Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Forward (+)

3937985 .. 3941357

Gene Structure 3373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACTTCAGCTACCTCCCACCTATTCAAGACCCTATCAATAACAGCAGACTCATGCGCTCTCTCTCTCCCTCACCTCTTCTCCTCCAAAACCCCCAACGCATTTCTCTCCATCCCCACCAGACCCACCACCACCGCCAAGCTCCACCTCTCCCACTCCTTTGCTCCTCTCCGGAGCAAGACCCACTTCTCTTCCTTAGTCTCATACGTGGCCCAGACCTCGGATTGGGCCCAGCAGGAGGAGGACAGCCCAGTCGCCATTGATGGAGCTGAGGAGAGCGGCGAGGAGGGTGTGTTTGAGGAGAGAGAAGAGGAGGTGGCGCCGGTTGAGCCGCCGGAGGAGGCCAAGATTTTTGTTGGGAATTTGCCGTTTGATGTTGACAGTGAGAGACTGGCTCAGCTGTTTGAGAAGGCTGGAGTTGTCGAGATTGCTGAGGTTATTTACAACAGGGACACTGACCAGAGCCGTGGATTCGGGTTTGTGACTATGAGCACTGTGGAAGAAGCTGATAGGGCTGTGGAACAGTTCAGTCGCTACGATTTGAATGGAAGACTCTTGACTGTCAACAAGGCTGCTCCAAGAGGAACACGCGCAGAGCGTCCTCCGCGTTCTTTTGAATCTTCTTATAGAATCTATGTTGGTAACCTGCCATGGAATGTGGATAATGGTGAACTTGAACAGCTTTTCAGTAAACACGGTAGGGTGGTAGATGCGCGTGTAGTCTTTGACAGAGAAACTGGACGATCACGTGGTTTTGGCTTTGTAACAATGGCCAGTGAATCGGACATGAATGATGCCATTGGTGCTCTGGATGGAGAGAGTTTGGATGGCAGGGCAATCAGAGTAAATGTTGCCGAGGAAAGACAAAGGCGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

293

Amino Acids

32.43

Weight (kDa)

4.93

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	117 - 186	1.2e-18	RNA recognition motif
RRM_1	PF00076	211 - 281	1.8e-23	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc36I	ACCTGC	1 cut(s)	654
AccB1I	GGYRCC	1 cut(s)	319
AccBSI	CCGCTC	1 cut(s)	279
AccII	CGCG	3 cut(s)	591, 607, 715
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	4 cut(s)	135, 279, 332, 605
AcoI	YGGCCR	1 cut(s)	771
AcsI	RAATTY	1 cut(s)	361
AcvI	CACGTG	1 cut(s)	749
AcyI	GRCGYC	1 cut(s)	320
AfiI	CCNNNNNNNGG	3 cut(s)	220, 225, 238
AgsI	TTSAA	4 cut(s)	28, 544, 617, 677
AluBI	AGCT	6 cut(s)	11, 142, 269, 400, 506, 682
AluI	AGCT	6 cut(s)	11, 142, 269, 400, 506, 682
Alw21I	GWGCWC	2 cut(s)	494, 808
Alw26I	GTCTC	2 cut(s)	205, 382
Aor13HI	TCCGGA	1 cut(s)	171
AoxI	GGCC	4 cut(s)	210, 228, 342, 771
ApaI	GGGCCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	1 cut(s)	361
AspLEI	GCGC	5 cut(s)	59, 322, 593, 715, 873
AspS9I	GGNCC	3 cut(s)	211, 228, 229
AsuHPI	GGTGA	2 cut(s)	65, 680
BaeGI	GKGCMC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	773
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	232
BbrPI	CACGTG	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	556
Bbv12I	GWGCWC	2 cut(s)	494, 808
BbvCI	CCTCAGC	2 cut(s)	270, 432
BbvI	GCAGC	1 cut(s)	559
BccI	CCATC	4 cut(s)	119, 257, 806, 821
BceAI	ACGGC	2 cut(s)	352, 450
BcoDI	GTCTC	2 cut(s)	205, 382
BfoI	RGCGCY	2 cut(s)	323, 874
BfuAI	ACCTGC	1 cut(s)	654
BisI	GCNGC	3 cut(s)	280, 332, 573
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	3 cut(s)	281, 333, 574
BmgT120I	GGNCC	3 cut(s)	211, 228, 229
BmiI	GGNNCC	2 cut(s)	230, 321
BmrI	ACTGGG	1 cut(s)	245
BmsI	GCATC	2 cut(s)	700, 784
BmuI	ACTGGG	1 cut(s)	245
BpiI	GAAGAC	1 cut(s)	556
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
BpmI	CTGGAG	1 cut(s)	435
Bpu10I	CCTNAGC	2 cut(s)	270, 432
Bpu1102I	GCTNAGC	1 cut(s)	396
BsaAI	YACGTR	2 cut(s)	208, 749
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	4 cut(s)	219, 466, 650, 855
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 225, 238
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	4 cut(s)	251, 396, 742, 774
BseAI	TCCGGA	1 cut(s)	171
BseDI	CCNNGG	4 cut(s)	219, 466, 650, 855
BseGI	GGATG	3 cut(s)	111, 817, 832
BseLI	CCNNNNNNNGG	3 cut(s)	220, 225, 238
BseMII	CTCAG	3 cut(s)	261, 410, 423
BseNI	ACTGG	4 cut(s)	251, 396, 742, 774
BseRI	GAGGAG	8 cut(s)	73, 156, 254, 287, 299, 314, 326, 353
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	1 cut(s)	559
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	3 cut(s)	591, 607, 715
BshFI	GGCC	4 cut(s)	212, 230, 344, 773
BshNI	GGYRCC	1 cut(s)	319
BsiHKAI	GWGCWC	2 cut(s)	494, 808
BsiSI	CCGG	3 cut(s)	172, 323, 335
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	3 cut(s)	220, 225, 238
BsmAI	GTCTC	2 cut(s)	205, 382
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	4 cut(s)	212, 230, 344, 773
Bsp120I	GGGCCC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	232, 494, 808
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	743
Bsp1720I	GCTNAGC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	650
BspACI	CCGC	4 cut(s)	135, 279, 332, 605
BspANI	GGCC	4 cut(s)	212, 230, 344, 773
BspCNI	CTCAG	3 cut(s)	262, 409, 424
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	3 cut(s)	591, 607, 715
BspLI	GGNNCC	2 cut(s)	230, 321
BspMI	ACCTGC	1 cut(s)	654
BspT107I	GGYRCC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	4 cut(s)	251, 396, 742, 774
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	4 cut(s)	219, 466, 650, 855
BssMI	GATC	1 cut(s)	743
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	650
Bst4CI	ACNGT	5 cut(s)	383, 496, 525, 562, 698
Bst6I	CTCTTC	3 cut(s)	83, 196, 303
BstACI	GRCGYC	1 cut(s)	320
BstBAI	YACGTR	2 cut(s)	208, 749
BstDEI	CTNAG	4 cut(s)	196, 270, 396, 432
BstDSI	CCRYGG	2 cut(s)	466, 650
BstEII	GGTNACC	1 cut(s)	641
BstF5I	GGATG	3 cut(s)	111, 817, 832
BstFNI	CGCG	3 cut(s)	591, 607, 715
BstH2I	RGCGCY	2 cut(s)	323, 874
BstHHI	GCGC	5 cut(s)	59, 322, 593, 715, 873
BstKTI	GATC	1 cut(s)	746
BstMAI	GTCTC	2 cut(s)	205, 382
BstMBI	GATC	1 cut(s)	743
BstMWI	GCNNNNNNNGC	4 cut(s)	328, 512, 604, 803
BstPI	GGTNACC	1 cut(s)	641
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	3 cut(s)	591, 607, 715
BstV1I	GCAGC	1 cut(s)	559
BstV2I	GAAGAC	1 cut(s)	556
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuRI	GGCC	4 cut(s)	212, 230, 344, 773
BtgI	CCRYGG	2 cut(s)	466, 650
BtsCI	GGATG	3 cut(s)	111, 817, 832
BtsIMutI	CAGTG	4 cut(s)	388, 453, 492, 781
BveI	ACCTGC	1 cut(s)	654
CfoI	GCGC	5 cut(s)	59, 322, 593, 715, 873
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	3 cut(s)	211, 228, 229
CseI	GACGC	1 cut(s)	587
CviAII	CATG	3 cut(s)	54, 651, 787
DdeI	CTNAG	4 cut(s)	196, 270, 396, 432
DinI	GGCGCC	1 cut(s)	321
DpnI	GATC	1 cut(s)	745
DpnII	GATC	1 cut(s)	743
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	771
Eam1104I	CTCTTC	3 cut(s)	83, 196, 303
EarI	CTCTTC	3 cut(s)	83, 196, 303
Eco130I	CCWWGG	1 cut(s)	650
Eco24I	GRGCYC	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	749
Eco91I	GGTNACC	1 cut(s)	641
EcoO65I	GGTNACC	1 cut(s)	641
EcoT14I	CCWWGG	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	232
EgeI	GGCGCC	1 cut(s)	321
EheI	GGCGCC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	650
FaeI	CATG	3 cut(s)	57, 654, 790
FaiI	YATR	7 cut(s)	55, 205, 488, 627, 636, 652, 788
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	3 cut(s)	53, 650, 786
Fnu4HI	GCNGC	3 cut(s)	280, 332, 573
FokI	GGATG	3 cut(s)	98, 824, 839
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	280, 332, 573
GlaI	GCGC	5 cut(s)	58, 321, 592, 714, 872
GluI	GCNGC	3 cut(s)	280, 332, 573
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	435
HaeII	RGCGCY	2 cut(s)	323, 874
HaeIII	GGCC	4 cut(s)	212, 230, 344, 773
HapII	CCGG	3 cut(s)	172, 323, 335
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	5 cut(s)	59, 322, 593, 715, 873
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	57, 654, 790
Hin6I	GCGC	5 cut(s)	57, 320, 591, 713, 871
HinP1I	GCGC	5 cut(s)	57, 320, 591, 713, 871
HincII	GTYRAC	2 cut(s)	379, 565
HindII	GTYRAC	2 cut(s)	379, 565
HinfI	GANTC	6 cut(s)	50, 471, 552, 617, 630, 779
HpaII	CCGG	3 cut(s)	172, 323, 335
HphI	GGTGA	2 cut(s)	65, 680
Hpy166II	GTNNAC	4 cut(s)	379, 565, 671, 692
Hpy188I	TCNGA	3 cut(s)	223, 784, 842
Hpy188III	TCNNGA	5 cut(s)	28, 172, 424, 556, 809
Hpy8I	GTNNAC	4 cut(s)	379, 565, 671, 692
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	5 cut(s)	383, 496, 525, 562, 698
HpyCH4IV	ACGT	2 cut(s)	207, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	328, 512, 604, 803
HpyF3I	CTNAG	4 cut(s)	196, 270, 396, 432
HpySE526I	ACGT	2 cut(s)	207, 748
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	57, 654, 790
HspAI	GCGC	5 cut(s)	57, 320, 591, 713, 871
KasI	GGCGCC	1 cut(s)	319
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	743
LmnI	GCTCC	5 cut(s)	147, 169, 174, 266, 580
Lsp1109I	GCAGC	1 cut(s)	559
LweI	GCATC	2 cut(s)	700, 784
MaeII	ACGT	2 cut(s)	207, 748
MaeIII	GTNAC	3 cut(s)	481, 641, 763
MalI	GATC	1 cut(s)	745
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	1 cut(s)	743
MboII	GAAGA	6 cut(s)	70, 183, 320, 512, 561, 612
MhlI	GDGCHC	3 cut(s)	232, 494, 808
MlsI	TGGCCA	1 cut(s)	773
MluCI	AATT	1 cut(s)	361
MluNI	TGGCCA	1 cut(s)	773
Mly113I	GGCGCC	1 cut(s)	320
MlyI	GAGTC	2 cut(s)	44, 546
Mox20I	TGGCCA	1 cut(s)	773
MroI	TCCGGA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	773
Msp20I	TGGCCA	1 cut(s)	773
MspA1I	CMGCKG	1 cut(s)	400
MspI	CCGG	3 cut(s)	172, 323, 335
MvnI	CGCG	3 cut(s)	591, 607, 715
MwoI	GCNNNNNNNGC	4 cut(s)	328, 512, 604, 803
NarI	GGCGCC	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	650
NdeII	GATC	1 cut(s)	743
NlaIII	CATG	3 cut(s)	57, 654, 790
NlaIV	GGNNCC	2 cut(s)	230, 321
NmuCI	GTSAC	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	1 cut(s)	595
PfeI	GAWTC	4 cut(s)	471, 617, 630, 779
PkrI	GCNGC	3 cut(s)	281, 333, 574
PleI	GAGTC	2 cut(s)	44, 546
PluTI	GGCGCC	1 cut(s)	323
PmaCI	CACGTG	1 cut(s)	749
PmlI	CACGTG	1 cut(s)	749
PpsI	GAGTC	2 cut(s)	44, 546
Ppu21I	YACGTR	2 cut(s)	208, 749
PspCI	CACGTG	1 cut(s)	749
PspEI	GGTNACC	1 cut(s)	641
PspFI	CCCAGC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	230, 321
PspOMI	GGGCCC	1 cut(s)	228
PspPI	GGNCC	3 cut(s)	211, 228, 229
PvuII	CAGCTG	1 cut(s)	400
SatI	GCNGC	3 cut(s)	280, 332, 573
Sau3AI	GATC	1 cut(s)	743
Sau96I	GGNCC	3 cut(s)	211, 228, 229
SchI	GAGTC	2 cut(s)	44, 546
SduI	GDGCHC	3 cut(s)	232, 494, 808
SfaNI	GCATC	2 cut(s)	700, 784
SfoI	GGCGCC	1 cut(s)	321
Sse9I	AATT	1 cut(s)	361
SsiI	CCGC	4 cut(s)	135, 279, 332, 605
SspDI	GGCGCC	1 cut(s)	319
StyI	CCWWGG	1 cut(s)	650
TaaI	ACNGT	5 cut(s)	383, 496, 525, 562, 698
TaiI	ACGT	2 cut(s)	210, 751
TaqI	TCGA	1 cut(s)	423
TasI	AATT	1 cut(s)	361
TauI	GCSGC	2 cut(s)	282, 334
TfiI	GAWTC	4 cut(s)	471, 617, 630, 779
TscAI	CASTG	4 cut(s)	388, 460, 499, 781
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	1 cut(s)	803
TspRI	CASTG	4 cut(s)	388, 460, 499, 781
XapI	RAATTY	1 cut(s)	361
XcmI	CCANNNNNNNNNTGG	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.