AT5G51400

Cell number regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007068
Physical Location & Seq
Reverse (-)
20878491 .. 20880184
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51400.1

Sequence Viewer

Length: 726 bp
ATGATGTCGGACGGAGGAGCACCGTCGAGATACGTGAAGTTGACGAAGGAACAAGCTCCGGTCGATGAGATTCATCCCGGTGAACTCAATCAGCCCATTGAAGTTTCTCATCTAGCTGTTCACAAATGCAATGAGTGTGGCCAACCTTTGCCTGAGAATTTTGAAGCTCCTGCTGATGAGCCCTGGACTACCGGAATATTCGGCTGCACTGAGGACATGAATAGTTTTTGGCTGGGACTTTTCTGCCCAAGTGTTCTATTTGGACGTGTCTATGAAACTCTGAGTGATGAGGAAACCTCGTGGAAGAAAGCATGTATTTGCCATTCCATTGTAGTAGAAGGCGGTCTTACTGCTGCATCGATGCTTGCTTGTGTTCCCGGTATTGATCCGCATACTTCTTTACTTATATGGGAAGGTTTGTTGTTTGTTTGGTGGATGTGTGGGATATACACTGGAAATGTCCGTCAAACTCTACAAAGGAAATATCATCTTCAGAATGCTCCATGTGATCCATGTATGGTGCATTGTTGCCTTCACTTTTGTGCGGTTTGTCAAGAGCACCGTGAGATGAAGAATCGTCTTTCGGATAACTTTGTGATGCCTATGACTGTTATCAACCCACCACCGGTTCAAGAGATGAGTGCTTCTGGTGACAGAGACCAACACCACCACAACTCTGTTCCGGTTTCACACCATAGCTCTGATCTTGAGATGAGGCCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

241

Amino Acids

27.02

Weight (kDa)

5.34

Isoelectric Point (pI)

49.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 189 5.3e-24 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 342, 389, 545
AclWI GGATC 2 cut(s) 380, 503
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 625
AflIII ACRYGT 1 cut(s) 265
AgeI ACCGGT 1 cut(s) 625
AgsI TTSAA 3 cut(s) 101, 164, 632
AjiI CACGTC 1 cut(s) 266
AjnI CCWGG 1 cut(s) 182
AleI CACNNNNGTG 1 cut(s) 540
AluBI AGCT 4 cut(s) 56, 116, 167, 699
AluI AGCT 4 cut(s) 56, 116, 167, 699
Alw21I GWGCWC 2 cut(s) 22, 561
Alw26I GTCTC 1 cut(s) 651
AlwI GGATC 2 cut(s) 380, 503
AoxI GGCC 2 cut(s) 139, 716
ApeKI GCWGC 2 cut(s) 204, 353
ApoI RAATTY 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 625
AsuC2I CCSGG 2 cut(s) 78, 378
AsuHPI GGTGA 2 cut(s) 92, 662
BalI TGGCCA 1 cut(s) 141
BanII GRGCYC 1 cut(s) 183
BauI CACGAG 1 cut(s) 298
Bbv12I GWGCWC 2 cut(s) 22, 561
BbvI GCAGC 2 cut(s) 191, 340
BciT130I CCWGG 1 cut(s) 184
BcnI CCSGG 2 cut(s) 78, 378
BcoDI GTCTC 1 cut(s) 651
BfaI CTAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 205, 354
BlsI GCNGC 2 cut(s) 206, 355
Bme1390I CCNGG 3 cut(s) 78, 184, 378
BmgBI CACGTC 1 cut(s) 266
BmrFI CCNGG 3 cut(s) 78, 184, 378
BmsI GCATC 3 cut(s) 351, 365, 588
BplI GAGNNNNNCTC 2 cut(s) 281, 313
BpuMI CCSGG 2 cut(s) 78, 378
Bsa29I ATCGAT 1 cut(s) 359
BsaAI YACGTR 1 cut(s) 34
BsaI GGTCTC 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 182
BsaWI WCCGGW 4 cut(s) 58, 191, 625, 682
Bsc4I CCNNNNNNNGG 1 cut(s) 625
Bse118I RCCGGY 1 cut(s) 625
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 359
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 73, 441
BseLI CCNNNNNNNGG 1 cut(s) 625
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 3 cut(s) 144, 201, 272
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 2 cut(s) 191, 340
BseYI CCCAGC 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 141, 718
BshTI ACCGGT 1 cut(s) 625
BshVI ATCGAT 1 cut(s) 359
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 22, 561
BsiSI CCGG 6 cut(s) 59, 78, 192, 378, 626, 683
BslFI GGGAC 1 cut(s) 249
BslI CCNNNNNNNGG 1 cut(s) 625
BsmAI GTCTC 1 cut(s) 651
BsmFI GGGAC 1 cut(s) 249
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 2 cut(s) 141, 718
Bso31I GGTCTC 1 cut(s) 651
Bsp1286I GDGCHC 3 cut(s) 22, 183, 561
Bsp143I GATC 3 cut(s) 385, 508, 703
BspACI CCGC 3 cut(s) 342, 389, 545
BspANI GGCC 2 cut(s) 141, 718
BspCNI CTCAG 3 cut(s) 145, 202, 273
BspDI ATCGAT 1 cut(s) 359
BspPI GGATC 2 cut(s) 380, 503
BspTNI GGTCTC 1 cut(s) 651
BsrDI GCAATG 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 625
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 1 cut(s) 182
BssMI GATC 3 cut(s) 385, 508, 703
BssSI CACGAG 1 cut(s) 298
Bst2BI CACGAG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 184
Bst4CI ACNGT 3 cut(s) 24, 563, 610
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 3 cut(s) 153, 210, 281
BstF5I GGATG 2 cut(s) 73, 441
BstKTI GATC 3 cut(s) 388, 511, 706
BstMAI GTCTC 1 cut(s) 651
BstMBI GATC 3 cut(s) 385, 508, 703
BstMCI CGRYCG 1 cut(s) 63
BstNI CCWGG 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 315
BstSCI CCNGG 3 cut(s) 76, 182, 376
BstV1I GCAGC 2 cut(s) 191, 340
Bsu15I ATCGAT 1 cut(s) 359
BsuRI GGCC 2 cut(s) 141, 718
BsuTUI ATCGAT 1 cut(s) 359
BtrI CACGTC 1 cut(s) 266
BtsCI GGATG 2 cut(s) 73, 441
BtsIMutI CAGTG 2 cut(s) 207, 450
Cac8I GCNNGC 1 cut(s) 366
Cfr10I RCCGGY 1 cut(s) 625
ClaI ATCGAT 1 cut(s) 359
CspAI ACCGGT 1 cut(s) 625
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 217, 312, 504, 513
DdeI CTNAG 3 cut(s) 153, 210, 281
DpnI GATC 3 cut(s) 387, 510, 705
DpnII GATC 3 cut(s) 385, 508, 703
EaeI YGGCCR 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 651
Eco57I CTGAAG 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 182
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 4 cut(s) 220, 315, 507, 516
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 249
FatI CATG 4 cut(s) 216, 311, 503, 512
Fnu4HI GCNGC 2 cut(s) 205, 354
FokI GGATG 2 cut(s) 60, 448
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 2 cut(s) 205, 354
FspBI CTAG 1 cut(s) 113
GluI GCNGC 2 cut(s) 205, 354
GsaI CCCAGC 1 cut(s) 236
HaeIII GGCC 2 cut(s) 141, 718
HapII CCGG 6 cut(s) 59, 78, 192, 378, 626, 683
Hin1II CATG 4 cut(s) 220, 315, 507, 516
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 70, 574
HpaII CCGG 6 cut(s) 59, 78, 192, 378, 626, 683
HphI GGTGA 2 cut(s) 92, 662
Hpy166II GTNNAC 3 cut(s) 42, 83, 121
Hpy188I TCNGA 5 cut(s) 10, 282, 495, 586, 703
Hpy188III TCNNGA 4 cut(s) 27, 554, 632, 707
Hpy8I GTNNAC 3 cut(s) 42, 83, 121
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 4 cut(s) 40, 332, 407, 542
HpyCH4III ACNGT 3 cut(s) 24, 563, 610
HpyCH4IV ACGT 2 cut(s) 33, 265
HpyCH4V TGCA 4 cut(s) 129, 207, 356, 523
HpyF3I CTNAG 3 cut(s) 153, 210, 281
HpySE526I ACGT 2 cut(s) 33, 265
Hsp92II CATG 4 cut(s) 220, 315, 507, 516
Kzo9I GATC 3 cut(s) 385, 508, 703
LmnI GCTCC 4 cut(s) 17, 61, 172, 505
Lsp1109I GCAGC 2 cut(s) 191, 340
LweI GCATC 3 cut(s) 351, 365, 588
MaeI CTAG 1 cut(s) 113
MaeII ACGT 2 cut(s) 33, 265
MaeIII GTNAC 1 cut(s) 650
MalI GATC 3 cut(s) 387, 510, 705
MboI GATC 3 cut(s) 385, 508, 703
MboII GAAGA 3 cut(s) 316, 482, 583
MhlI GDGCHC 3 cut(s) 22, 183, 561
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 157
MluNI TGGCCA 1 cut(s) 141
MnlI CCTC 5 cut(s) 8, 205, 283, 307, 708
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MslI CAYNNNNRTG 2 cut(s) 78, 540
Msp20I TGGCCA 1 cut(s) 141
MspI CCGG 6 cut(s) 59, 78, 192, 378, 626, 683
MspR9I CCNGG 3 cut(s) 78, 184, 378
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 1 cut(s) 184
NciI CCSGG 2 cut(s) 78, 378
NdeII GATC 3 cut(s) 385, 508, 703
NlaIII CATG 4 cut(s) 220, 315, 507, 516
NmuCI GTSAC 1 cut(s) 650
NspI RCATGY 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 540
PctI GAATGC 1 cut(s) 502
PfeI GAWTC 2 cut(s) 70, 574
PinAI ACCGGT 1 cut(s) 625
PkrI GCNGC 2 cut(s) 206, 355
Ppu21I YACGTR 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 1 cut(s) 182
RseI CAYNNNNRTG 2 cut(s) 78, 540
SatI GCNGC 2 cut(s) 205, 354
Sau3AI GATC 3 cut(s) 385, 508, 703
ScrFI CCNGG 3 cut(s) 78, 184, 378
SduI GDGCHC 3 cut(s) 22, 183, 561
SetI ASST 9 cut(s) 36, 58, 118, 148, 169, 268, 299, 418, 701
SfaNI GCATC 3 cut(s) 351, 365, 588
SmiMI CAYNNNNRTG 2 cut(s) 78, 540
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
Sse9I AATT 1 cut(s) 157
SsiI CCGC 3 cut(s) 342, 389, 545
SspI AATATT 1 cut(s) 198
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 3 cut(s) 76, 182, 376
TaaI ACNGT 3 cut(s) 24, 563, 610
TaiI ACGT 2 cut(s) 36, 268
TaqI TCGA 3 cut(s) 26, 63, 359
TasI AATT 1 cut(s) 157
TfiI GAWTC 2 cut(s) 70, 574
TscAI CASTG 2 cut(s) 214, 457
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 2 cut(s) 204, 353
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 4 cut(s) 62, 233, 288, 584
TspGWI ACGGA 2 cut(s) 27, 452
TspRI CASTG 2 cut(s) 214, 457
XapI RAATTY 1 cut(s) 157
XceI RCATGY 1 cut(s) 315
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.