FvH4_7g27460

Cell number regulator 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007068
Physical Location & Seq
Reverse (-)
20509781 .. 20512518
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27460.t1

Sequence Viewer

Length: 732 bp
ATGGCGGACGGCGGCGGTCACTCGCGCTATGTGAAGCTGACGAAAGATCAGGCGCCGCTTCAGGAGGACATTACGCCCGGCGAGCTCAATCAGCCCATCGAAGTTCCTCAGTTGAATGTTCAGAAGTGTAATGAATGTGGACAGCCTTTGCCGGAGAGCTTTCAGCCGCCTGCCGATGAGCCTTGGACGACTGGGATTTTTGGCTGCGCCGAAGATAGAGACAGTTGCTTGACAGGGCTATTTTGCCCCTGTGTTCAGTTTGGGCGTAATGTTGAAAACTTAAGAGATGATGTGCCATGGACCACACCGTGCATTTGTCATGCCATTTTTGTTGAAGGTGGCATGGCTGTTGCAGCAGCCACTGCAATCTTCTATGGTGTTGAGCCAAGAACTTCATTTCTTATCTGCGAGGGTCTGGTGTTTGCATGGTGGATGTGTGGAGTGTATACAGGTCTTGTTCGGCAATCCTTGCAGAAAAAGTATCATCTCAAGAACTCGCCATGTGACCCTTGCTTGGTCCACTGCTGCCTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGCCGTCTTTCCGAAAGTTCTGTGATGCCAATGACTGTCGTCAACCCTCCTCCTGTTCAACAGATGAACAAGCCTGCTGATGACAACAACAACGAGGACTCTGCTGCACCATCCTCTACTAGCAACAATGGGCATACTAATATGGAAATGCAGGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

244

Amino Acids

26.79

Weight (kDa)

4.92

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 188 1e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 52
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 25
AciI CCGC 5 cut(s) 5, 12, 15, 56, 167
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 53
AdeI CACNNNGTG 1 cut(s) 309
AfiI CCNNNNNNNGG 1 cut(s) 514
AflII CTTAAG 1 cut(s) 280
AgsI TTSAA 4 cut(s) 115, 275, 335, 629
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 3 cut(s) 37, 85, 159
AluI AGCT 3 cut(s) 37, 85, 159
Alw21I GWGCWC 2 cut(s) 87, 558
Alw26I GTCTC 1 cut(s) 213
AlwNI CAGNNNCTG 1 cut(s) 362
AoxI GGCC 1 cut(s) 571
ApeKI GCWGC 5 cut(s) 204, 353, 356, 525, 674
AspLEI GCGC 3 cut(s) 27, 55, 209
AspS9I GGNCC 3 cut(s) 300, 517, 571
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 2 cut(s) 300, 517
BanI GGYRCC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 87, 558
BbvI GCAGC 5 cut(s) 191, 365, 368, 512, 661
BccI CCATC 2 cut(s) 104, 688
BceAI ACGGC 2 cut(s) 25, 558
BcgI CGANNNNNNTGC 2 cut(s) 653, 687
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 280
BisI GCNGC 8 cut(s) 13, 56, 167, 205, 354, 357, 526, 675
BlsI GCNGC 8 cut(s) 14, 57, 168, 206, 355, 358, 527, 676
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 2 cut(s) 300, 517
BmgT120I GGNCC 3 cut(s) 300, 517, 571
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 1 cut(s) 585
BmuI ACTGGG 1 cut(s) 201
BoxI GACNNNNGTC 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 182, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 2 cut(s) 196, 539
BseDI CCNNGG 2 cut(s) 182, 296
BseGI GGATG 2 cut(s) 438, 680
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 196, 539
BseRI GAGGAG 1 cut(s) 609
BseXI GCAGC 5 cut(s) 191, 365, 368, 512, 661
BsgI GTGCAG 2 cut(s) 515, 660
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 573
BshNI GGYRCC 1 cut(s) 52
BsiHKAI GWGCWC 2 cut(s) 87, 558
BsiSI CCGG 2 cut(s) 78, 152
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 87, 558
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 5 cut(s) 5, 12, 15, 56, 167
BspANI GGCC 1 cut(s) 573
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 280
BsrI ACTGG 2 cut(s) 196, 539
BssECI CCNNGG 2 cut(s) 182, 296
BssMI GATC 1 cut(s) 46
BssNAI GTATAC 1 cut(s) 447
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 2 cut(s) 182, 296
Bst1107I GTATAC 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 224, 309, 607
BstACI GRCGYC 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 280
BstAPI GCANNNNNTGC 2 cut(s) 362, 469
BstC8I GCNNGC 5 cut(s) 83, 171, 530, 645, 723
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 2 cut(s) 438, 680
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 3 cut(s) 27, 55, 209
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
BstPAI GACNNNNGTC 1 cut(s) 608
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 5 cut(s) 191, 365, 368, 512, 661
BstZ17I GTATAC 1 cut(s) 447
BsuRI GGCC 1 cut(s) 573
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 2 cut(s) 438, 680
BtsI GCAGTG 2 cut(s) 360, 520
BtsIMutI CAGTG 3 cut(s) 360, 520, 532
Cac8I GCNNGC 5 cut(s) 83, 171, 530, 645, 723
CaiI CAGNNNCTG 1 cut(s) 362
CfoI GCGC 3 cut(s) 27, 55, 209
Cfr13I GGNCC 3 cut(s) 300, 517, 571
CviAII CATG 5 cut(s) 297, 320, 343, 426, 501
DdeI CTNAG 1 cut(s) 108
DinI GGCGCC 1 cut(s) 54
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 309
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 182, 296
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 300, 517
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 44
EcoICRI GAGCTC 1 cut(s) 85
EcoT14I CCWWGG 2 cut(s) 182, 296
EcoT38I GRGCYC 1 cut(s) 87
EgeI GGCGCC 1 cut(s) 54
EheI GGCGCC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 182, 296
FaeI CATG 5 cut(s) 300, 323, 346, 429, 504
FatI CATG 5 cut(s) 296, 319, 342, 425, 500
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 8 cut(s) 13, 56, 167, 205, 354, 357, 526, 675
FokI GGATG 2 cut(s) 445, 667
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 8 cut(s) 13, 56, 167, 205, 354, 357, 526, 675
FspBI CTAG 1 cut(s) 690
GlaI GCGC 3 cut(s) 26, 54, 208
GluI GCNGC 8 cut(s) 13, 56, 167, 205, 354, 357, 526, 675
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 573
HapII CCGG 2 cut(s) 78, 152
HhaI GCGC 3 cut(s) 27, 55, 209
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 5 cut(s) 300, 323, 346, 429, 504
Hin6I GCGC 3 cut(s) 25, 53, 207
HinP1I GCGC 3 cut(s) 25, 53, 207
HincII GTYRAC 1 cut(s) 613
HindII GTYRAC 1 cut(s) 613
HinfI GANTC 1 cut(s) 668
HpaII CCGG 2 cut(s) 78, 152
Hpy166II GTNNAC 4 cut(s) 140, 447, 520, 613
Hpy188I TCNGA 2 cut(s) 123, 583
Hpy188III TCNNGA 3 cut(s) 62, 490, 551
Hpy8I GTNNAC 4 cut(s) 140, 447, 520, 613
HpyAV CCTTC 2 cut(s) 329, 562
HpyCH4III ACNGT 3 cut(s) 224, 309, 607
HpyCH4V TGCA 8 cut(s) 312, 353, 365, 425, 472, 532, 677, 721
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
HpyF3I CTNAG 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 5 cut(s) 300, 323, 346, 429, 504
HspAI GCGC 3 cut(s) 25, 53, 207
KasI GGCGCC 1 cut(s) 52
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 5 cut(s) 191, 365, 368, 512, 661
LweI GCATC 1 cut(s) 585
MaeI CTAG 1 cut(s) 690
MaeIII GTNAC 2 cut(s) 17, 503
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 224, 361
MhlI GDGCHC 2 cut(s) 87, 558
Mly113I GGCGCC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 662
MnlI CCTC 7 cut(s) 58, 117, 403, 627, 630, 658, 694
MseI TTAA 1 cut(s) 281
MslI CAYNNNNRTG 1 cut(s) 537
MspCI CTTAAG 1 cut(s) 280
MspI CCGG 2 cut(s) 78, 152
MspR9I CCNGG 1 cut(s) 78
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
NarI GGCGCC 1 cut(s) 53
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 1 cut(s) 296
NdeII GATC 1 cut(s) 46
NlaIII CATG 5 cut(s) 300, 323, 346, 429, 504
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 2 cut(s) 17, 503
OliI CACNNNNGTG 1 cut(s) 537
PkrI GCNGC 8 cut(s) 14, 57, 168, 206, 355, 358, 527, 676
PleI GAGTC 1 cut(s) 662
PluTI GGCGCC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 3 cut(s) 300, 517, 571
PstNI CAGNNNCTG 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 537
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 8 cut(s) 13, 56, 167, 205, 354, 357, 526, 675
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 3 cut(s) 300, 517, 571
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 2 cut(s) 87, 558
SetI ASST 5 cut(s) 39, 87, 161, 340, 454
SfaNI GCATC 1 cut(s) 585
SfoI GGCGCC 1 cut(s) 54
SinI GGWCC 2 cut(s) 300, 517
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 2 cut(s) 280, 488
SmoI CTYRAG 2 cut(s) 280, 488
SsiI CCGC 5 cut(s) 5, 12, 15, 56, 167
SspDI GGCGCC 1 cut(s) 52
SspMI CTAG 1 cut(s) 690
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 2 cut(s) 182, 296
TaaI ACNGT 3 cut(s) 224, 309, 607
TaqI TCGA 1 cut(s) 99
TauI GCSGC 3 cut(s) 15, 58, 169
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TscAI CASTG 3 cut(s) 367, 527, 539
TseFI GTSAC 2 cut(s) 17, 503
TseI GCWGC 5 cut(s) 204, 353, 356, 525, 674
Tsp45I GTSAC 2 cut(s) 17, 503
TspDTI ATGAA 4 cut(s) 147, 384, 581, 650
TspRI CASTG 3 cut(s) 367, 527, 539
Vha464I CTTAAG 1 cut(s) 280
VpaK11BI GGWCC 2 cut(s) 300, 517
XmiI GTMKAC 1 cut(s) 446
XspI CTAG 1 cut(s) 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.