Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

1577036 .. 1578850

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1020900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTTCTGCAACCGCCGCTCTCCTGAAGCCACTGTCAATCTCCGAAACCTGCCTCGCCGCCGTGCCACCCGCCCGCTTCGCGCAAAAAAACCAATACCCAGTTCTCTCACTCCTCTCAAAACCCACCAAGCTCGCACAAATCTCCTGCTCCTTCACTCCCTCTCTCTCCTCGTTTCTCTCTCTAAAGCACAAGTCTTTGCCTCTCCTCCGCGTGGCTCAGACCTCCGACTGGGCTCAGGAGGAGGAAGTAAAGGAAGAGGCCGAAAGCGCTGAGGGGGAGGGAGCAGAGGAGAGCTCCGGCGACGGAGTTTTGGCGGTCGGCGAAGAGGAATACTATCCCGAGCCGCCGGAGGAGGCCAAGCTCTATGTGGGTAATTTGCCTTATGATGTTGACAGTGAAAAGCTTGCTAATCTTTTCAATGATGCTGGAGTTGTTGAGATTGCTGAGGTGATTTACAATAGGGAAACTGATCAGAGCAGAGGATTTGGGTTTGTGACTATGAGCACTGTCGAAGAAGCTGAGAAGGCTGTGGAGTTGTTCCACCGTTACGACATAGGTGGGAGGGCTTTGACTGTAAACAAGGCTGCGCCTAGAGGGTCGCGCCCTGAAAGGCCTATCCGAACGAATGAACCTTCATTCAGAATCTATGTTGGTAATCTGCCATGGCAAGTGGATGATTCTCGTTTGGAGCAGGTTTTCAGTGAACATGGAAAGGTGGTTAGTGCCAGGGTAGTTTATGACCGCGAATCAGGGCGTTCCCGCGGGTTTGGTTTTGTTTCATTCTCTAGCGAGACAGAAGTGGAAGATGCCATTGCTGCCCTTGATGGACAGAGTTTGGATGGCAGATCAATCCGAGTAAACGTTGCAGAAGAGCGACCAAGGCGTGGCTCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

300

Amino Acids

32.84

Weight (kDa)

4.83

Isoelectric Point (pI)

51.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	122 - 191	5.6e-19	RNA recognition motif
RRM_1	PF00076	216 - 286	4.2e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	59, 685
AccB7I	CCANNNNNTGG	1 cut(s)	887
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	5 cut(s)	83, 213, 604, 747, 765
AclI	AACGTT	1 cut(s)	864
AcuI	CTGAAG	1 cut(s)	47
AfeI	AGCGCT	1 cut(s)	271
AfiI	CCNNNNNNNGG	3 cut(s)	214, 231, 887
AgsI	TTSAA	1 cut(s)	421
AjnI	CCWGG	1 cut(s)	728
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	5 cut(s)	133, 297, 364, 406, 521
AluI	AGCT	5 cut(s)	133, 297, 364, 406, 521
Alw21I	GWGCWC	2 cut(s)	299, 509
Alw26I	GTCTC	1 cut(s)	788
Ama87I	CYCGRG	1 cut(s)	341
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	3 cut(s)	261, 357, 614
ApeKI	GCWGC	2 cut(s)	587, 818
AspLEI	GCGC	4 cut(s)	85, 272, 592, 606
AsuHPI	GGTGA	1 cut(s)	463
AvaI	CYCGRG	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	238, 299
Bbv12I	GWGCWC	2 cut(s)	299, 509
BbvCI	CCTCAGC	2 cut(s)	273, 447
BbvI	GCAGC	2 cut(s)	574, 805
BccI	CCATC	2 cut(s)	821, 836
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	730
BclI	TGATCA	1 cut(s)	472
BcoDI	GTCTC	1 cut(s)	788
BfaI	CTAG	2 cut(s)	594, 789
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	2 cut(s)	59, 685
BisI	GCNGC	5 cut(s)	18, 60, 347, 588, 819
BlsI	GCNGC	5 cut(s)	19, 61, 348, 589, 820
Bme1390I	CCNGG	1 cut(s)	730
BmeT110I	CYCGRG	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	730
BmrI	ACTGGG	2 cut(s)	95, 241
BmsI	GCATC	2 cut(s)	415, 799
BmuI	ACTGGG	2 cut(s)	95, 241
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	3 cut(s)	237, 273, 447
BsaJI	CCNNGG	4 cut(s)	665, 729, 763, 881
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 231, 887
Bse1I	ACTGG	2 cut(s)	101, 236
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	4 cut(s)	665, 729, 763, 881
BseGI	GGATG	2 cut(s)	682, 847
BseLI	CCNNNNNNNGG	3 cut(s)	214, 231, 887
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	5 cut(s)	233, 251, 264, 438, 513
BseNI	ACTGG	2 cut(s)	101, 236
BseRI	GAGGAG	6 cut(s)	104, 160, 197, 257, 305, 368
BseXI	GCAGC	2 cut(s)	574, 805
Bsh1236I	CGCG	5 cut(s)	83, 213, 604, 747, 765
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	3 cut(s)	263, 359, 616
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	299, 509
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	300, 350
BslI	CCNNNNNNNGG	3 cut(s)	214, 231, 887
BsmAI	GTCTC	1 cut(s)	788
BsnI	GGCC	3 cut(s)	263, 359, 616
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	3 cut(s)	238, 299, 509
Bsp143I	GATC	2 cut(s)	472, 848
Bsp19I	CCATGG	1 cut(s)	665
BspANI	GGCC	3 cut(s)	263, 359, 616
BspCNI	CTCAG	5 cut(s)	232, 250, 265, 439, 514
BspFNI	CGCG	5 cut(s)	83, 213, 604, 747, 765
BspMI	ACCTGC	2 cut(s)	59, 685
BspQI	GCTCTTC	1 cut(s)	867
BsrBI	CCGCTC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	2 cut(s)	101, 236
BssECI	CCNNGG	4 cut(s)	665, 729, 763, 881
BssMI	GATC	2 cut(s)	472, 848
BssT1I	CCWWGG	2 cut(s)	665, 881
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	5 cut(s)	36, 398, 511, 548, 577
Bst6I	CTCTTC	3 cut(s)	252, 321, 867
BstC8I	GCNNGC	3 cut(s)	76, 135, 408
BstDEI	CTNAG	5 cut(s)	219, 237, 273, 447, 522
BstDSI	CCRYGG	2 cut(s)	665, 763
BstF5I	GGATG	2 cut(s)	682, 847
BstFNI	CGCG	5 cut(s)	83, 213, 604, 747, 765
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	4 cut(s)	85, 272, 592, 606
BstKTI	GATC	2 cut(s)	475, 851
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	2 cut(s)	472, 848
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 80, 269, 527, 818, 883
BstNI	CCWGG	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	728
BstUI	CGCG	5 cut(s)	83, 213, 604, 747, 765
BstV1I	GCAGC	2 cut(s)	574, 805
BsuRI	GGCC	3 cut(s)	263, 359, 616
BtgI	CCRYGG	2 cut(s)	665, 763
BtsCI	GGATG	2 cut(s)	682, 847
BtsIMutI	CAGTG	4 cut(s)	32, 403, 507, 709
BveI	ACCTGC	2 cut(s)	59, 685
Cac8I	GCNNGC	3 cut(s)	76, 135, 408
CfoI	GCGC	4 cut(s)	85, 272, 592, 606
Cfr42I	CCGCGG	1 cut(s)	766
CviAII	CATG	2 cut(s)	666, 710
DdeI	CTNAG	5 cut(s)	219, 237, 273, 447, 522
DpnI	GATC	2 cut(s)	474, 850
DpnII	GATC	2 cut(s)	472, 848
Eam1104I	CTCTTC	3 cut(s)	252, 321, 867
EarI	CTCTTC	3 cut(s)	252, 321, 867
Ecl136II	GAGCTC	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	665, 881
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	2 cut(s)	238, 299
Eco47III	AGCGCT	1 cut(s)	271
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	665, 881
EcoT38I	GRGCYC	2 cut(s)	238, 299
ErhI	CCWWGG	2 cut(s)	665, 881
FaeI	CATG	2 cut(s)	669, 713
FaiI	YATR	8 cut(s)	369, 387, 503, 557, 651, 667, 711, 741
FatI	CATG	2 cut(s)	665, 709
FauI	CCCGC	4 cut(s)	79, 83, 758, 770
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	5 cut(s)	18, 60, 347, 588, 819
FokI	GGATG	2 cut(s)	689, 854
FriOI	GRGCYC	2 cut(s)	238, 299
Fsp4HI	GCNGC	5 cut(s)	18, 60, 347, 588, 819
FspBI	CTAG	2 cut(s)	594, 789
GlaI	GCGC	4 cut(s)	84, 271, 591, 605
GluI	GCNGC	5 cut(s)	18, 60, 347, 588, 819
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	263, 359, 616
HapII	CCGG	2 cut(s)	300, 350
HhaI	GCGC	4 cut(s)	85, 272, 592, 606
Hin1II	CATG	2 cut(s)	669, 713
Hin6I	GCGC	4 cut(s)	83, 270, 590, 604
HinP1I	GCGC	4 cut(s)	83, 270, 590, 604
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	3 cut(s)	645, 680, 749
HpaII	CCGG	2 cut(s)	300, 350
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	4 cut(s)	394, 580, 707, 862
Hpy188I	TCNGA	7 cut(s)	46, 222, 229, 477, 623, 644, 857
Hpy188III	TCNNGA	3 cut(s)	25, 239, 341
Hpy8I	GTNNAC	4 cut(s)	394, 580, 707, 862
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	163, 520, 645
HpyCH4III	ACNGT	5 cut(s)	36, 398, 511, 548, 577
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	2 cut(s)	11, 869
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 80, 269, 527, 818, 883
HpyF3I	CTNAG	5 cut(s)	219, 237, 273, 447, 522
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	2 cut(s)	669, 713
HspAI	GCGC	4 cut(s)	83, 270, 590, 604
Ksp22I	TGATCA	1 cut(s)	472
KspI	CCGCGG	1 cut(s)	766
Kzo9I	GATC	2 cut(s)	472, 848
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	4 cut(s)	155, 284, 302, 691
Lsp1109I	GCAGC	2 cut(s)	574, 805
LweI	GCATC	2 cut(s)	415, 799
MaeI	CTAG	2 cut(s)	594, 789
MaeII	ACGT	1 cut(s)	864
MaeIII	GTNAC	2 cut(s)	496, 548
MalI	GATC	2 cut(s)	474, 850
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	472, 848
MboII	GAAGA	5 cut(s)	269, 338, 527, 818, 884
MhlI	GDGCHC	3 cut(s)	238, 299, 509
MluCI	AATT	1 cut(s)	376
MmeI	TCCRAC	1 cut(s)	252
MseI	TTAA	1 cut(s)	898
MspA1I	CMGCKG	1 cut(s)	765
MspI	CCGG	2 cut(s)	300, 350
MspR9I	CCNGG	1 cut(s)	730
MvaI	CCWGG	1 cut(s)	730
MvnI	CGCG	5 cut(s)	83, 213, 604, 747, 765
MwoI	GCNNNNNNNGC	6 cut(s)	17, 80, 269, 527, 818, 883
NcoI	CCATGG	1 cut(s)	665
NdeII	GATC	2 cut(s)	472, 848
NlaIII	CATG	2 cut(s)	669, 713
NmuCI	GTSAC	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	867
PfeI	GAWTC	3 cut(s)	645, 680, 749
PflMI	CCANNNNNTGG	1 cut(s)	887
PkrI	GCNGC	5 cut(s)	19, 61, 348, 589, 820
Psp124BI	GAGCTC	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
SacI	GAGCTC	1 cut(s)	299
SacII	CCGCGG	1 cut(s)	766
SapI	GCTCTTC	1 cut(s)	867
SaqAI	TTAA	1 cut(s)	898
SatI	GCNGC	5 cut(s)	18, 60, 347, 588, 819
Sau3AI	GATC	2 cut(s)	472, 848
ScrFI	CCNGG	1 cut(s)	730
SduI	GDGCHC	3 cut(s)	238, 299, 509
SfaNI	GCATC	2 cut(s)	415, 799
Sfr303I	CCGCGG	1 cut(s)	766
SgrBI	CCGCGG	1 cut(s)	766
Sse9I	AATT	1 cut(s)	376
SseBI	AGGCCT	1 cut(s)	616
SspMI	CTAG	2 cut(s)	594, 789
SstI	GAGCTC	1 cut(s)	299
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	1 cut(s)	728
StyI	CCWWGG	2 cut(s)	665, 881
TaaI	ACNGT	5 cut(s)	36, 398, 511, 548, 577
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	1 cut(s)	513
TasI	AATT	1 cut(s)	376
TauI	GCSGC	3 cut(s)	20, 62, 349
TfiI	GAWTC	3 cut(s)	645, 680, 749
Tru1I	TTAA	1 cut(s)	898
Tru9I	TTAA	1 cut(s)	898
TscAI	CASTG	4 cut(s)	39, 403, 514, 709
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	587, 818
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	3 cut(s)	627, 645, 771
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	4 cut(s)	39, 403, 514, 709
Van91I	CCANNNNNTGG	1 cut(s)	887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	2 cut(s)	594, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.