Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

9235885 .. 9238454

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG124200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACTTCGGCTACCTCCCATCTATTCAAGACCTTATCAATAACAGCAGACTCATGCGGTCTCTCTCTCCCTCACCTCTTCACCGCCAAAACCCCCAACGCATTTCTCCCAATCCCAACCAGACCCACCACCAAGCTCCACTTCTCCCACTCCTTTTCACCTCTCAGGAGCAAGACCCAGTTCTCTTCCATAGTCTCATACGTGGCCCAGACCTCGGATTGGGCCCAGCAGGAGGAGGACAGCCCGGTTGCCATTGATGGAGCTGCGGAGGAGAGCGGTGAGGAGGGGGTGTTTGAGGAGAGAGAAGAAGAGGTGGCCCCTGTTGAGCCGCCCGAGGAGGCCAAGATTTTTGTTGGGAATTTGCCCTTTGATGTTGACAGTGAGAGATTGGCTCAGCTGTTTGAGAAGGCCGGAGTTGTCGAGATTGCTGAGGTTATTTACAACAGGGACACTGACCAGAGCCGTGGATTCGGGTTTGTGACTATGAGCACTGTGGAAGAAGCTGACAGGGCTGTGGAACAGTTCAGTGGCTACGATTTGAATGGAAGACTCTTGACTGTCAATAAGGCTGCTCCAAGAGGAACACGCGCAGAGCGCCCACCGCGTTCTTATCAATCTTCATACAGAATCTATGTTGGTAACCTGCCATGGAATGTGGATAATGGTGAACTTGAGCAGCTCTTCAGTAAACACGGTAGCGTGGTGGATGCGCGTGTAGTCTTTGACAGAGAAACTGGACGATCGCGTGGTTTTGGCTTTGTAACAATGGCCAGTGAATCTGATATGAATGATGCCATTGGTGCTCTGGATGGAGAGGTATCAGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

276

Amino Acids

30.36

Weight (kDa)

4.64

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	116 - 185	1.8e-19	RNA recognition motif
RRM_1	PF00076	210 - 272	4.3e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccBSI	CCGCTC	1 cut(s)	276
AccII	CGCG	4 cut(s)	588, 604, 712, 745
AciI	CCGC	6 cut(s)	57, 84, 266, 276, 329, 602
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	667
AfiI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
AgsI	TTSAA	2 cut(s)	28, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	5 cut(s)	136, 263, 397, 503, 679
AluI	AGCT	5 cut(s)	136, 263, 397, 503, 679
Alw21I	GWGCWC	2 cut(s)	491, 805
Alw26I	GTCTC	2 cut(s)	65, 199
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	6 cut(s)	204, 222, 315, 339, 408, 768
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	263, 569, 676
ApoI	RAATTY	1 cut(s)	358
AspLEI	GCGC	3 cut(s)	590, 597, 712
AspS9I	GGNCC	4 cut(s)	205, 222, 223, 316
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	5 cut(s)	65, 73, 150, 290, 677
AvaI	CYCGRG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	553
Bbv12I	GWGCWC	2 cut(s)	491, 805
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	250, 556, 688
BccI	CCATC	3 cut(s)	27, 251, 803
BceAI	ACGGC	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	65, 199
BfoI	RGCGCY	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	651
BisI	GCNGC	4 cut(s)	264, 329, 570, 677
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	4 cut(s)	265, 330, 571, 678
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	4 cut(s)	205, 222, 223, 316
BmiI	GGNNCC	2 cut(s)	224, 318
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	697, 781
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	553
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	202
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	4 cut(s)	213, 333, 463, 647
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 219, 232
Bse1I	ACTGG	3 cut(s)	178, 739, 771
BseDI	CCNNGG	4 cut(s)	213, 333, 463, 647
BseGI	GGATG	2 cut(s)	712, 814
BseLI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
BseMII	CTCAG	3 cut(s)	178, 407, 420
BseNI	ACTGG	3 cut(s)	178, 739, 771
BseRI	GAGGAG	5 cut(s)	248, 284, 296, 311, 350
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	250, 556, 688
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	4 cut(s)	588, 604, 712, 745
Bsh1285I	CGRYCG	1 cut(s)	743
BshFI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BsiEI	CGRYCG	1 cut(s)	743
BsiHKAI	GWGCWC	2 cut(s)	491, 805
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	245, 411
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
BsmAI	GTCTC	2 cut(s)	65, 199
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	332
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	226, 491, 805
Bsp143I	GATC	1 cut(s)	740
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	6 cut(s)	57, 84, 266, 276, 329, 602
BspANI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BspCNI	CTCAG	3 cut(s)	177, 406, 421
BspFNI	CGCG	4 cut(s)	588, 604, 712, 745
BspLI	GGNNCC	2 cut(s)	224, 318
BspMI	ACCTGC	1 cut(s)	651
BspQI	GCTCTTC	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	178, 739, 771
BssECI	CCNNGG	4 cut(s)	213, 333, 463, 647
BssMI	GATC	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	5 cut(s)	380, 493, 522, 559, 695
Bst6I	CTCTTC	4 cut(s)	83, 190, 303, 686
BstBAI	YACGTR	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	164, 393, 429
BstDSI	CCRYGG	2 cut(s)	463, 647
BstEII	GGTNACC	1 cut(s)	638
BstF5I	GGATG	2 cut(s)	712, 814
BstFNI	CGCG	4 cut(s)	588, 604, 712, 745
BstH2I	RGCGCY	1 cut(s)	598
BstHHI	GCGC	3 cut(s)	590, 597, 712
BstKTI	GATC	1 cut(s)	743
BstMAI	GTCTC	2 cut(s)	65, 199
BstMBI	GATC	1 cut(s)	740
BstMCI	CGRYCG	1 cut(s)	743
BstMWI	GCNNNNNNNGC	4 cut(s)	509, 594, 601, 800
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	4 cut(s)	588, 604, 712, 745
BstV1I	GCAGC	3 cut(s)	250, 556, 688
BstV2I	GAAGAC	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuRI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BtgI	CCRYGG	2 cut(s)	463, 647
BtsCI	GGATG	2 cut(s)	712, 814
BtsIMutI	CAGTG	5 cut(s)	385, 450, 489, 532, 778
BveI	ACCTGC	1 cut(s)	651
CfoI	GCGC	3 cut(s)	590, 597, 712
Cfr13I	GGNCC	4 cut(s)	205, 222, 223, 316
CviAII	CATG	2 cut(s)	54, 648
DdeI	CTNAG	3 cut(s)	164, 393, 429
DpnI	GATC	1 cut(s)	742
DpnII	GATC	1 cut(s)	740
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	4 cut(s)	83, 190, 303, 686
EarI	CTCTTC	4 cut(s)	83, 190, 303, 686
Eco130I	CCWWGG	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	667
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	2 cut(s)	57, 651
FaiI	YATR	8 cut(s)	55, 191, 199, 485, 622, 633, 649, 785
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	53, 647
Fnu4HI	GCNGC	4 cut(s)	264, 329, 570, 677
FokI	GGATG	2 cut(s)	719, 821
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	264, 329, 570, 677
GlaI	GCGC	3 cut(s)	589, 596, 711
GluI	GCNGC	4 cut(s)	264, 329, 570, 677
GsaI	CCCAGC	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	598
HaeIII	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
HapII	CCGG	2 cut(s)	245, 411
HhaI	GCGC	3 cut(s)	590, 597, 712
Hin1II	CATG	2 cut(s)	57, 651
Hin6I	GCGC	3 cut(s)	588, 595, 710
HinP1I	GCGC	3 cut(s)	588, 595, 710
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	50, 468, 549, 627, 776
HpaII	CCGG	2 cut(s)	245, 411
HphI	GGTGA	5 cut(s)	65, 73, 150, 290, 677
Hpy166II	GTNNAC	3 cut(s)	376, 668, 689
Hpy188I	TCNGA	3 cut(s)	217, 781, 823
Hpy188III	TCNNGA	5 cut(s)	28, 166, 421, 553, 806
Hpy8I	GTNNAC	3 cut(s)	376, 668, 689
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	5 cut(s)	380, 493, 522, 559, 695
HpyCH4IV	ACGT	1 cut(s)	201
HpyF10VI	GCNNNNNNNGC	4 cut(s)	509, 594, 601, 800
HpyF3I	CTNAG	3 cut(s)	164, 393, 429
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	2 cut(s)	57, 651
HspAI	GCGC	3 cut(s)	588, 595, 710
Kzo9I	GATC	1 cut(s)	740
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	4 cut(s)	141, 168, 260, 577
Lsp1109I	GCAGC	3 cut(s)	250, 556, 688
LweI	GCATC	2 cut(s)	697, 781
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	3 cut(s)	478, 638, 760
MalI	GATC	1 cut(s)	742
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	1 cut(s)	740
MboII	GAAGA	8 cut(s)	70, 177, 317, 320, 509, 558, 609, 673
MhlI	GDGCHC	3 cut(s)	226, 491, 805
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	2 cut(s)	44, 543
Mox20I	TGGCCA	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	770
MseI	TTAA	1 cut(s)	829
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	245, 411
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	4 cut(s)	588, 604, 712, 745
MwoI	GCNNNNNNNGC	4 cut(s)	509, 594, 601, 800
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	1 cut(s)	740
NlaIII	CATG	2 cut(s)	57, 651
NlaIV	GGNNCC	2 cut(s)	224, 318
NmuCI	GTSAC	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	686
PfeI	GAWTC	3 cut(s)	468, 627, 776
PkrI	GCNGC	4 cut(s)	265, 330, 571, 678
Ple19I	CGATCG	1 cut(s)	743
PleI	GAGTC	2 cut(s)	44, 543
PpsI	GAGTC	2 cut(s)	44, 543
Ppu21I	YACGTR	1 cut(s)	202
PspEI	GGTNACC	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	224, 318
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	4 cut(s)	205, 222, 223, 316
PvuI	CGATCG	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	1 cut(s)	829
SatI	GCNGC	4 cut(s)	264, 329, 570, 677
Sau3AI	GATC	1 cut(s)	740
Sau96I	GGNCC	4 cut(s)	205, 222, 223, 316
SchI	GAGTC	2 cut(s)	44, 543
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	3 cut(s)	226, 491, 805
SfaNI	GCATC	2 cut(s)	697, 781
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	6 cut(s)	57, 84, 266, 276, 329, 602
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	5 cut(s)	380, 493, 522, 559, 695
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	358
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	3 cut(s)	468, 627, 776
Tru1I	TTAA	1 cut(s)	829
Tru9I	TTAA	1 cut(s)	829
TscAI	CASTG	5 cut(s)	385, 457, 496, 532, 778
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	263, 569, 676
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	2 cut(s)	609, 800
TspRI	CASTG	5 cut(s)	385, 457, 496, 532, 778
XapI	RAATTY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.