RLG00000026749

Cell number regulator 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0007068
Physical Location & Seq
Forward (+)
5610354 .. 5612151
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026749

Sequence Viewer

Length: 876 bp
ATGGAGGATGGAAGCGGTCACTCGCGTTATGTGAAGCTGACGAAAGATCAAGCACCGCTTCAGGAGGACATTAAGCCCGGCGAGCTCAATCAGCCCATCGATGTTCCTCAGGTGTCTCCTCTTATTCCTCTTCGATCTAATTTTACTCTTCTTTATTTGTTTCGTGCCGACTCTGAAATGAATTACAGATCAGAGATGGAGGGAGATGAATGTGACAACTTGGATGTGGATTGTAATTTATGGGGTAGATTGCGTTTGAATGTTCAGAAGTGTCATGAGTGTGGACAGCCTTTACCGGAAAGCTTTCGGCCCCCGGCCAATGAACCTTGGACGACTGGAATTTTTGGCTGCAGTGAAGATAGAGACAGTTGCTTGACAGGACTATTTTGTCCCTGTGTTCAGTTTGGGCGTAATATTGAAAACTTAAGAGATGATGTGCCATGGACCACACCATGCATTTGTCATGCCGTTTTTGTTGAAGGTGGCATGGCTGTTGCAGCAGGAACTGCAATCTTCCATGGTGTTGACCCAAGAACTTCATTTCTTATCTGCGAGGGTCTGTTGTTTGCATGGTGGATGTGTGGAGTGTATACAGGTCTTGTTCGGCAATCCTTGCAGAAAAAGTATCATCTTGAGAACTCGCCATGTGACCCTTGCCTGGTGCATTGCTGCCTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGTCGCCTTTCAGAAAATTCTGTGATGCCAATGACCGTTGTCAACCCTCCTCCTGTTCAACAGATGAACAAACCTGCTGATGACAACAACAACCAGGACTCTGATGCACCATCCTCTACTACCAACGATGGGCATACTAATATGGAAATGCAGGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

292

Amino Acids

32.65

Weight (kDa)

4.82

Isoelectric Point (pI)

50.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 110 - 236 1.8e-27 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 387
Acc36I ACCTGC 1 cut(s) 796
AccI GTMKAC 1 cut(s) 590
AccII CGCG 1 cut(s) 25
AciI CCGC 2 cut(s) 15, 56
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 2 cut(s) 339, 730
AcuI CTGAAG 1 cut(s) 44
AfiI CCNNNNNNNGG 2 cut(s) 658, 843
AflII CTTAAG 1 cut(s) 424
AgsI TTSAA 4 cut(s) 259, 419, 479, 773
AjnI CCWGG 2 cut(s) 657, 807
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 3 cut(s) 37, 85, 303
AluI AGCT 3 cut(s) 37, 85, 303
Alw21I GWGCWC 2 cut(s) 87, 702
Alw26I GTCTC 2 cut(s) 120, 357
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 2 cut(s) 308, 315
ApeKI GCWGC 3 cut(s) 348, 497, 669
ApoI RAATTY 2 cut(s) 339, 730
Asp700I GAANNNNTTC 1 cut(s) 303
AspS9I GGNCC 2 cut(s) 309, 444
AsuC2I CCSGG 2 cut(s) 78, 314
AvaII GGWCC 1 cut(s) 444
AxyI CCTNAGG 1 cut(s) 108
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 87, 702
BbvI GCAGC 3 cut(s) 335, 509, 656
BccI CCATC 5 cut(s) 2, 104, 190, 832, 836
BceAI ACGGC 1 cut(s) 452
BciT130I CCWGG 2 cut(s) 659, 809
BcnI CCSGG 2 cut(s) 78, 314
BcoDI GTCTC 2 cut(s) 120, 357
BfmI CTRYAG 1 cut(s) 349
BfrI CTTAAG 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 796
BisI GCNGC 3 cut(s) 349, 498, 670
BlsI GCNGC 3 cut(s) 350, 499, 671
Bme1390I CCNGG 4 cut(s) 78, 314, 659, 809
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 2 cut(s) 309, 444
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 4 cut(s) 78, 314, 659, 809
BmsI GCATC 2 cut(s) 729, 808
BoxI GACNNNNGTC 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 2 cut(s) 78, 314
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 312, 326, 440, 517
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 658, 843
Bse1I ACTGG 2 cut(s) 340, 683
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 664
BseBI CCWGG 2 cut(s) 659, 809
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 4 cut(s) 312, 326, 440, 517
BseGI GGATG 4 cut(s) 13, 229, 582, 824
BseLI CCNNNNNNNGG 2 cut(s) 658, 843
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 122
BseNI ACTGG 2 cut(s) 340, 683
BseRI GAGGAG 2 cut(s) 108, 753
BseXI GCAGC 3 cut(s) 335, 509, 656
BsgI GTGCAG 1 cut(s) 659
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 310, 317
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 87, 702
BsiSI CCGG 3 cut(s) 78, 296, 314
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 658, 843
BsmAI GTCTC 2 cut(s) 120, 357
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 310, 317
Bsp1286I GDGCHC 2 cut(s) 87, 702
Bsp143I GATC 3 cut(s) 46, 134, 188
Bsp19I CCATGG 2 cut(s) 440, 517
BspACI CCGC 2 cut(s) 15, 56
BspANI GGCC 2 cut(s) 310, 317
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 311
BspMAI CTGCAG 1 cut(s) 353
BspMI ACCTGC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 424
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 2 cut(s) 340, 683
BssECI CCNNGG 4 cut(s) 312, 326, 440, 517
BssMI GATC 3 cut(s) 46, 134, 188
BssNAI GTATAC 1 cut(s) 591
BssT1I CCWWGG 3 cut(s) 326, 440, 517
Bst1107I GTATAC 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 659, 809
Bst4CI ACNGT 2 cut(s) 368, 751
Bst6I CTCTTC 2 cut(s) 135, 153
BstAFI CTTAAG 1 cut(s) 424
BstAPI GCANNNNNTGC 2 cut(s) 506, 613
BstC8I GCNNGC 3 cut(s) 83, 674, 867
BstDEI CTNAG 1 cut(s) 108
BstDSI CCRYGG 2 cut(s) 440, 517
BstF5I GGATG 4 cut(s) 13, 229, 582, 824
BstFNI CGCG 1 cut(s) 25
BstKTI GATC 3 cut(s) 49, 137, 191
BstMAI GTCTC 2 cut(s) 120, 357
BstMBI GATC 3 cut(s) 46, 134, 188
BstMWI GCNNNNNNNGC 5 cut(s) 82, 91, 497, 506, 613
BstNI CCWGG 2 cut(s) 659, 809
BstPAI GACNNNNGTC 1 cut(s) 752
BstSCI CCNGG 4 cut(s) 76, 312, 657, 807
BstSFI CTRYAG 1 cut(s) 349
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 335, 509, 656
BstZ17I GTATAC 1 cut(s) 591
Bsu15I ATCGAT 1 cut(s) 99
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 2 cut(s) 310, 317
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 440, 517
BtsCI GGATG 4 cut(s) 13, 229, 582, 824
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 358, 676
BveI ACCTGC 1 cut(s) 796
Cac8I GCNNGC 3 cut(s) 83, 674, 867
CaiI CAGNNNCTG 1 cut(s) 506
CciI TCATGA 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 309, 444
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 8 cut(s) 275, 441, 453, 464, 487, 518, 570, 645
DdeI CTNAG 1 cut(s) 108
DpnI GATC 3 cut(s) 48, 136, 190
DpnII GATC 3 cut(s) 46, 134, 188
DrdI GACNNNNNNGTC 1 cut(s) 387
DseDI GACNNNNNNGTC 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 2 cut(s) 135, 153
EarI CTCTTC 2 cut(s) 135, 153
Ecl136II GAGCTC 1 cut(s) 85
Eco130I CCWWGG 3 cut(s) 326, 440, 517
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 444
Eco53kI GAGCTC 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 44
Eco81I CCTNAGG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 657, 807
EcoT14I CCWWGG 3 cut(s) 326, 440, 517
EcoT22I ATGCAT 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 326, 440, 517
FaeI CATG 8 cut(s) 278, 444, 456, 467, 490, 521, 573, 648
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 375
FatI CATG 8 cut(s) 274, 440, 452, 463, 486, 517, 569, 644
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 3 cut(s) 349, 498, 670
FokI GGATG 4 cut(s) 20, 236, 589, 811
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 3 cut(s) 349, 498, 670
GluI GCNGC 3 cut(s) 349, 498, 670
HaeIII GGCC 2 cut(s) 310, 317
HapII CCGG 3 cut(s) 78, 296, 314
Hin1II CATG 8 cut(s) 278, 444, 456, 467, 490, 521, 573, 648
HincII GTYRAC 2 cut(s) 526, 757
HindII GTYRAC 2 cut(s) 526, 757
HindIII AAGCTT 1 cut(s) 301
HinfI GANTC 2 cut(s) 170, 812
HpaII CCGG 3 cut(s) 78, 296, 314
Hpy166II GTNNAC 4 cut(s) 284, 526, 591, 757
Hpy188I TCNGA 5 cut(s) 175, 193, 267, 727, 817
Hpy188III TCNNGA 4 cut(s) 62, 275, 632, 695
Hpy8I GTNNAC 4 cut(s) 284, 526, 591, 757
HpyAV CCTTC 2 cut(s) 473, 706
HpyCH4III ACNGT 2 cut(s) 368, 751
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 91, 497, 506, 613
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 8 cut(s) 278, 444, 456, 467, 490, 521, 573, 648
Kzo9I GATC 3 cut(s) 46, 134, 188
LmnI GCTCC 1 cut(s) 697
Lsp1109I GCAGC 3 cut(s) 335, 509, 656
LweI GCATC 2 cut(s) 729, 808
MaeIII GTNAC 3 cut(s) 17, 212, 647
MalI GATC 3 cut(s) 48, 136, 190
MboI GATC 3 cut(s) 46, 134, 188
MboII GAAGA 4 cut(s) 122, 140, 368, 505
MhlI GDGCHC 2 cut(s) 87, 702
MluCI AATT 5 cut(s) 139, 181, 235, 339, 730
MlyI GAGTC 2 cut(s) 164, 806
MnlI CCTC 9 cut(s) 58, 117, 129, 138, 193, 547, 771, 774, 838
Mph1103I ATGCAT 1 cut(s) 458
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 2 cut(s) 72, 425
MslI CAYNNNNRTG 2 cut(s) 279, 681
MspCI CTTAAG 1 cut(s) 424
MspI CCGG 3 cut(s) 78, 296, 314
MspR9I CCNGG 4 cut(s) 78, 314, 659, 809
MvaI CCWGG 2 cut(s) 659, 809
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 5 cut(s) 82, 91, 497, 506, 613
NciI CCSGG 2 cut(s) 78, 314
NcoI CCATGG 2 cut(s) 440, 517
NdeII GATC 3 cut(s) 46, 134, 188
NlaIII CATG 8 cut(s) 278, 444, 456, 467, 490, 521, 573, 648
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 3 cut(s) 17, 212, 647
NsiI ATGCAT 1 cut(s) 458
OliI CACNNNNGTG 1 cut(s) 681
PagI TCATGA 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 303
PkrI GCNGC 3 cut(s) 350, 499, 671
PleI GAGTC 2 cut(s) 164, 806
PpsI GAGTC 2 cut(s) 164, 806
PshAI GACNNNNGTC 1 cut(s) 752
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 657, 807
PspGI CCWGG 2 cut(s) 657, 807
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 2 cut(s) 309, 444
PstI CTGCAG 1 cut(s) 353
PstNI CAGNNNCTG 1 cut(s) 506
RseI CAYNNNNRTG 2 cut(s) 279, 681
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 2 cut(s) 72, 425
SatI GCNGC 3 cut(s) 349, 498, 670
Sau3AI GATC 3 cut(s) 46, 134, 188
Sau96I GGNCC 2 cut(s) 309, 444
SchI GAGTC 2 cut(s) 164, 806
ScrFI CCNGG 4 cut(s) 78, 314, 659, 809
SduI GDGCHC 2 cut(s) 87, 702
SetI ASST 8 cut(s) 39, 87, 114, 305, 328, 484, 598, 790
SfaNI GCATC 2 cut(s) 729, 808
SfcI CTRYAG 1 cut(s) 349
SinI GGWCC 1 cut(s) 444
SmiMI CAYNNNNRTG 2 cut(s) 279, 681
SmlI CTYRAG 2 cut(s) 424, 632
SmoI CTYRAG 2 cut(s) 424, 632
Sse9I AATT 5 cut(s) 139, 181, 235, 339, 730
SsiI CCGC 2 cut(s) 15, 56
SspI AATATT 1 cut(s) 415
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 76, 312, 657, 807
StyI CCWWGG 3 cut(s) 326, 440, 517
TaaI ACNGT 2 cut(s) 368, 751
TaqI TCGA 2 cut(s) 99, 133
TasI AATT 5 cut(s) 139, 181, 235, 339, 730
Tru1I TTAA 2 cut(s) 72, 425
Tru9I TTAA 2 cut(s) 72, 425
TscAI CASTG 2 cut(s) 358, 683
TseFI GTSAC 3 cut(s) 17, 212, 647
TseI GCWGC 3 cut(s) 348, 497, 669
Tsp45I GTSAC 3 cut(s) 17, 212, 647
TspDTI ATGAA 6 cut(s) 194, 222, 336, 528, 725, 794
TspRI CASTG 2 cut(s) 358, 683
Vha464I CTTAAG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 2 cut(s) 339, 730
XmiI GTMKAC 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 303
Zsp2I ATGCAT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.