Rh1BG357200

Cell number regulator 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0007068
Physical Location & Seq
Reverse (-)
48812089 .. 48830240
18152 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG357200.1

Sequence Viewer

Length: 732 bp
ATGGCGGACGGGAGCGGTCACTCGCGCTATGTGAAGCTGACGAAAGATCAAGCGCCGCTGCAGGAGGACATTAAGCCCGGCGAGCTCAATCAGCCCATCGATGTTCCTCAGTTGAATGTTCAGAAGTGTCATGAGTGTGGACAACCTTTACCGGAAAGCTTTCAGCCCCCAGCCGATGAACCTTGGACGACTGGAATTTTTGGGTGCAGTGAAGATAGAGACAGTTGCTTGACAGGACTATTTTGTCCCTGTGTTCAGTTTGGGCGTAATATTGAAAACTTAAGAGATGATGTGCCATGGACCACACCATGCATTTGTCATGCCGTTTTTGTTGAAGGTGGCATGGCTGTTGCAGCAGGAACTGCAATCTTCCATGGTGTTGACCCAAGAACTTCATTTCTTATCTGCGAGGGTCTGTTGTTTGCATGGTGGATGTGTGGAGTGTATACAGGTCTTGTTCGGCAATCCTTGCAGAAAAAGTATCATCTTAAGAACTCGCCATGTGACCCTTGCTTGGTGCACTGCTGCCTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGTCGCCTTTTAGAAAATTCTGTGATGCCAATGACTGTTGTCAACCCTCCTCCTGTTCAACAGATGAACAAACCTGCTGATGACAACAACAACCAGGACTCTGATGCACCATCCTCTACTACCAACAATGGGCATACTAATATGGAAATGCAGGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

243

Amino Acids

26.94

Weight (kDa)

5.16

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 62 - 188 1.1e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
Acc36I ACCTGC 1 cut(s) 652
AccBSI CCGCTC 1 cut(s) 15
AccI GTMKAC 1 cut(s) 446
AccII CGCG 1 cut(s) 25
AciI CCGC 3 cut(s) 5, 15, 56
AcsI RAATTY 2 cut(s) 195, 586
AfiI CCNNNNNNNGG 2 cut(s) 514, 699
AflII CTTAAG 2 cut(s) 280, 488
AgsI TTSAA 4 cut(s) 115, 275, 335, 629
AjnI CCWGG 1 cut(s) 663
AleI CACNNNNGTG 1 cut(s) 537
AluBI AGCT 3 cut(s) 37, 85, 159
AluI AGCT 3 cut(s) 37, 85, 159
Alw21I GWGCWC 3 cut(s) 87, 522, 558
Alw26I GTCTC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 518
AlwNI CAGNNNCTG 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 518
ApeKI GCWGC 3 cut(s) 58, 353, 525
ApoI RAATTY 2 cut(s) 195, 586
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 2 cut(s) 27, 55
AspS9I GGNCC 1 cut(s) 300
AsuC2I CCSGG 1 cut(s) 78
AvaII GGWCC 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 522
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 3 cut(s) 87, 522, 558
BbvI GCAGC 3 cut(s) 45, 365, 512
BccI CCATC 2 cut(s) 104, 688
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 665
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 2 cut(s) 280, 488
BfuAI ACCTGC 1 cut(s) 652
BisI GCNGC 4 cut(s) 56, 59, 354, 526
BlsI GCNGC 4 cut(s) 57, 60, 355, 527
Bme1390I CCNGG 2 cut(s) 78, 665
Bme18I GGWCC 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 300
BmrFI CCNGG 2 cut(s) 78, 665
BmsI GCATC 2 cut(s) 585, 664
BoxI GACNNNNGTC 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 182, 296, 373
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 699
Bse1I ACTGG 2 cut(s) 196, 539
BseBI CCWGG 1 cut(s) 665
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 3 cut(s) 182, 296, 373
BseGI GGATG 2 cut(s) 438, 680
BseLI CCNNNNNNNGG 2 cut(s) 514, 699
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 196, 539
BseRI GAGGAG 1 cut(s) 609
BseSI GKGCMC 1 cut(s) 522
BseXI GCAGC 3 cut(s) 45, 365, 512
BseYI CCCAGC 1 cut(s) 169
BsgI GTGCAG 2 cut(s) 226, 515
Bsh1236I CGCG 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 3 cut(s) 87, 522, 558
BsiSI CCGG 2 cut(s) 78, 152
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 514, 699
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 87, 522, 558
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 2 cut(s) 296, 373
BspACI CCGC 3 cut(s) 5, 15, 56
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 130
BspMAI CTGCAG 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 652
BspTI CTTAAG 2 cut(s) 280, 488
BsrBI CCGCTC 1 cut(s) 15
BsrI ACTGG 2 cut(s) 196, 539
BssECI CCNNGG 3 cut(s) 182, 296, 373
BssMI GATC 1 cut(s) 46
BssNAI GTATAC 1 cut(s) 447
BssT1I CCWWGG 3 cut(s) 182, 296, 373
Bst1107I GTATAC 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 665
Bst4CI ACNGT 2 cut(s) 224, 607
BstAFI CTTAAG 2 cut(s) 280, 488
BstAPI GCANNNNNTGC 2 cut(s) 362, 469
BstC8I GCNNGC 3 cut(s) 83, 530, 723
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 2 cut(s) 296, 373
BstF5I GGATG 2 cut(s) 438, 680
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 27, 55
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
BstNI CCWGG 1 cut(s) 665
BstPAI GACNNNNGTC 1 cut(s) 608
BstSCI CCNGG 2 cut(s) 76, 663
BstSFI CTRYAG 1 cut(s) 59
BstSLI GKGCMC 1 cut(s) 522
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 45, 365, 512
BstZ17I GTATAC 1 cut(s) 447
Bsu15I ATCGAT 1 cut(s) 99
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 296, 373
BtsCI GGATG 2 cut(s) 438, 680
BtsI GCAGTG 2 cut(s) 214, 520
BtsIMutI CAGTG 3 cut(s) 214, 520, 532
BveI ACCTGC 1 cut(s) 652
Cac8I GCNNGC 3 cut(s) 83, 530, 723
CaiI CAGNNNCTG 1 cut(s) 362
CciI TCATGA 1 cut(s) 130
CfoI GCGC 2 cut(s) 27, 55
Cfr13I GGNCC 1 cut(s) 300
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 8 cut(s) 131, 297, 309, 320, 343, 374, 426, 501
CviJI RGCY 8 cut(s) 37, 76, 85, 94, 159, 166, 173, 347
CviKI_1 RGCY 8 cut(s) 37, 76, 85, 94, 159, 166, 173, 347
DdeI CTNAG 1 cut(s) 108
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 3 cut(s) 182, 296, 373
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 663
EcoT14I CCWWGG 3 cut(s) 182, 296, 373
EcoT22I ATGCAT 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 182, 296, 373
FaeI CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
FaqI GGGAC 1 cut(s) 231
FatI CATG 8 cut(s) 130, 296, 308, 319, 342, 373, 425, 500
FblI GTMKAC 1 cut(s) 446
Fnu4HI GCNGC 4 cut(s) 56, 59, 354, 526
FokI GGATG 2 cut(s) 445, 667
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 56, 59, 354, 526
GlaI GCGC 2 cut(s) 26, 54
GluI GCNGC 4 cut(s) 56, 59, 354, 526
GsaI CCCAGC 1 cut(s) 173
HaeII RGCGCY 1 cut(s) 56
HapII CCGG 2 cut(s) 78, 152
HhaI GCGC 2 cut(s) 27, 55
Hin1II CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
Hin6I GCGC 2 cut(s) 25, 53
HinP1I GCGC 2 cut(s) 25, 53
HincII GTYRAC 2 cut(s) 382, 613
HindII GTYRAC 2 cut(s) 382, 613
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 1 cut(s) 668
HpaII CCGG 2 cut(s) 78, 152
Hpy166II GTNNAC 5 cut(s) 140, 382, 447, 520, 613
Hpy188I TCNGA 2 cut(s) 123, 673
Hpy188III TCNNGA 2 cut(s) 131, 551
Hpy8I GTNNAC 5 cut(s) 140, 382, 447, 520, 613
HpyAV CCTTC 2 cut(s) 329, 562
HpyCH4III ACNGT 2 cut(s) 224, 607
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
HspAI GCGC 2 cut(s) 25, 53
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 12, 553
Lsp1109I GCAGC 3 cut(s) 45, 365, 512
LweI GCATC 2 cut(s) 585, 664
MaeIII GTNAC 2 cut(s) 17, 503
MalI GATC 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 15
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 224, 361
MhlI GDGCHC 3 cut(s) 87, 522, 558
MluCI AATT 2 cut(s) 195, 586
MlyI GAGTC 1 cut(s) 662
MnlI CCTC 6 cut(s) 58, 117, 403, 627, 630, 694
Mph1103I ATGCAT 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 3 cut(s) 72, 281, 489
MslI CAYNNNNRTG 2 cut(s) 135, 537
MspA1I CMGCKG 1 cut(s) 58
MspCI CTTAAG 2 cut(s) 280, 488
MspI CCGG 2 cut(s) 78, 152
MspR9I CCNGG 2 cut(s) 78, 665
MvaI CCWGG 1 cut(s) 665
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 5 cut(s) 82, 91, 353, 362, 469
NciI CCSGG 1 cut(s) 78
NcoI CCATGG 2 cut(s) 296, 373
NdeII GATC 1 cut(s) 46
NlaIII CATG 8 cut(s) 134, 300, 312, 323, 346, 377, 429, 504
NmuCI GTSAC 2 cut(s) 17, 503
NsiI ATGCAT 1 cut(s) 314
OliI CACNNNNGTG 1 cut(s) 537
PagI TCATGA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 159
PkrI GCNGC 4 cut(s) 57, 60, 355, 527
PleI GAGTC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 662
PshAI GACNNNNGTC 1 cut(s) 608
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 663
PspFI CCCAGC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 663
PspPI GGNCC 1 cut(s) 300
PstI CTGCAG 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 362
RseI CAYNNNNRTG 2 cut(s) 135, 537
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 3 cut(s) 72, 281, 489
SatI GCNGC 4 cut(s) 56, 59, 354, 526
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 300
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 2 cut(s) 78, 665
SduI GDGCHC 3 cut(s) 87, 522, 558
SetI ASST 8 cut(s) 39, 87, 148, 161, 184, 340, 454, 646
SfaNI GCATC 2 cut(s) 585, 664
SfcI CTRYAG 1 cut(s) 59
SinI GGWCC 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 135, 537
SmlI CTYRAG 2 cut(s) 280, 488
SmoI CTYRAG 2 cut(s) 280, 488
Sse9I AATT 2 cut(s) 195, 586
SsiI CCGC 3 cut(s) 5, 15, 56
SspI AATATT 1 cut(s) 271
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 2 cut(s) 76, 663
StyI CCWWGG 3 cut(s) 182, 296, 373
TaaI ACNGT 2 cut(s) 224, 607
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 195, 586
TauI GCSGC 1 cut(s) 58
Tru1I TTAA 3 cut(s) 72, 281, 489
Tru9I TTAA 3 cut(s) 72, 281, 489
TscAI CASTG 3 cut(s) 214, 527, 539
TseFI GTSAC 2 cut(s) 17, 503
TseI GCWGC 3 cut(s) 58, 353, 525
Tsp45I GTSAC 2 cut(s) 17, 503
TspDTI ATGAA 4 cut(s) 192, 384, 581, 650
TspRI CASTG 3 cut(s) 214, 527, 539
Vha464I CTTAAG 2 cut(s) 280, 488
VneI GTGCAC 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 300
XapI RAATTY 2 cut(s) 195, 586
XmiI GTMKAC 1 cut(s) 446
XmnI GAANNNNTTC 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.