Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Forward (+)

86519688 .. 86521938

Gene Structure 2251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54078

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCGATAGTATCGAAACGTTTTACTTTTTTACAGCTTTGTTTTCTTCAAAAATTGAAAATATCTCCAACAATCCTACCTGCAATTCTTTGGACCATCTTTGCCTCTCATGTAAACCCAAACAGCCTAAACCAACTCTTCTCTCATTCCTTATCCTCTCTCCCTCTTCTTCCCATCTCTCTCTTTCCCTCTCTACTTCTCTCTGCAACCATGTCTTCTGCAACCACTGGGTTTCTGAAGCCACTATCAATAGCTGAAACTTGTCTGGCCTCTGTTTCAACCACCAAAACCCAACACCCATTTCTTTCATTTCCCTCAAAACCCACCAAGCTCTCAACTCTCTCGTGCTCATTTTATTCATGGGTTTCTCTCAAGCACAAGTCTTTGCCTCTCCATGTGGCTCAGACCTCGGACTGGGCACAACAAGAGGTTGCAGAAGAAGTTAAAGACGGGGAGGTCTTGGAAACAGAGGAGGTGCCATTAGAGCCAAGTGCAATGTCTGAAGAAGCAGAAGAGAGCTCTGATGTTGGTGGAGTAGAAGAGTTCTATCCCGAGCCGCCGGAAGAGGCCAAGCTCTATGTGGGTAATTTGCCTTATGATGTTGACAGTGAGACGCTGGCTAACACCTTCAATGAGGCTGGAGTTGTTGAGATTGCTGAGGTGATTTACAATAGGGAAACAGACCAGAGCAGAGGGTTTGGGTTTGTGACTATGAGTACTGTTGAAGAAGCTGAGAAGGCTGTGGAGATGTTCAACCGATATGATTTAGGTGGAAGGTCTTTGACTGTAAACAAGGCTGCTCCTAGAGGGTCACGCCCCGAAAGACCACCTAGAGTGAATGAACCGTCTTTCAGAATCTATATTGGTAACCTGCCATGGCAAGTGGACGATTCTCGTTTGGAGCAGGTGTTCAGTGAACATGGGAATGTGGTCAGTGCGAGGGTGGTTTATGACAGGGAAACTGGCCGTTCACGCGGGTTTGGTTTCGTCACATTGTCCACTGAGACTGAAGTGGAGGATGCCATTGCGGCTCTTGATGGACAGAGTTTGGATGGTAGAACAATCCGAGTAAACGTTGCTGAAGAGCGACCAAGGCGTGGCTCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

369

Amino Acids

40.88

Weight (kDa)

4.89

Isoelectric Point (pI)

56.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	192 - 261	2.8e-19	RNA recognition motif
RRM_1	PF00076	286 - 356	2.4e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	895
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	3 cut(s)	88, 879, 895
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	1097
AccII	CGCG	1 cut(s)	975
AciI	CCGC	3 cut(s)	557, 975, 1028
AclI	AACGTT	2 cut(s)	19, 1074
AcoI	YGGCCR	1 cut(s)	964
AcuI	CTGAAG	4 cut(s)	257, 522, 1029, 1101
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	2 cut(s)	414, 1097
AgsI	TTSAA	6 cut(s)	50, 58, 279, 631, 725, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AloI	GAACNNNNNNTCC	2 cut(s)	893, 925
AluBI	AGCT	6 cut(s)	37, 254, 331, 519, 574, 731
AluI	AGCT	6 cut(s)	37, 254, 331, 519, 574, 731
Alw21I	GWGCWC	2 cut(s)	350, 521
Alw26I	GTCTC	2 cut(s)	605, 998
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	3 cut(s)	267, 567, 964
ApeKI	GCWGC	1 cut(s)	797
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	673
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	350, 521
BbvCI	CCTCAGC	1 cut(s)	657
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	4 cut(s)	104, 182, 1031, 1046
BceAI	ACGGC	1 cut(s)	951
BcoDI	GTCTC	2 cut(s)	605, 998
BfaI	CTAG	2 cut(s)	804, 831
BfuAI	ACCTGC	3 cut(s)	88, 879, 895
BglI	GCCNNNNNGGC	1 cut(s)	1028
BisI	GCNGC	3 cut(s)	557, 798, 1029
BlsI	GCNGC	3 cut(s)	558, 799, 1030
BmcAI	AGTACT	1 cut(s)	718
Bme18I	GGWCC	1 cut(s)	93
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	477
BmrI	ACTGGG	2 cut(s)	237, 424
BmsI	GCATC	1 cut(s)	1009
BmuI	ACTGGG	2 cut(s)	237, 424
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	657
BpuEI	CTTGAG	1 cut(s)	356
BsaJI	CCNNGG	3 cut(s)	408, 875, 1091
BsaXI	ACNNNNNCTCC	2 cut(s)	893, 923
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 1097
Bse1I	ACTGG	3 cut(s)	232, 419, 967
Bse3DI	GCAATG	2 cut(s)	501, 1023
BseDI	CCNNGG	3 cut(s)	408, 875, 1091
BseGI	GGATG	2 cut(s)	1024, 1057
BseLI	CCNNNNNNNGG	2 cut(s)	414, 1097
BseMI	GCAATG	2 cut(s)	501, 1023
BseMII	CTCAG	4 cut(s)	416, 648, 723, 993
BseNI	ACTGG	3 cut(s)	232, 419, 967
BseRI	GAGGAG	1 cut(s)	485
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	784
Bsh1236I	CGCG	1 cut(s)	975
BshFI	GGCC	3 cut(s)	269, 569, 966
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	350, 521
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	560
BslI	CCNNNNNNNGG	2 cut(s)	414, 1097
BsmAI	GTCTC	2 cut(s)	605, 998
BsmBI	CGTCTC	1 cut(s)	605
BsnI	GGCC	3 cut(s)	269, 569, 966
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	350, 421, 521
Bsp19I	CCATGG	1 cut(s)	875
BspACI	CCGC	3 cut(s)	557, 975, 1028
BspANI	GGCC	3 cut(s)	269, 569, 966
BspCNI	CTCAG	4 cut(s)	415, 649, 724, 994
BspFNI	CGCG	1 cut(s)	975
BspLI	GGNNCC	1 cut(s)	477
BspMI	ACCTGC	3 cut(s)	88, 879, 895
BspQI	GCTCTTC	1 cut(s)	1077
BspT107I	GGYRCC	1 cut(s)	475
BsrDI	GCAATG	2 cut(s)	501, 1023
BsrI	ACTGG	3 cut(s)	232, 419, 967
BssECI	CCNNGG	3 cut(s)	408, 875, 1091
BssSI	CACGAG	1 cut(s)	343
BssT1I	CCWWGG	2 cut(s)	875, 1091
Bst2BI	CACGAG	1 cut(s)	343
Bst4CI	ACNGT	4 cut(s)	608, 721, 787, 846
Bst6I	CTCTTC	6 cut(s)	143, 171, 507, 534, 558, 1077
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	4 cut(s)	402, 657, 732, 1002
BstDSI	CCRYGG	1 cut(s)	875
BstEII	GGTNACC	1 cut(s)	866
BstF5I	GGATG	2 cut(s)	1024, 1057
BstFNI	CGCG	1 cut(s)	975
BstMAI	GTCTC	2 cut(s)	605, 998
BstMWI	GCNNNNNNNGC	5 cut(s)	484, 737, 972, 1028, 1093
BstPI	GGTNACC	1 cut(s)	866
BstSLI	GKGCMC	1 cut(s)	421
BstUI	CGCG	1 cut(s)	975
BstV1I	GCAGC	1 cut(s)	784
BstV2I	GAAGAC	1 cut(s)	207
BsuRI	GGCC	3 cut(s)	269, 569, 966
BtgI	CCRYGG	1 cut(s)	875
BtsCI	GGATG	2 cut(s)	1024, 1057
BtsIMutI	CAGTG	5 cut(s)	225, 613, 919, 940, 999
BveI	ACCTGC	3 cut(s)	88, 879, 895
Cac8I	GCNNGC	1 cut(s)	618
Cfr13I	GGNCC	1 cut(s)	93
CseI	GACGC	1 cut(s)	622
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	6 cut(s)	110, 211, 360, 395, 876, 920
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	4 cut(s)	402, 657, 732, 1002
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	6 cut(s)	143, 171, 507, 534, 558, 1077
EarI	CTCTTC	6 cut(s)	143, 171, 507, 534, 558, 1077
Ecl136II	GAGCTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	875, 1091
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	4 cut(s)	257, 522, 1029, 1101
Eco88I	CYCGRG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	866
EcoICRI	GAGCTC	1 cut(s)	519
EcoO65I	GGTNACC	1 cut(s)	866
EcoT14I	CCWWGG	2 cut(s)	875, 1091
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	2 cut(s)	875, 1091
Esp3I	CGTCTC	1 cut(s)	605
FaeI	CATG	6 cut(s)	113, 214, 363, 398, 879, 923
FatI	CATG	6 cut(s)	109, 210, 359, 394, 875, 919
FauI	CCCGC	1 cut(s)	968
Fnu4HI	GCNGC	3 cut(s)	557, 798, 1029
FokI	GGATG	2 cut(s)	1031, 1064
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	3 cut(s)	557, 798, 1029
FspBI	CTAG	2 cut(s)	804, 831
GluI	GCNGC	3 cut(s)	557, 798, 1029
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	3 cut(s)	269, 569, 966
HapII	CCGG	1 cut(s)	560
HgaI	GACGC	1 cut(s)	622
Hin1II	CATG	6 cut(s)	113, 214, 363, 398, 879, 923
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HinfI	GANTC	2 cut(s)	855, 890
HpaII	CCGG	1 cut(s)	560
HphI	GGTGA	1 cut(s)	673
Hpy166II	GTNNAC	8 cut(s)	115, 604, 790, 886, 917, 971, 999, 1072
Hpy188I	TCNGA	7 cut(s)	237, 405, 412, 502, 523, 854, 1067
Hpy188III	TCNNGA	2 cut(s)	551, 1034
Hpy8I	GTNNAC	8 cut(s)	115, 604, 790, 886, 917, 971, 999, 1072
HpyAV	CCTTC	3 cut(s)	637, 730, 768
HpyCH4III	ACNGT	4 cut(s)	608, 721, 787, 846
HpyCH4IV	ACGT	2 cut(s)	19, 1074
HpyCH4V	TGCA	5 cut(s)	83, 206, 221, 434, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	484, 737, 972, 1028, 1093
HpyF3I	CTNAG	4 cut(s)	402, 657, 732, 1002
HpySE526I	ACGT	2 cut(s)	19, 1074
Hsp92II	CATG	6 cut(s)	113, 214, 363, 398, 879, 923
LguI	GCTCTTC	1 cut(s)	1077
LmnI	GCTCC	2 cut(s)	805, 901
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	1 cut(s)	1009
MaeI	CTAG	2 cut(s)	804, 831
MaeII	ACGT	2 cut(s)	19, 1074
MaeIII	GTNAC	4 cut(s)	706, 810, 866, 988
MhlI	GDGCHC	3 cut(s)	350, 421, 521
MluCI	AATT	3 cut(s)	53, 84, 586
MmeI	TCCRAC	1 cut(s)	92
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	924
MspI	CCGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	975
MwoI	GCNNNNNNNGC	5 cut(s)	484, 737, 972, 1028, 1093
NcoI	CCATGG	1 cut(s)	875
NlaIII	CATG	6 cut(s)	113, 214, 363, 398, 879, 923
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	3 cut(s)	706, 810, 988
PaqCI	CACCTGC	1 cut(s)	895
PciSI	GCTCTTC	1 cut(s)	1077
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	855, 890
PflMI	CCANNNNNTGG	1 cut(s)	1097
PkrI	GCNGC	3 cut(s)	558, 799, 1030
Psp124BI	GAGCTC	1 cut(s)	521
Psp1406I	AACGTT	2 cut(s)	19, 1074
PspEI	GGTNACC	1 cut(s)	866
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	93
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	924
SacI	GAGCTC	1 cut(s)	521
SapI	GCTCTTC	1 cut(s)	1077
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	3 cut(s)	557, 798, 1029
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	718
SduI	GDGCHC	3 cut(s)	350, 421, 521
SfaNI	GCATC	1 cut(s)	1009
SinI	GGWCC	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	924
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	3 cut(s)	53, 84, 586
SsiI	CCGC	3 cut(s)	557, 975, 1028
SspMI	CTAG	2 cut(s)	804, 831
SstI	GAGCTC	1 cut(s)	521
StyI	CCWWGG	2 cut(s)	875, 1091
TaaI	ACNGT	4 cut(s)	608, 721, 787, 846
TaiI	ACGT	2 cut(s)	22, 1077
TaqI	TCGA	2 cut(s)	5, 14
TasI	AATT	3 cut(s)	53, 84, 586
TatI	WGTACW	1 cut(s)	716
TauI	GCSGC	2 cut(s)	559, 1031
TfiI	GAWTC	2 cut(s)	855, 890
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	5 cut(s)	232, 613, 919, 940, 1006
TseFI	GTSAC	3 cut(s)	706, 810, 988
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	3 cut(s)	706, 810, 988
TspDTI	ATGAA	3 cut(s)	297, 348, 855
TspRI	CASTG	5 cut(s)	232, 613, 919, 940, 1006
Van91I	CCANNNNNTGG	1 cut(s)	1097
VpaK11BI	GGWCC	1 cut(s)	93
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XspI	CTAG	2 cut(s)	804, 831
ZrmI	AGTACT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.