Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007068

Physical Location & Seq

Genomic Coordinates Reverse (-)

18002663 .. 18004661

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGGATGGGACTGCGCACTCGCGGTATGTGAAGCTGACGAAAGAACAAGCGCCGGCGGAGGACATTAATCCCGGCGAGCTCAATCAGCCCATCGAAGTTCCTCAGTTGAATGTTCACAGGTGTAACGAATGTGGACAGCCTTTACCCGACAGCTATCAGGCCCCTGCAGATGAGCCTTGGACAACCGGAATTTTTGGCTGTGCTGAAGATAGAGAAAGTTGCTTGACAGGGTTATTTTGTCCATGTGTTCTGTTTGGGCGCAATGTTGAGAGCCTAAGAGACGATGTCCCTTGGAACAGACCTTGCATTTGTCATGCCGTTTGTATTGAAGGTGGTATGGCTCTGGCAGCTTTAACTGCAATCTTCCATGGCATTGACCCAAGGACTTCATTTCTTATTTGCGAGGGTCTGTTATTTTCTTGGTGGATGTGTGGGATATATACAGGTCTTGTCCGGCAATCCTTGCAGAAGAAGTATCATCTAAAGAACTCGCCGTGTGACCCATGCTTGACACACTGCTGCTTGCACTGGTGCGCCTTGTGCCAAGAGCACCGGGAGATGAAGGGACGCCTCTCGGACAATGCTGTGATGCCAATGACTGTCGTCAACCCACCCCAAGTTCAACAGATGAAGTCTGCTGACGACAACCAGGACTCTGCTGCACCATCCTCTACCAGCAATAATGGCCACACCAATATGGAGATGCAGGCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

240

Amino Acids

26.46

Weight (kDa)

5.28

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51400
fragaria_vesca	FvH4_7g27460
malus_domestica	MD01G1182500.v1.1 MD03G1114000.v1.1 MD07G1110500.v1.1 MD07G1253100.v1.1 MD07G1253200.v1.1 MD11G1237200.v1.1 MD13G1258300.v1.1 MD15G1303400.v1.1
prunus_persica	Prupe.2G276700_v2.0.a1
pyrus_communis	pycom01g19270 pycom07g22570
rosa_chinensis	RchiOBHm_Chr1g0374251
rosa_laevigata	RLG00000026749
rosa_multiflora	Rmu_ssc0000007.1_g000024 Rmu_ssc0000007.1_g000032
rosa_roxburghii	Rroxscaffold_4G00283620
rosa_rugosa	Rorug01G0382300
rosa_samantha	Rh1AG393000 Rh1BG357200 Rh1CG370200 Rh1DG387600
rosa_wichuraiana	Rw1G034050 Rw1G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
AccII	CGCG	1 cut(s)	25
AciI	CCGC	3 cut(s)	5, 25, 59
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	571
AgsI	TTSAA	3 cut(s)	112, 332, 626
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	4 cut(s)	37, 82, 156, 353
AluI	AGCT	4 cut(s)	37, 82, 156, 353
Alw21I	GWGCWC	2 cut(s)	84, 555
Alw26I	GTCTC	1 cut(s)	276
AoxI	GGCC	2 cut(s)	162, 688
ApeKI	GCWGC	3 cut(s)	350, 522, 662
ApoI	RAATTY	1 cut(s)	192
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AseI	ATTAAT	1 cut(s)	69
AspLEI	GCGC	4 cut(s)	19, 55, 264, 539
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	75, 557
BalI	TGGCCA	1 cut(s)	690
BanII	GRGCYC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	84, 555
BbvI	GCAGC	3 cut(s)	362, 509, 649
BccI	CCATC	3 cut(s)	2, 101, 676
BceAI	ACGGC	2 cut(s)	305, 481
BciT130I	CCWGG	1 cut(s)	653
BcnI	CCSGG	2 cut(s)	75, 557
BcoDI	GTCTC	1 cut(s)	276
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	56
BisI	GCNGC	3 cut(s)	351, 523, 663
BlsI	GCNGC	3 cut(s)	352, 524, 664
Bme1390I	CCNGG	3 cut(s)	75, 557, 653
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	3 cut(s)	75, 557, 653
BmsI	GCATC	2 cut(s)	582, 696
BoxI	GACNNNNGTC	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	75, 557
BsaHI	GRCGYC	1 cut(s)	571
BsaJI	CCNNGG	4 cut(s)	179, 293, 370, 383
BsaWI	WCCGGW	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	536
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	4 cut(s)	179, 293, 370, 383
BseGI	GGATG	3 cut(s)	13, 435, 668
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	536
BseXI	GCAGC	3 cut(s)	362, 509, 649
BsgI	GTGCAG	1 cut(s)	648
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	2 cut(s)	164, 690
BsiHKAI	GWGCWC	2 cut(s)	84, 555
BsiSI	CCGG	5 cut(s)	56, 75, 189, 457, 556
BslFI	GGGAC	3 cut(s)	25, 275, 582
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	3 cut(s)	25, 275, 582
BsnI	GGCC	2 cut(s)	164, 690
Bsp1286I	GDGCHC	2 cut(s)	84, 555
Bsp19I	CCATGG	1 cut(s)	370
BspACI	CCGC	3 cut(s)	5, 25, 59
BspANI	GGCC	2 cut(s)	164, 690
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	536
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	4 cut(s)	179, 293, 370, 383
BssNI	GRCGYC	1 cut(s)	571
BssT1I	CCWWGG	4 cut(s)	179, 293, 370, 383
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	1 cut(s)	604
BstACI	GRCGYC	1 cut(s)	571
BstAPI	GCANNNNNTGC	1 cut(s)	466
BstC8I	GCNNGC	4 cut(s)	57, 80, 527, 711
BstDEI	CTNAG	2 cut(s)	105, 278
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	3 cut(s)	13, 435, 668
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	4 cut(s)	19, 55, 264, 539
BstMAI	GTCTC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	6 cut(s)	88, 350, 359, 466, 543, 687
BstNI	CCWGG	1 cut(s)	653
BstPAI	GACNNNNGTC	1 cut(s)	605
BstSCI	CCNGG	3 cut(s)	73, 555, 651
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	362, 509, 649
BsuRI	GGCC	2 cut(s)	164, 690
BtgI	CCRYGG	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	13, 435, 668
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	517, 529
Cac8I	GCNNGC	4 cut(s)	57, 80, 527, 711
CfoI	GCGC	4 cut(s)	19, 55, 264, 539
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	163
CseI	GACGC	1 cut(s)	579
CviAII	CATG	4 cut(s)	246, 317, 371, 507
DdeI	CTNAG	2 cut(s)	105, 278
EaeI	YGGCCR	1 cut(s)	688
EciI	GGCGGA	2 cut(s)	20, 74
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	4 cut(s)	179, 293, 370, 383
Eco24I	GRGCYC	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	228
EcoICRI	GAGCTC	1 cut(s)	82
EcoO109I	RGGNCCY	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	4 cut(s)	179, 293, 370, 383
EcoT38I	GRGCYC	1 cut(s)	84
ErhI	CCWWGG	4 cut(s)	179, 293, 370, 383
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	249, 320, 374, 510
FaiI	YATR	9 cut(s)	30, 247, 318, 341, 372, 442, 444, 508, 701
FaqI	GGGAC	3 cut(s)	25, 275, 582
FatI	CATG	4 cut(s)	245, 316, 370, 506
Fnu4HI	GCNGC	3 cut(s)	351, 523, 663
FokI	GGATG	3 cut(s)	20, 442, 655
FriOI	GRGCYC	1 cut(s)	84
Fsp4HI	GCNGC	3 cut(s)	351, 523, 663
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	4 cut(s)	18, 54, 263, 538
GluI	GCNGC	3 cut(s)	351, 523, 663
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	164, 690
HapII	CCGG	5 cut(s)	56, 75, 189, 457, 556
HgaI	GACGC	1 cut(s)	579
HhaI	GCGC	4 cut(s)	19, 55, 264, 539
Hin1I	GRCGYC	1 cut(s)	571
Hin1II	CATG	4 cut(s)	249, 320, 374, 510
Hin6I	GCGC	4 cut(s)	17, 53, 262, 537
HinP1I	GCGC	4 cut(s)	17, 53, 262, 537
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	1 cut(s)	656
HpaII	CCGG	5 cut(s)	56, 75, 189, 457, 556
Hpy166II	GTNNAC	3 cut(s)	118, 137, 610
Hpy188I	TCNGA	1 cut(s)	580
Hpy8I	GTNNAC	3 cut(s)	118, 137, 610
HpyAV	CCTTC	2 cut(s)	326, 559
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4V	TGCA	7 cut(s)	170, 309, 362, 469, 529, 665, 709
HpyF10VI	GCNNNNNNNGC	6 cut(s)	88, 350, 359, 466, 543, 687
HpyF3I	CTNAG	2 cut(s)	105, 278
Hsp92I	GRCGYC	1 cut(s)	571
Hsp92II	CATG	4 cut(s)	249, 320, 374, 510
HspAI	GCGC	4 cut(s)	17, 53, 262, 537
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Lsp1109I	GCAGC	3 cut(s)	362, 509, 649
LweI	GCATC	2 cut(s)	582, 696
MaeIII	GTNAC	2 cut(s)	125, 500
MboII	GAAGA	3 cut(s)	221, 358, 484
MhlI	GDGCHC	2 cut(s)	84, 555
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	1 cut(s)	192
MluNI	TGGCCA	1 cut(s)	690
MlyI	GAGTC	1 cut(s)	650
MnlI	CCTC	5 cut(s)	55, 114, 400, 584, 682
Mox20I	TGGCCA	1 cut(s)	690
MreI	CGCCGGCG	1 cut(s)	55
MroNI	GCCGGC	1 cut(s)	55
MscI	TGGCCA	1 cut(s)	690
MseI	TTAA	2 cut(s)	69, 356
MslI	CAYNNNNRTG	1 cut(s)	698
Msp20I	TGGCCA	1 cut(s)	690
MspI	CCGG	5 cut(s)	56, 75, 189, 457, 556
MspR9I	CCNGG	3 cut(s)	75, 557, 653
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	6 cut(s)	88, 350, 359, 466, 543, 687
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	2 cut(s)	75, 557
NcoI	CCATGG	1 cut(s)	370
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	4 cut(s)	249, 320, 374, 510
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	500
NsbI	TGCGCA	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	57
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	352, 524, 664
PleI	GAGTC	1 cut(s)	650
PpsI	GAGTC	1 cut(s)	650
PshAI	GACNNNNGTC	1 cut(s)	605
PshBI	ATTAAT	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	698
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	69, 356
SatI	GCNGC	3 cut(s)	351, 523, 663
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	650
ScrFI	CCNGG	3 cut(s)	75, 557, 653
SduI	GDGCHC	2 cut(s)	84, 555
SetI	ASST	8 cut(s)	39, 84, 125, 158, 307, 337, 355, 451
SfaNI	GCATC	2 cut(s)	582, 696
SfcI	CTRYAG	1 cut(s)	168
SgrAI	CRCCGGYG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	698
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	5, 25, 59
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	73, 555, 651
StyI	CCWWGG	4 cut(s)	179, 293, 370, 383
TaaI	ACNGT	1 cut(s)	604
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	69, 356
Tru9I	TTAA	2 cut(s)	69, 356
TscAI	CASTG	2 cut(s)	524, 536
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	3 cut(s)	350, 522, 662
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	3 cut(s)	381, 578, 647
TspRI	CASTG	2 cut(s)	524, 536
Tth111I	GACNNNGTC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.