Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007068

Physical Location & Seq

Genomic Coordinates Reverse (-)

23850944 .. 23852902

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22570.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGGACGGAACTGCGCAGTCGCGGTATGTGAAACTGACGAAGGATCAAGCGCCGGCCGAGGACATAAAGCCCGGCGAGCTCAATCAGCCCATCGAAGTTCCTCAGTTGAATGTTCACAGGTGTCATGAATGCGGACAGCCTTTACCTGAGAGCTATCAGCCCCCTGGAGATGAGCCTTGGACAACCGGAATTTTTGGCTGTGCTGAAGATAGAGAAAGTTGCTTGACAGGGTTATTTTGTCCTTGTGTTCTGTTTGGGCGCAATGTTGAGAGCCTAAGAGACGATACCCCTTGGAACAGACCATGCATTTGTCATGCCGTTTGTATTGAAGGTGGTATGGCTCTGGCAGCATTAACTGCAATCTTCCATGGCGTTGACCCAAGGACTTCATTTCTTATTTGCGAGGGTCTGTTATTTTCTTGGTGGATGTGTGGGGTATATACCGGTCTTGTCCGGCAATCCTTGCAGAAGAAGTATCATCTACAGAACTCACCGTGTGACCCATGCTTGACACACTGCTGCTTGCACTGGTGCGCCTTGTGCCAAGAGCACAGGGAGATGAAGGGACGCCTCTCGGACAATGCTGTGATGCCAATGACCGTCGTCAACCCACCCCAAGTTCAACAGATGAAGTCTGCTGAAGACAACCAGGACTCCGCTTCACCATCCTCTACCAACAACAATGGCCGCACAGATATGGAGATGCAGGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

240

Amino Acids

26.56

Weight (kDa)

5.2

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51400
fragaria_vesca	FvH4_7g27460
malus_domestica	MD01G1182500.v1.1 MD03G1114000.v1.1 MD07G1110500.v1.1 MD07G1253100.v1.1 MD07G1253200.v1.1 MD11G1237200.v1.1 MD13G1258300.v1.1 MD15G1303400.v1.1
prunus_persica	Prupe.2G276700_v2.0.a1
pyrus_communis	pycom01g19270 pycom07g22570
rosa_chinensis	RchiOBHm_Chr1g0374251
rosa_laevigata	RLG00000026749
rosa_multiflora	Rmu_ssc0000007.1_g000024 Rmu_ssc0000007.1_g000032
rosa_roxburghii	Rroxscaffold_4G00283620
rosa_rugosa	Rorug01G0382300
rosa_samantha	Rh1AG393000 Rh1BG357200 Rh1CG370200 Rh1DG387600
rosa_wichuraiana	Rw1G034050 Rw1G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
AccII	CGCG	1 cut(s)	25
AciI	CCGC	5 cut(s)	5, 25, 135, 660, 691
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	2 cut(s)	57, 688
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	2 cut(s)	228, 663
AcyI	GRCGYC	1 cut(s)	571
AdeI	CACNNNGTG	1 cut(s)	500
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	112, 332, 626
AjnI	CCWGG	2 cut(s)	166, 651
AluBI	AGCT	2 cut(s)	82, 156
AluI	AGCT	2 cut(s)	82, 156
Alw21I	GWGCWC	2 cut(s)	84, 555
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	2 cut(s)	57, 688
ApeKI	GCWGC	2 cut(s)	350, 522
ApoI	RAATTY	1 cut(s)	192
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AsiGI	ACCGGT	1 cut(s)	446
AspLEI	GCGC	4 cut(s)	19, 55, 264, 539
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	486, 657
BanII	GRGCYC	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	2 cut(s)	84, 555
BbvI	GCAGC	2 cut(s)	362, 509
BccI	CCATC	2 cut(s)	101, 676
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	2 cut(s)	168, 653
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	3 cut(s)	351, 523, 691
BlsI	GCNGC	3 cut(s)	352, 524, 692
Bme1390I	CCNGG	3 cut(s)	75, 168, 653
BmrFI	CCNGG	3 cut(s)	75, 168, 653
BmsI	GCATC	2 cut(s)	582, 696
BoxI	GACNNNNGTC	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	571
BsaJI	CCNNGG	6 cut(s)	60, 166, 179, 293, 370, 383
BsaWI	WCCGGW	2 cut(s)	188, 446
BsaXI	ACNNNNNCTCC	2 cut(s)	641, 671
Bse118I	RCCGGY	2 cut(s)	55, 446
Bse1I	ACTGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	2 cut(s)	168, 653
BseDI	CCNNGG	6 cut(s)	60, 166, 179, 293, 370, 383
BseGI	GGATG	2 cut(s)	435, 668
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	119, 141
BseNI	ACTGG	1 cut(s)	536
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	2 cut(s)	362, 509
Bsh1236I	CGCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	59, 690
BshTI	ACCGGT	1 cut(s)	446
BsiEI	CGRYCG	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	84, 555
BsiSI	CCGG	5 cut(s)	56, 75, 189, 447, 457
BslFI	GGGAC	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	59, 690
Bsp1286I	GDGCHC	2 cut(s)	84, 555
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	5 cut(s)	5, 25, 135, 660, 691
BspANI	GGCC	2 cut(s)	59, 690
BspCNI	CTCAG	2 cut(s)	118, 142
BspFNI	CGCG	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	127
BspPI	GGATC	1 cut(s)	54
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	2 cut(s)	55, 446
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	2 cut(s)	55, 446
BssECI	CCNNGG	6 cut(s)	60, 166, 179, 293, 370, 383
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	571
BssT1I	CCWWGG	4 cut(s)	179, 293, 370, 383
Bst2UI	CCWGG	2 cut(s)	168, 653
Bst4CI	ACNGT	2 cut(s)	498, 604
BstACI	GRCGYC	1 cut(s)	571
BstAPI	GCANNNNNTGC	2 cut(s)	359, 466
BstC8I	GCNNGC	4 cut(s)	57, 80, 527, 711
BstDEI	CTNAG	3 cut(s)	105, 150, 278
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	2 cut(s)	435, 668
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	4 cut(s)	19, 55, 264, 539
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	6 cut(s)	79, 88, 350, 359, 466, 543
BstNI	CCWGG	2 cut(s)	168, 653
BstPAI	GACNNNNGTC	1 cut(s)	605
BstSCI	CCNGG	3 cut(s)	73, 166, 651
BstSFI	CTRYAG	1 cut(s)	485
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	2 cut(s)	362, 509
BstV2I	GAAGAC	1 cut(s)	651
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	59, 690
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	435, 668
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	517, 529
Cac8I	GCNNGC	4 cut(s)	57, 80, 527, 711
CciI	TCATGA	1 cut(s)	127
CfoI	GCGC	4 cut(s)	19, 55, 264, 539
Cfr10I	RCCGGY	2 cut(s)	55, 446
CseI	GACGC	1 cut(s)	579
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	5 cut(s)	128, 306, 317, 371, 507
DdeI	CTNAG	3 cut(s)	105, 150, 278
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
DraIII	CACNNNGTG	1 cut(s)	500
EaeI	YGGCCR	2 cut(s)	57, 688
EagI	CGGCCG	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	82
EclXI	CGGCCG	1 cut(s)	57
Eco130I	CCWWGG	4 cut(s)	179, 293, 370, 383
Eco24I	GRGCYC	1 cut(s)	84
Eco52I	CGGCCG	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	228, 663
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	166, 651
EcoT14I	CCWWGG	4 cut(s)	179, 293, 370, 383
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	4 cut(s)	179, 293, 370, 383
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	5 cut(s)	131, 309, 320, 374, 510
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	5 cut(s)	127, 305, 316, 370, 506
Fnu4HI	GCNGC	3 cut(s)	351, 523, 691
FokI	GGATG	2 cut(s)	442, 655
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	351, 523, 691
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	4 cut(s)	18, 54, 263, 538
GluI	GCNGC	3 cut(s)	351, 523, 691
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	59, 690
HapII	CCGG	5 cut(s)	56, 75, 189, 447, 457
HgaI	GACGC	1 cut(s)	579
HhaI	GCGC	4 cut(s)	19, 55, 264, 539
Hin1I	GRCGYC	1 cut(s)	571
Hin1II	CATG	5 cut(s)	131, 309, 320, 374, 510
Hin6I	GCGC	4 cut(s)	17, 53, 262, 537
HinP1I	GCGC	4 cut(s)	17, 53, 262, 537
HincII	GTYRAC	2 cut(s)	379, 610
HindII	GTYRAC	2 cut(s)	379, 610
HinfI	GANTC	1 cut(s)	656
HpaII	CCGG	5 cut(s)	56, 75, 189, 447, 457
HphI	GGTGA	2 cut(s)	486, 657
Hpy166II	GTNNAC	3 cut(s)	118, 379, 610
Hpy188I	TCNGA	1 cut(s)	580
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	3 cut(s)	118, 379, 610
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	3 cut(s)	37, 326, 559
HpyCH4III	ACNGT	2 cut(s)	498, 604
HpyCH4V	TGCA	5 cut(s)	309, 362, 469, 529, 709
HpyF10VI	GCNNNNNNNGC	6 cut(s)	79, 88, 350, 359, 466, 543
HpyF3I	CTNAG	3 cut(s)	105, 150, 278
Hsp92I	GRCGYC	1 cut(s)	571
Hsp92II	CATG	5 cut(s)	131, 309, 320, 374, 510
HspAI	GCGC	4 cut(s)	17, 53, 262, 537
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	46
Lsp1109I	GCAGC	2 cut(s)	362, 509
LweI	GCATC	2 cut(s)	582, 696
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	4 cut(s)	221, 358, 484, 656
MhlI	GDGCHC	2 cut(s)	84, 555
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	650
MnlI	CCTC	5 cut(s)	55, 114, 400, 584, 682
Mph1103I	ATGCAT	1 cut(s)	311
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	698
MspI	CCGG	5 cut(s)	56, 75, 189, 447, 457
MspR9I	CCNGG	3 cut(s)	75, 168, 653
Mva1269I	GAATGC	1 cut(s)	137
MvaI	CCWGG	2 cut(s)	168, 653
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	6 cut(s)	79, 88, 350, 359, 466, 543
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	370
NdeII	GATC	1 cut(s)	46
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	5 cut(s)	131, 309, 320, 374, 510
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	500
NsbI	TGCGCA	1 cut(s)	18
NsiI	ATGCAT	1 cut(s)	311
PagI	TCATGA	1 cut(s)	127
PctI	GAATGC	1 cut(s)	137
PdiI	GCCGGC	1 cut(s)	57
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	352, 524, 692
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
PshAI	GACNNNNGTC	1 cut(s)	605
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	166, 651
PspGI	CCWGG	2 cut(s)	166, 651
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	356
SatI	GCNGC	3 cut(s)	351, 523, 691
Sau3AI	GATC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	3 cut(s)	75, 168, 653
SduI	GDGCHC	2 cut(s)	84, 555
SetI	ASST	5 cut(s)	84, 125, 151, 158, 337
SfaNI	GCATC	2 cut(s)	582, 696
SfcI	CTRYAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	1 cut(s)	698
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	5 cut(s)	5, 25, 135, 660, 691
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	73, 166, 651
StyI	CCWWGG	4 cut(s)	179, 293, 370, 383
TaaI	ACNGT	2 cut(s)	498, 604
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	693
Tru1I	TTAA	1 cut(s)	356
Tru9I	TTAA	1 cut(s)	356
TscAI	CASTG	2 cut(s)	524, 536
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	2 cut(s)	350, 522
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	4 cut(s)	144, 381, 578, 647
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	2 cut(s)	524, 536
XapI	RAATTY	1 cut(s)	192
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.