	739
Eam1104I	CTCTTC	3 cut(s)	309, 333, 852
EarI	CTCTTC	3 cut(s)	309, 333, 852
Eco130I	CCWWGG	3 cut(s)	605, 650, 866
Eco147I	AGGCCT	1 cut(s)	553
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	160
Eco57I	CTGAAG	4 cut(s)	47, 309, 804, 876
Eco91I	GGTNACC	1 cut(s)	641
EcoO65I	GGTNACC	1 cut(s)	641
EcoT14I	CCWWGG	3 cut(s)	605, 650, 866
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	3 cut(s)	605, 650, 866
FaeI	CATG	5 cut(s)	138, 153, 188, 654, 698
FatI	CATG	5 cut(s)	134, 149, 184, 650, 694
Fnu4HI	GCNGC	3 cut(s)	332, 573, 804
FokI	GGATG	2 cut(s)	806, 839
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	332, 573, 804
FspBI	CTAG	3 cut(s)	56, 579, 606
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	3 cut(s)	332, 573, 804
GsaI	CCCAGC	1 cut(s)	214
HaeIII	GGCC	4 cut(s)	209, 344, 553, 741
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	713
Hin1II	CATG	5 cut(s)	138, 153, 188, 654, 698
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	665
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	3 cut(s)	448, 622, 718
Hpy166II	GTNNAC	5 cut(s)	379, 565, 661, 692, 746
Hpy188I	TCNGA	6 cut(s)	27, 195, 202, 289, 462, 842
Hpy188III	TCNNGA	2 cut(s)	326, 809
Hpy8I	GTNNAC	5 cut(s)	379, 565, 661, 692, 746
HpyAV	CCTTC	3 cut(s)	284, 505, 543
HpyCH4III	ACNGT	3 cut(s)	383, 496, 562
HpyCH4V	TGCA	3 cut(s)	11, 224, 281
HpyF10VI	GCNNNNNNNGC	5 cut(s)	271, 512, 747, 803, 868
HpyF3I	CTNAG	6 cut(s)	45, 192, 199, 432, 507, 777
Hsp92II	CATG	5 cut(s)	138, 153, 188, 654, 698
HspAI	GCGC	1 cut(s)	711
Kzo9I	GATC	1 cut(s)	457
LguI	GCTCTTC	1 cut(s)	852
LmnI	GCTCC	2 cut(s)	580, 676
LpnPI	CCDG	9 cut(s)	3, 224, 348, 399, 606, 659, 665, 715, 723
Lsp1109I	GCAGC	2 cut(s)	559, 815
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	3 cut(s)	56, 579, 606
MaeIII	GTNAC	3 cut(s)	481, 585, 641
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	6 cut(s)	138, 239, 326, 350, 512, 869
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	4 cut(s)	361, 417, 630, 767
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	699
MspI	CCGG	1 cut(s)	335
MvnI	CGCG	2 cut(s)	713, 750
MwoI	GCNNNNNNNGC	5 cut(s)	271, 512, 747, 803, 868
NcoI	CCATGG	1 cut(s)	650
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	5 cut(s)	138, 153, 188, 654, 698
NlaIV	GGNNCC	2 cut(s)	209, 264
NmuCI	GTSAC	2 cut(s)	481, 585
PaqCI	CACCTGC	1 cut(s)	670
PceI	AGGCCT	1 cut(s)	553
PciSI	GCTCTTC	1 cut(s)	852
PfeI	GAWTC	1 cut(s)	665
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	3 cut(s)	333, 574, 805
PspEI	GGTNACC	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	209, 264
PspOMI	GGGCCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	207, 208
PstNI	CAGNNNCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
RseI	CAYNNNNRTG	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	852
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	3 cut(s)	332, 573, 804
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	2 cut(s)	207, 208
ScaI	AGTACT	1 cut(s)	493
SduI	GDGCHC	1 cut(s)	211
SfaNI	GCATC	1 cut(s)	784
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	361, 417, 630, 767
SseBI	AGGCCT	1 cut(s)	553
SsiI	CCGC	2 cut(s)	332, 750
SspMI	CTAG	3 cut(s)	56, 579, 606
StuI	AGGCCT	1 cut(s)	553
StyI	CCWWGG	3 cut(s)	605, 650, 866
TaaI	ACNGT	3 cut(s)	383, 496, 562
TasI	AATT	4 cut(s)	361, 417, 630, 767
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	5 cut(s)	22, 288, 388, 694, 781
TseFI	GTSAC	2 cut(s)	481, 585
TseI	GCWGC	2 cut(s)	572, 803
Tsp45I	GTSAC	2 cut(s)	481, 585
TspDTI	ATGAA	3 cut(s)	87, 138, 630
TspGWI	ACGGA	1 cut(s)	828
TspRI	CASTG	5 cut(s)	22, 288, 388, 694, 781
Van91I	CCANNNNNTGG	1 cut(s)	872
XapI	RAATTY	1 cut(s)	630
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmaJI	CCTAGG	1 cut(s)	605
XspI	CTAG	3 cut(s)	56, 579, 606
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.