Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Forward (+)

57324071 .. 57326573

Gene Structure 2503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACTTCCGCAACCTCCCATCTATTCAAGACCTTATCAATAACAGCAGATTCATGCGGTCTCTCTCTCCCTCACCTCTTCACCGCCAAAACCCCCAACGCATTTCTCCCAATCCCAACCAGACCCACCACCAAGCTCCACCTCTCCCACTCCTTTTCACCTCTCAGGAGCAAGACCCAGTTCTCTTCCATAGTCTCATACGTGGCCCAGACCTCGGATTGGGCCCAGCAGGAGGAGGACAGCCCGGTTGCCATTGATGGAGCTGCGGAGGAGAGCGGTGAGGAGGGGGTGTTTGAGGAGAGAGAAGAAGAGGTGGCCCCTGTTGAGCCGCCCGAGGAGGCCAAGATTTTTGTTGGGAATTTGCCCTTTGATGTTGACAGTGAGAGATTGGCTCAGCTGTTTGAGAAGGCCGGAGTTGTCGAGATTGCTGAGGTTATTTACAACAGGGACACTGACCAGAGCCGTGGATTCGGGTTTGTGACTATGAGCACTGTGGAAGAAGCTGACAGGGCTGTGGAACAGTTCAGTCGCTACGATTTGAATGGAAGACTCTTGACAGTCAATAAGGCTGCTCCAAGAGGAACACGCGCTGAGCGCCCACCGCGTTCTTATCAATCTTCATACAGAATCTATGTTGGTAACCTGCCATGGAATGTGGATAATGGTGAACTTGAGCAGCTCTTCAGTAAACACGGTAGCGTGGTAGATGCGCGTGTAGTCTTTGACAGAGAAACTGGACGATCACGTGGTTTTGGCTTTGTAACAATGGCCAGTGAATCTGATATGAATGATGCCATTGGTGCTCTGGATGGAGAGAGTTTGGACGGCAGGGCGATCAGAGTAAATGTTGCCGAGGAAAGACAAAGGCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

291

Amino Acids

32.28

Weight (kDa)

4.86

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	116 - 185	1.2e-18	RNA recognition motif
RRM_1	PF00076	210 - 280	1.8e-23	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	651
AccBSI	CCGCTC	1 cut(s)	276
AccII	CGCG	3 cut(s)	588, 604, 712
AciI	CCGC	7 cut(s)	9, 57, 84, 266, 276, 329, 602
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	667
AcvI	CACGTG	1 cut(s)	746
AfiI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
AgsI	TTSAA	2 cut(s)	28, 541
AluBI	AGCT	5 cut(s)	136, 263, 397, 503, 679
AluI	AGCT	5 cut(s)	136, 263, 397, 503, 679
Alw21I	GWGCWC	2 cut(s)	491, 805
Alw26I	GTCTC	2 cut(s)	65, 199
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	6 cut(s)	204, 222, 315, 339, 408, 768
ApaI	GGGCCC	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	263, 569, 676
ApoI	RAATTY	1 cut(s)	358
AspLEI	GCGC	4 cut(s)	590, 597, 712, 870
AspS9I	GGNCC	4 cut(s)	205, 222, 223, 316
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	5 cut(s)	65, 73, 150, 290, 677
AvaI	CYCGRG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	226
BbrPI	CACGTG	1 cut(s)	746
BbsI	GAAGAC	1 cut(s)	553
Bbv12I	GWGCWC	2 cut(s)	491, 805
BbvCI	CCTCAGC	1 cut(s)	429
BbvI	GCAGC	3 cut(s)	250, 556, 688
BccI	CCATC	3 cut(s)	27, 251, 803
BceAI	ACGGC	2 cut(s)	447, 841
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	65, 199
BfoI	RGCGCY	2 cut(s)	598, 871
BfuAI	ACCTGC	1 cut(s)	651
BisI	GCNGC	4 cut(s)	264, 329, 570, 677
BlpI	GCTNAGC	2 cut(s)	393, 591
BlsI	GCNGC	4 cut(s)	265, 330, 571, 678
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	4 cut(s)	205, 222, 223, 316
BmiI	GGNNCC	2 cut(s)	224, 318
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	697, 781
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	553
BplI	GAGNNNNNCTC	2 cut(s)	376, 408
Bpu10I	CCTNAGC	1 cut(s)	429
Bpu1102I	GCTNAGC	2 cut(s)	393, 591
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	2 cut(s)	202, 746
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	5 cut(s)	213, 333, 463, 647, 852
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 219, 232
Bse1I	ACTGG	3 cut(s)	178, 739, 771
BseDI	CCNNGG	5 cut(s)	213, 333, 463, 647, 852
BseGI	GGATG	1 cut(s)	814
BseLI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
BseMII	CTCAG	4 cut(s)	178, 407, 420, 582
BseNI	ACTGG	3 cut(s)	178, 739, 771
BseRI	GAGGAG	5 cut(s)	248, 284, 296, 311, 350
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	3 cut(s)	250, 556, 688
BseYI	CCCAGC	1 cut(s)	225
Bsh1236I	CGCG	3 cut(s)	588, 604, 712
BshFI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BsiHKAI	GWGCWC	2 cut(s)	491, 805
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	245, 411
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	214, 219, 232
BsmAI	GTCTC	2 cut(s)	65, 199
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
Bso31I	GGTCTC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	332
Bsp120I	GGGCCC	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	226, 491, 805
Bsp143I	GATC	2 cut(s)	740, 834
Bsp1720I	GCTNAGC	2 cut(s)	393, 591
Bsp19I	CCATGG	1 cut(s)	647
BspACI	CCGC	7 cut(s)	9, 57, 84, 266, 276, 329, 602
BspANI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BspCNI	CTCAG	4 cut(s)	177, 406, 421, 583
BspFNI	CGCG	3 cut(s)	588, 604, 712
BspLI	GGNNCC	2 cut(s)	224, 318
BspMI	ACCTGC	1 cut(s)	651
BspQI	GCTCTTC	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	276
BsrI	ACTGG	3 cut(s)	178, 739, 771
BssECI	CCNNGG	5 cut(s)	213, 333, 463, 647, 852
BssMI	GATC	2 cut(s)	740, 834
BssT1I	CCWWGG	1 cut(s)	647
Bst4CI	ACNGT	5 cut(s)	380, 493, 522, 559, 695
Bst6I	CTCTTC	4 cut(s)	83, 190, 303, 686
BstBAI	YACGTR	2 cut(s)	202, 746
BstDEI	CTNAG	4 cut(s)	164, 393, 429, 591
BstDSI	CCRYGG	2 cut(s)	463, 647
BstEII	GGTNACC	1 cut(s)	638
BstF5I	GGATG	1 cut(s)	814
BstFNI	CGCG	3 cut(s)	588, 604, 712
BstH2I	RGCGCY	2 cut(s)	598, 871
BstHHI	GCGC	4 cut(s)	590, 597, 712, 870
BstKTI	GATC	2 cut(s)	743, 837
BstMAI	GTCTC	2 cut(s)	65, 199
BstMBI	GATC	2 cut(s)	740, 834
BstMWI	GCNNNNNNNGC	4 cut(s)	509, 594, 601, 800
BstPI	GGTNACC	1 cut(s)	638
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	3 cut(s)	588, 604, 712
BstV1I	GCAGC	3 cut(s)	250, 556, 688
BstV2I	GAAGAC	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	464
BsuRI	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
BtgI	CCRYGG	2 cut(s)	463, 647
BtsCI	GGATG	1 cut(s)	814
BtsIMutI	CAGTG	4 cut(s)	385, 450, 489, 778
BveI	ACCTGC	1 cut(s)	651
CfoI	GCGC	4 cut(s)	590, 597, 712, 870
Cfr13I	GGNCC	4 cut(s)	205, 222, 223, 316
CviAII	CATG	2 cut(s)	54, 648
DdeI	CTNAG	4 cut(s)	164, 393, 429, 591
DpnI	GATC	2 cut(s)	742, 836
DpnII	GATC	2 cut(s)	740, 834
EaeI	YGGCCR	1 cut(s)	768
Eam1104I	CTCTTC	4 cut(s)	83, 190, 303, 686
EarI	CTCTTC	4 cut(s)	83, 190, 303, 686
Eco130I	CCWWGG	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	667
Eco72I	CACGTG	1 cut(s)	746
Eco88I	CYCGRG	1 cut(s)	332
Eco91I	GGTNACC	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	647
FaeI	CATG	2 cut(s)	57, 651
FaiI	YATR	8 cut(s)	55, 191, 199, 485, 622, 633, 649, 785
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	53, 647
Fnu4HI	GCNGC	4 cut(s)	264, 329, 570, 677
FokI	GGATG	1 cut(s)	821
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	264, 329, 570, 677
GlaI	GCGC	4 cut(s)	589, 596, 711, 869
GluI	GCNGC	4 cut(s)	264, 329, 570, 677
GsaI	CCCAGC	1 cut(s)	229
HaeII	RGCGCY	2 cut(s)	598, 871
HaeIII	GGCC	6 cut(s)	206, 224, 317, 341, 410, 770
HapII	CCGG	2 cut(s)	245, 411
HhaI	GCGC	4 cut(s)	590, 597, 712, 870
Hin1II	CATG	2 cut(s)	57, 651
Hin6I	GCGC	4 cut(s)	588, 595, 710, 868
HinP1I	GCGC	4 cut(s)	588, 595, 710, 868
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	50, 468, 549, 627, 776
HpaII	CCGG	2 cut(s)	245, 411
HphI	GGTGA	5 cut(s)	65, 73, 150, 290, 677
Hpy166II	GTNNAC	3 cut(s)	376, 668, 689
Hpy188I	TCNGA	3 cut(s)	217, 781, 839
Hpy188III	TCNNGA	5 cut(s)	28, 166, 421, 553, 806
Hpy8I	GTNNAC	3 cut(s)	376, 668, 689
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	5 cut(s)	380, 493, 522, 559, 695
HpyCH4IV	ACGT	2 cut(s)	201, 745
HpyF10VI	GCNNNNNNNGC	4 cut(s)	509, 594, 601, 800
HpyF3I	CTNAG	4 cut(s)	164, 393, 429, 591
HpySE526I	ACGT	2 cut(s)	201, 745
Hsp92II	CATG	2 cut(s)	57, 651
HspAI	GCGC	4 cut(s)	588, 595, 710, 868
Kzo9I	GATC	2 cut(s)	740, 834
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	4 cut(s)	141, 168, 260, 577
Lsp1109I	GCAGC	3 cut(s)	250, 556, 688
LweI	GCATC	2 cut(s)	697, 781
MaeII	ACGT	2 cut(s)	201, 745
MaeIII	GTNAC	3 cut(s)	478, 638, 760
MalI	GATC	2 cut(s)	742, 836
MbiI	CCGCTC	1 cut(s)	276
MboI	GATC	2 cut(s)	740, 834
MboII	GAAGA	8 cut(s)	70, 177, 317, 320, 509, 558, 609, 673
MhlI	GDGCHC	3 cut(s)	226, 491, 805
MlsI	TGGCCA	1 cut(s)	770
MluCI	AATT	1 cut(s)	358
MluNI	TGGCCA	1 cut(s)	770
MlyI	GAGTC	1 cut(s)	543
Mox20I	TGGCCA	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	770
Msp20I	TGGCCA	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	245, 411
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	3 cut(s)	588, 604, 712
MwoI	GCNNNNNNNGC	4 cut(s)	509, 594, 601, 800
NciI	CCSGG	1 cut(s)	245
NcoI	CCATGG	1 cut(s)	647
NdeII	GATC	2 cut(s)	740, 834
NlaIII	CATG	2 cut(s)	57, 651
NlaIV	GGNNCC	2 cut(s)	224, 318
NmuCI	GTSAC	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	686
PfeI	GAWTC	4 cut(s)	50, 468, 627, 776
PkrI	GCNGC	4 cut(s)	265, 330, 571, 678
PleI	GAGTC	1 cut(s)	543
PmaCI	CACGTG	1 cut(s)	746
PmlI	CACGTG	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	543
Ppu21I	YACGTR	2 cut(s)	202, 746
PspCI	CACGTG	1 cut(s)	746
PspEI	GGTNACC	1 cut(s)	638
PspFI	CCCAGC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	224, 318
PspOMI	GGGCCC	1 cut(s)	222
PspPI	GGNCC	4 cut(s)	205, 222, 223, 316
PvuII	CAGCTG	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	686
SatI	GCNGC	4 cut(s)	264, 329, 570, 677
Sau3AI	GATC	2 cut(s)	740, 834
Sau96I	GGNCC	4 cut(s)	205, 222, 223, 316
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	3 cut(s)	226, 491, 805
SfaNI	GCATC	2 cut(s)	697, 781
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	7 cut(s)	9, 57, 84, 266, 276, 329, 602
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	647
TaaI	ACNGT	5 cut(s)	380, 493, 522, 559, 695
TaiI	ACGT	2 cut(s)	204, 748
TaqI	TCGA	1 cut(s)	420
TasI	AATT	1 cut(s)	358
TauI	GCSGC	1 cut(s)	331
TfiI	GAWTC	4 cut(s)	50, 468, 627, 776
TscAI	CASTG	4 cut(s)	385, 457, 496, 778
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	263, 569, 676
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	3 cut(s)	42, 609, 800
TspRI	CASTG	4 cut(s)	385, 457, 496, 778
XapI	RAATTY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.