Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007068

Physical Location & Seq

Genomic Coordinates Reverse (-)

29461613 .. 29461885

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1303400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCGGACGGAACTGCGCACTCGCGGTATGTGAAGCTGACAAAGGATCAAGCGCCGGCCGAGGACATTAAGCCCGGCGAGCTCAATCAGCTCATCGAAGTTCCCCAGTTGAATGTTCACAGGTGTCATGAATGCGGACAGCCTTTACCCGAGAGCTATCAGCCCCCTGGAGATGAGCCTTGGACAACCGGAATTTTTGGCTGTGCTGAAGATAGAGAAAGTTGCTTGATAGGGTTATTTTTGTCCATGTGTTCTGTTTGGGCGCAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

91

Amino Acids

9.96

Weight (kDa)

4.66

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51400
fragaria_vesca	FvH4_7g27460
malus_domestica	MD01G1182500.v1.1 MD03G1114000.v1.1 MD07G1110500.v1.1 MD07G1253100.v1.1 MD07G1253200.v1.1 MD11G1237200.v1.1 MD13G1258300.v1.1 MD15G1303400.v1.1
prunus_persica	Prupe.2G276700_v2.0.a1
pyrus_communis	pycom01g19270 pycom07g22570
rosa_chinensis	RchiOBHm_Chr1g0374251
rosa_laevigata	RLG00000026749
rosa_multiflora	Rmu_ssc0000007.1_g000024 Rmu_ssc0000007.1_g000032
rosa_roxburghii	Rroxscaffold_4G00283620
rosa_rugosa	Rorug01G0382300
rosa_samantha	Rh1AG393000 Rh1BG357200 Rh1CG370200 Rh1DG387600
rosa_wichuraiana	Rw1G034050 Rw1G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
AccII	CGCG	1 cut(s)	25
AciI	CCGC	3 cut(s)	5, 25, 135
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	37, 82, 91, 156
AluI	AGCT	4 cut(s)	37, 82, 91, 156
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	192
AspLEI	GCGC	3 cut(s)	19, 55, 265
AsuC2I	CCSGG	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	75, 168
BmeT110I	CYCGRG	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	75, 168
BmrI	ACTGGG	1 cut(s)	100
BmuI	ACTGGG	1 cut(s)	100
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	60, 166, 179
BsaWI	WCCGGW	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	106
Bse3DI	GCAATG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	3 cut(s)	60, 166, 179
BseMI	GCAATG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	106
BseX3I	CGGCCG	1 cut(s)	57
Bsh1236I	CGCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	56, 75, 189
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	3 cut(s)	5, 25, 135
BspANI	GGCC	1 cut(s)	59
BspFNI	CGCG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	127
BspPI	GGATC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	272
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	60, 166, 179
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	57, 80
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	3 cut(s)	19, 55, 265
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 88
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	73, 166
BstUI	CGCG	1 cut(s)	25
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	57, 80
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	3 cut(s)	19, 55, 265
Cfr10I	RCCGGY	1 cut(s)	55
CviAII	CATG	2 cut(s)	128, 247
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	1 cut(s)	179
Eco24I	GRGCYC	1 cut(s)	84
Eco52I	CGGCCG	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	131, 250
FaiI	YATR	3 cut(s)	30, 129, 248
FatI	CATG	2 cut(s)	127, 246
FriOI	GRGCYC	1 cut(s)	84
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	3 cut(s)	18, 54, 264
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	3 cut(s)	56, 75, 189
HhaI	GCGC	3 cut(s)	19, 55, 265
Hin1II	CATG	2 cut(s)	131, 250
Hin6I	GCGC	3 cut(s)	17, 53, 263
HinP1I	GCGC	3 cut(s)	17, 53, 263
HpaII	CCGG	3 cut(s)	56, 75, 189
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	1 cut(s)	118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 88
Hsp92II	CATG	2 cut(s)	131, 250
HspAI	GCGC	3 cut(s)	17, 53, 263
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	69, 88, 106, 119, 153, 180, 202
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	84
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	1 cut(s)	69
MspI	CCGG	3 cut(s)	56, 75, 189
MspR9I	CCNGG	2 cut(s)	75, 168
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	79, 88
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	1 cut(s)	46
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	131, 250
NmeAIII	GCCGAG	1 cut(s)	85
NsbI	TGCGCA	1 cut(s)	18
PagI	TCATGA	1 cut(s)	127
PctI	GAATGC	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	75, 168
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	5 cut(s)	39, 84, 93, 125, 158
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	5, 25, 135
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	73, 166
StyI	CCWWGG	1 cut(s)	179
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	192
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	144
TspGWI	ACGGA	1 cut(s)	24
XapI	RAATTY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.