Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000007.1

Orthogroup ID

OG0007068

Physical Location & Seq

Genomic Coordinates Forward (+)

141180 .. 141657

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000007.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggctgttgcagcaggaactgcaatcttccatggtgttgacccaagaacttcatttcttatctgcgagggtctgttgtttgcatggtggatgtgtggagtgtatacaggtcttgttcggcaatccttgcagaaaaaatatcatcttaagaactcgccatgtgacccttgcttggtgcactgctgcctgcactggtgtgccttgtgtcaggagcacagggagatgaagggtcgcctttcagaaaattctgtgatgccaatgaccgttgtcaaccctcctcctgttcaacagatgaacaaacctgctgatgacaacaacaaccaggactctgctgcaccgtcctctactaccaacaatgggcatactaatatagaaatgcaggcattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

129

Amino Acids

14.3

Weight (kDa)

6.56

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51400
fragaria_vesca	FvH4_7g27460
malus_domestica	MD01G1182500.v1.1 MD03G1114000.v1.1 MD07G1110500.v1.1 MD07G1253100.v1.1 MD07G1253200.v1.1 MD11G1237200.v1.1 MD13G1258300.v1.1 MD15G1303400.v1.1
prunus_persica	Prupe.2G276700_v2.0.a1
pyrus_communis	pycom01g19270 pycom07g22570
rosa_chinensis	RchiOBHm_Chr1g0374251
rosa_laevigata	RLG00000026749
rosa_multiflora	Rmu_ssc0000007.1_g000024 Rmu_ssc0000007.1_g000032
rosa_roxburghii	Rroxscaffold_4G00283620
rosa_rugosa	Rorug01G0382300
rosa_samantha	Rh1AG393000 Rh1BG357200 Rh1CG370200 Rh1DG387600
rosa_wichuraiana	Rw1G034050 Rw1G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	310
AccI	GTMKAC	1 cut(s)	104
AcsI	RAATTY	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	172, 357
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	321
AleI	CACNNNNGTG	1 cut(s)	195
Alw21I	GWGCWC	2 cut(s)	180, 216
Alw44I	GTGCAC	1 cut(s)	176
AlwNI	CAGNNNCTG	1 cut(s)	20
ApaLI	GTGCAC	1 cut(s)	176
ApeKI	GCWGC	3 cut(s)	11, 183, 332
ApoI	RAATTY	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	180, 216
BbvI	GCAGC	3 cut(s)	23, 170, 319
BciT130I	CCWGG	1 cut(s)	323
BfrI	CTTAAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	3 cut(s)	12, 184, 333
BlsI	GCNGC	3 cut(s)	13, 185, 334
Bme1390I	CCNGG	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	243
BoxI	GACNNNNGTC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 357
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	1 cut(s)	323
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	172, 357
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	267
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	23, 170, 319
BsgI	GTGCAG	2 cut(s)	173, 318
BsiHKAI	GWGCWC	2 cut(s)	180, 216
BslI	CCNNNNNNNGG	2 cut(s)	172, 357
Bsp1286I	GDGCHC	2 cut(s)	180, 216
Bsp19I	CCATGG	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	310
BspTI	CTTAAG	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	31
BssNAI	GTATAC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	31
Bst1107I	GTATAC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	265, 339
BstAFI	CTTAAG	1 cut(s)	146
BstAPI	GCANNNNNTGC	2 cut(s)	20, 127
BstC8I	GCNNGC	2 cut(s)	188, 381
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 20, 127
BstNI	CCWGG	1 cut(s)	323
BstPAI	GACNNNNGTC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	3 cut(s)	23, 170, 319
BstZ17I	GTATAC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	178, 190
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	2 cut(s)	188, 381
CaiI	CAGNNNCTG	1 cut(s)	20
CviAII	CATG	3 cut(s)	32, 84, 159
CviJI	RGCY	1 cut(s)	5
CviKI_1	RGCY	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	3 cut(s)	35, 87, 162
FaiI	YATR	6 cut(s)	33, 85, 105, 160, 363, 371
FatI	CATG	3 cut(s)	31, 83, 158
FblI	GTMKAC	1 cut(s)	104
Fnu4HI	GCNGC	3 cut(s)	12, 184, 333
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	12, 184, 333
GluI	GCNGC	3 cut(s)	12, 184, 333
Hin1II	CATG	3 cut(s)	35, 87, 162
HincII	GTYRAC	2 cut(s)	40, 271
HindII	GTYRAC	2 cut(s)	40, 271
HinfI	GANTC	1 cut(s)	326
Hpy166II	GTNNAC	4 cut(s)	40, 105, 178, 271
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	4 cut(s)	40, 105, 178, 271
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	265, 339
HpyCH4V	TGCA	8 cut(s)	11, 23, 83, 130, 178, 190, 335, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 20, 127
Hsp92II	CATG	3 cut(s)	35, 87, 162
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	3 cut(s)	23, 170, 319
LweI	GCATC	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	161
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	180, 216
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	4 cut(s)	61, 285, 288, 352
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	195
MspCI	CTTAAG	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	323
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	3 cut(s)	11, 20, 127
NcoI	CCATGG	1 cut(s)	31
NlaIII	CATG	3 cut(s)	35, 87, 162
NmuCI	GTSAC	1 cut(s)	161
OliI	CACNNNNGTG	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	13, 185, 334
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	321
PstNI	CAGNNNCTG	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	12, 184, 333
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	180, 216
SetI	ASST	2 cut(s)	112, 304
SfaNI	GCATC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	244
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	265, 339
TasI	AATT	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	185, 197
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	3 cut(s)	11, 183, 332
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	3 cut(s)	42, 239, 308
TspRI	CASTG	2 cut(s)	185, 197
Vha464I	CTTAAG	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	176
XapI	RAATTY	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.