Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003658

Physical Location & Seq

Genomic Coordinates Reverse (-)

1243094 .. 1245103

Gene Structure 2010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1020400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCTTCTGCAACCGCCACTCTTCTGAAGCCACTATCAAGCTCCGAAACCTGCCTCGCCGCGGTGCCACCCGCCCTATTCGCCCTCCAAAACCAATACCCAATTCTCTCACTCCCCTCAAAACCCACCAAGCTCTCACAAATCTCCTGCTCCTTCACTCCCTCACTCTCCTCGTTTCTCTCTCTAAAGCACAAGTCTTTGCCTCTCCTCCGCGTGGCTCAGACCTCCGACTGGGCTCAGGAGGAAGAATTGAAAGAAGAGGCCGAAAGCGCAGAGGAGGAGGGAGCAGAGGAGAGCTCCGGCGACGGAGTTTTGGCGGTCGGAGAAGAGGAATACTATCCCGAGCCGCCGGAGGAGGCCAAGCTCTTTGTGGGTAATTTGCCTTATGACGTTGACAGTGAAAAACTTGCTAATCTTTTCAATGATGCTGGAGTTGTTGAGATTGCTGAGGTGATTTACAACAGGGAAACTGATCAGAGCCGAGGATTTGGGTTTGTGACTATGAGCACTGTTGAAGAAGCTGAGAAGGCTGTGGAGATGTTCCACCGCTACGATATAGGTGGGAGGGCTTTGACTGTAAACAAGGCTGCTCCTAGAGGGTCACGCCCTGAAAGACCCATTCGAACGAATGAGCCTTCATTCAGAATCTATGTTGGTAATCTTCCGTGGCAAGTGGATGATTCTCGTTTGGAGCAGGTTTTCAGTGAACATGGAAACGTGGTCAGTGCCAGGGTAGTTTATGACCGGGAATCAGGGCGTTCACGTGGGTTTGGGTTCGTTACATTCTCTAGCGAGACAGAAGTGGACAATGCCATTGCTGCCCTTGATGGACAGAGTTTGGATGGCAGATCAATCCGAGTAAACGTTGCTGAAGAGCGACCAAGGCGTCGTTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05130 map05130

Pfam Domains

Protein Families

RRM_1

Protein Analysis

300

Amino Acids

32.97

Weight (kDa)

4.74

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	122 - 191	1.3e-19	RNA recognition motif
RRM_1	PF00076	216 - 286	1.2e-21	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50250
fragaria_vesca	FvH4_5g06660 FvH4_6g52070
malus_domestica	MD06G1162000.v1.1 MD09G1020400.v1.1 MD14G1167800.v1.1 MD17G1020900.v1.1
prunus_persica	Prupe.3G295800_v2.0.a1 Prupe.5G162300_v2.0.a1
pyrus_communis	pycom06g14480 pycom111g01710 pycom14g03200 pycom14g13990 pycom17g01760
rosa_chinensis	RchiOBHm_Chr2g0173571 RchiOBHm_Chr7g0192001
rosa_laevigata	RLG00000004410 RLG00000022203 RLG00000033717
rosa_multiflora	Rmu_sc0002538.1_g000022 Rmu_ssc0000421.1_g000032
rosa_roxburghii	Rroxscaffold_2G00078770 Rroxscaffold_3G00263370
rosa_rugosa	Rorug02G0571500 Rorug06G0512300
rosa_samantha	Rh2AG650300 Rh2BG660700 Rh2CG625600 Rh2DG676000 Rh7AG122600 Rh7BG124200 Rh7CG126900 Rh7DG125700
rosa_wichuraiana	Rw2G053370 Rw7G010440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	885
Acc36I	ACCTGC	2 cut(s)	59, 685
AccB1I	GGYRCC	1 cut(s)	64
AccII	CGCG	2 cut(s)	62, 213
AciI	CCGC	8 cut(s)	15, 60, 62, 72, 211, 317, 347, 547
AclI	AACGTT	1 cut(s)	864
AcuI	CTGAAG	2 cut(s)	47, 891
AcvI	CACGTG	1 cut(s)	764
AcyI	GRCGYC	1 cut(s)	886
AfiI	CCNNNNNNNGG	3 cut(s)	61, 214, 231
AgsI	TTSAA	3 cut(s)	253, 421, 515
AjnI	CCWGG	1 cut(s)	728
AjuI	GAANNNNNNNTTGG	3 cut(s)	87, 119, 874
AluBI	AGCT	5 cut(s)	42, 133, 297, 364, 521
AluI	AGCT	5 cut(s)	42, 133, 297, 364, 521
Alw21I	GWGCWC	2 cut(s)	299, 509
Alw26I	GTCTC	1 cut(s)	788
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	261, 357
ApeKI	GCWGC	2 cut(s)	587, 818
AspLEI	GCGC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	1 cut(s)	463
AsuII	TTCGAA	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	64
BanII	GRGCYC	2 cut(s)	238, 299
BbrPI	CACGTG	1 cut(s)	764
Bbv12I	GWGCWC	2 cut(s)	299, 509
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	574, 805
BccI	CCATC	2 cut(s)	821, 836
BciT130I	CCWGG	1 cut(s)	730
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	1 cut(s)	788
BfaI	CTAG	2 cut(s)	594, 789
BfuAI	ACCTGC	2 cut(s)	59, 685
BisI	GCNGC	4 cut(s)	60, 347, 588, 819
BlsI	GCNGC	4 cut(s)	61, 348, 589, 820
Bme1390I	CCNGG	2 cut(s)	730, 746
BmeT110I	CYCGRG	1 cut(s)	341
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	730, 746
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BpmI	CTGGAG	1 cut(s)	450
Bpu10I	CCTNAGC	2 cut(s)	237, 447
Bpu14I	TTCGAA	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	764
BsaHI	GRCGYC	1 cut(s)	886
BsaJI	CCNNGG	5 cut(s)	60, 481, 665, 729, 881
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 214, 231
Bse1I	ACTGG	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	813
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	5 cut(s)	60, 481, 665, 729, 881
BseGI	GGATG	2 cut(s)	682, 847
BseLI	CCNNNNNNNGG	3 cut(s)	61, 214, 231
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	4 cut(s)	233, 251, 438, 513
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	6 cut(s)	160, 197, 290, 293, 305, 368
BseXI	GCAGC	2 cut(s)	574, 805
Bsh1236I	CGCG	2 cut(s)	62, 213
Bsh1285I	CGRYCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	263, 359
BshNI	GGYRCC	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	299, 509
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	3 cut(s)	300, 350, 745
BslI	CCNNNNNNNGG	3 cut(s)	61, 214, 231
BsmAI	GTCTC	1 cut(s)	788
BsnI	GGCC	2 cut(s)	263, 359
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	622
Bsp1286I	GDGCHC	3 cut(s)	238, 299, 509
Bsp143I	GATC	2 cut(s)	472, 848
BspACI	CCGC	8 cut(s)	15, 60, 62, 72, 211, 317, 347, 547
BspANI	GGCC	2 cut(s)	263, 359
BspCNI	CTCAG	4 cut(s)	232, 250, 439, 514
BspFNI	CGCG	2 cut(s)	62, 213
BspLI	GGNNCC	1 cut(s)	66
BspMI	ACCTGC	2 cut(s)	59, 685
BspQI	GCTCTTC	1 cut(s)	867
BspT104I	TTCGAA	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	5 cut(s)	60, 481, 665, 729, 881
BssMI	GATC	2 cut(s)	472, 848
BssNI	GRCGYC	1 cut(s)	886
BssT1I	CCWWGG	1 cut(s)	881
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	3 cut(s)	398, 511, 577
Bst6I	CTCTTC	4 cut(s)	27, 252, 321, 867
BstACI	GRCGYC	1 cut(s)	886
BstBAI	YACGTR	1 cut(s)	764
BstBI	TTCGAA	1 cut(s)	622
BstDEI	CTNAG	4 cut(s)	219, 237, 447, 522
BstDSI	CCRYGG	2 cut(s)	60, 665
BstF5I	GGATG	2 cut(s)	682, 847
BstFNI	CGCG	2 cut(s)	62, 213
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	475, 851
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	2 cut(s)	472, 848
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 269, 527, 818, 883
BstNI	CCWGG	1 cut(s)	730
BstSCI	CCNGG	2 cut(s)	728, 744
BstUI	CGCG	2 cut(s)	62, 213
BstV1I	GCAGC	2 cut(s)	574, 805
BsuRI	GGCC	2 cut(s)	263, 359
BtgI	CCRYGG	2 cut(s)	60, 665
BtsCI	GGATG	2 cut(s)	682, 847
BtsIMutI	CAGTG	4 cut(s)	403, 507, 709, 730
BveI	ACCTGC	2 cut(s)	59, 685
CfoI	GCGC	1 cut(s)	272
Cfr42I	CCGCGG	1 cut(s)	63
CseI	GACGC	1 cut(s)	875
CviAII	CATG	1 cut(s)	710
DdeI	CTNAG	4 cut(s)	219, 237, 447, 522
DpnI	GATC	2 cut(s)	474, 850
DpnII	GATC	2 cut(s)	472, 848
DrdI	GACNNNNNNGTC	1 cut(s)	885
DseDI	GACNNNNNNGTC	1 cut(s)	885
Eam1104I	CTCTTC	4 cut(s)	27, 252, 321, 867
EarI	CTCTTC	4 cut(s)	27, 252, 321, 867
Ecl136II	GAGCTC	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	881
Eco24I	GRGCYC	2 cut(s)	238, 299
Eco53kI	GAGCTC	1 cut(s)	297
Eco57I	CTGAAG	2 cut(s)	47, 891
Eco72I	CACGTG	1 cut(s)	764
Eco88I	CYCGRG	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	881
EcoT38I	GRGCYC	2 cut(s)	238, 299
ErhI	CCWWGG	1 cut(s)	881
FaeI	CATG	1 cut(s)	713
FaiI	YATR	6 cut(s)	387, 503, 557, 651, 711, 741
FatI	CATG	1 cut(s)	709
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	60, 347, 588, 819
FokI	GGATG	2 cut(s)	689, 854
FriOI	GRGCYC	2 cut(s)	238, 299
Fsp4HI	GCNGC	4 cut(s)	60, 347, 588, 819
FspBI	CTAG	2 cut(s)	594, 789
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	4 cut(s)	60, 347, 588, 819
GsuI	CTGGAG	1 cut(s)	450
HaeIII	GGCC	2 cut(s)	263, 359
HapII	CCGG	3 cut(s)	300, 350, 745
HgaI	GACGC	1 cut(s)	875
HhaI	GCGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	886
Hin1II	CATG	1 cut(s)	713
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	3 cut(s)	645, 680, 749
HpaII	CCGG	3 cut(s)	300, 350, 745
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	6 cut(s)	394, 580, 707, 761, 805, 862
Hpy188I	TCNGA	8 cut(s)	27, 46, 222, 229, 323, 477, 644, 857
Hpy188III	TCNNGA	2 cut(s)	239, 341
Hpy8I	GTNNAC	6 cut(s)	394, 580, 707, 761, 805, 862
Hpy99I	CGWCG	2 cut(s)	308, 891
HpyAV	CCTTC	3 cut(s)	163, 520, 645
HpyCH4III	ACNGT	3 cut(s)	398, 511, 577
HpyCH4IV	ACGT	4 cut(s)	390, 717, 763, 864
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 269, 527, 818, 883
HpyF3I	CTNAG	4 cut(s)	219, 237, 447, 522
HpySE526I	ACGT	4 cut(s)	390, 717, 763, 864
Hsp92I	GRCGYC	1 cut(s)	886
Hsp92II	CATG	1 cut(s)	713
HspAI	GCGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	472
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	472, 848
LguI	GCTCTTC	1 cut(s)	867
LmnI	GCTCC	6 cut(s)	47, 155, 284, 302, 595, 691
Lsp1109I	GCAGC	2 cut(s)	574, 805
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	594, 789
MaeII	ACGT	4 cut(s)	390, 717, 763, 864
MaeIII	GTNAC	3 cut(s)	496, 600, 778
MalI	GATC	2 cut(s)	474, 850
MboI	GATC	2 cut(s)	472, 848
MboII	GAAGA	7 cut(s)	14, 257, 269, 338, 527, 653, 884
MhlI	GDGCHC	3 cut(s)	238, 299, 509
MluCI	AATT	3 cut(s)	102, 248, 376
MmeI	TCCRAC	2 cut(s)	252, 301
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	300, 350, 745
MspR9I	CCNGG	2 cut(s)	730, 746
MvaI	CCWGG	1 cut(s)	730
MvnI	CGCG	2 cut(s)	62, 213
MwoI	GCNNNNNNNGC	5 cut(s)	80, 269, 527, 818, 883
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	2 cut(s)	472, 848
NlaIII	CATG	1 cut(s)	713
NlaIV	GGNNCC	1 cut(s)	66
NmeAIII	GCCGAG	1 cut(s)	506
NmuCI	GTSAC	2 cut(s)	496, 600
NspV	TTCGAA	1 cut(s)	622
PciSI	GCTCTTC	1 cut(s)	867
PfeI	GAWTC	3 cut(s)	645, 680, 749
PkrI	GCNGC	4 cut(s)	61, 348, 589, 820
PmaCI	CACGTG	1 cut(s)	764
PmlI	CACGTG	1 cut(s)	764
Ppu21I	YACGTR	1 cut(s)	764
Psp124BI	GAGCTC	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	728
PspCI	CACGTG	1 cut(s)	764
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	299
SacII	CCGCGG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	867
SatI	GCNGC	4 cut(s)	60, 347, 588, 819
Sau3AI	GATC	2 cut(s)	472, 848
ScrFI	CCNGG	2 cut(s)	730, 746
SduI	GDGCHC	3 cut(s)	238, 299, 509
SfaNI	GCATC	1 cut(s)	415
Sfr303I	CCGCGG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	622
SgrBI	CCGCGG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	102, 248, 376
SsiI	CCGC	8 cut(s)	15, 60, 62, 72, 211, 317, 347, 547
SspMI	CTAG	2 cut(s)	594, 789
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	728, 744
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	3 cut(s)	398, 511, 577
TaiI	ACGT	4 cut(s)	393, 720, 766, 867
TaqI	TCGA	1 cut(s)	622
TasI	AATT	3 cut(s)	102, 248, 376
TauI	GCSGC	2 cut(s)	62, 349
TfiI	GAWTC	3 cut(s)	645, 680, 749
TscAI	CASTG	4 cut(s)	403, 514, 709, 730
TseFI	GTSAC	2 cut(s)	496, 600
TseI	GCWGC	2 cut(s)	587, 818
Tsp45I	GTSAC	2 cut(s)	496, 600
TspDTI	ATGAA	2 cut(s)	627, 882
TspGWI	ACGGA	2 cut(s)	321, 654
TspRI	CASTG	4 cut(s)	403, 514, 709, 730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	2 cut(s)	594, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.