Rroxscaffold_4G00283620

Cell number regulator 6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007068
Physical Location & Seq
Forward (+)
5515511 .. 5517671
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00283620.1

Sequence Viewer

Length: 795 bp
ATGGCGGACGGAAGCGGTCACTCGCGCTATGTGAAGCTGACGAAAGATCAAGCGCCGCTGCAGGAGGACATTAAGCCCGGCGAGCTCAATCAGCCCATCGATGTTCCTCAGTTGAATGTTCAGAAGTGTCATGAGTGTGGACAACCTTTACCGGAAAGCTTTCAGCCCCGGCCGATGAACCTTGGACGACTGGAATTTTTGGCTGCAGTGAAGATAGAGACAGTTTATTTTACATCTCTTTCAGTTTTCATTAGAAATATTAAGTGCTCAGAACTGGATTTTGTGCTTGCCCTTCAAAATAATGATAAGTTTAGCAATGCATTTGGGCGTAATATTGAAAACTTAAGAGATGATGTGCCATGGACCACACCATGCATTTGTCATGCCGTTTTTGTTGAAGGTGGCATGGCTGTTGCAGCAGGAACTGCAATCTTCCATGGTGTTGACCCAAGAACTTCATTTCTTATCTGCGAGGGTCTGTTGTTTGCATGGTGGATGTGTGGAGTGTATACAGGTCTTGTTCGGCAATCCTTGCAGAAAAAGTATCATCTTAAGAACTCGCCATGTGACCCTTGCTTGGTGCACTGCTGCCTGCACTGGTGTGCCTTGTGTCAGGAGCACAGGGAGATGAAGGGTCGCCTTTCAGAAAATTCTGTGATGCCAATGACGGTTGTCAACCCTCCTCCTGTTCAACAGATGAACAAACCTGCTGATGACAACAACAACCAGGACTCTGCTGCACCAGCCTCTACTACCAACGATGGGCATACTAATATGGAAATGCAGGCATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

264

Amino Acids

29.45

Weight (kDa)

5.83

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 107 - 209 3.7e-17 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 715
AccI GTMKAC 1 cut(s) 509
AccII CGCG 1 cut(s) 25
AciI CCGC 3 cut(s) 5, 15, 56
AcoI YGGCCR 1 cut(s) 170
AcsI RAATTY 2 cut(s) 194, 649
AfiI CCNNNNNNNGG 2 cut(s) 577, 762
AflII CTTAAG 2 cut(s) 343, 551
AgsI TTSAA 5 cut(s) 115, 296, 338, 398, 692
AjnI CCWGG 1 cut(s) 726
AleI CACNNNNGTG 1 cut(s) 600
AluBI AGCT 3 cut(s) 37, 85, 159
AluI AGCT 3 cut(s) 37, 85, 159
Alw21I GWGCWC 4 cut(s) 87, 269, 585, 621
Alw26I GTCTC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 581
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 1 cut(s) 170
ApaLI GTGCAC 1 cut(s) 581
ApeKI GCWGC 5 cut(s) 58, 203, 416, 588, 737
ApoI RAATTY 2 cut(s) 194, 649
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 2 cut(s) 27, 55
AspS9I GGNCC 1 cut(s) 363
AsuC2I CCSGG 2 cut(s) 78, 169
AvaII GGWCC 1 cut(s) 363
BaeGI GKGCMC 1 cut(s) 585
BanII GRGCYC 1 cut(s) 87
Bbv12I GWGCWC 4 cut(s) 87, 269, 585, 621
BbvI GCAGC 5 cut(s) 45, 190, 428, 575, 724
BccI CCATC 2 cut(s) 104, 755
BceAI ACGGC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 728
BcnI CCSGG 2 cut(s) 78, 169
BcoDI GTCTC 1 cut(s) 212
BfmI CTRYAG 2 cut(s) 59, 204
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 2 cut(s) 343, 551
BfuAI ACCTGC 1 cut(s) 715
BisI GCNGC 6 cut(s) 56, 59, 204, 417, 589, 738
BlsI GCNGC 6 cut(s) 57, 60, 205, 418, 590, 739
Bme1390I CCNGG 3 cut(s) 78, 169, 728
Bme18I GGWCC 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 363
BmrFI CCNGG 3 cut(s) 78, 169, 728
BmsI GCATC 1 cut(s) 648
BoxI GACNNNNGTC 1 cut(s) 671
BpuMI CCSGG 2 cut(s) 78, 169
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 4 cut(s) 167, 181, 359, 436
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 577, 762
Bse1I ACTGG 3 cut(s) 195, 279, 602
Bse3DI GCAATG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 728
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 4 cut(s) 167, 181, 359, 436
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 2 cut(s) 577, 762
BseMI GCAATG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 122, 282
BseNI ACTGG 3 cut(s) 195, 279, 602
BseRI GAGGAG 1 cut(s) 672
BseSI GKGCMC 1 cut(s) 585
BseX3I CGGCCG 1 cut(s) 170
BseXI GCAGC 5 cut(s) 45, 190, 428, 575, 724
BsgI GTGCAG 2 cut(s) 578, 723
Bsh1236I CGCG 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 172
BshVI ATCGAT 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 173
BsiHKAI GWGCWC 4 cut(s) 87, 269, 585, 621
BsiSI CCGG 3 cut(s) 78, 152, 169
BslI CCNNNNNNNGG 2 cut(s) 577, 762
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 1 cut(s) 172
Bsp1286I GDGCHC 4 cut(s) 87, 269, 585, 621
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 2 cut(s) 359, 436
BspACI CCGC 3 cut(s) 5, 15, 56
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 2 cut(s) 121, 281
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 130
BspMAI CTGCAG 2 cut(s) 63, 208
BspMI ACCTGC 1 cut(s) 715
BspTI CTTAAG 2 cut(s) 343, 551
BsrDI GCAATG 1 cut(s) 322
BsrI ACTGG 3 cut(s) 195, 279, 602
BssECI CCNNGG 4 cut(s) 167, 181, 359, 436
BssMI GATC 1 cut(s) 46
BssNAI GTATAC 1 cut(s) 510
BssT1I CCWWGG 3 cut(s) 181, 359, 436
Bst1107I GTATAC 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 728
Bst4CI ACNGT 2 cut(s) 223, 670
BstAFI CTTAAG 2 cut(s) 343, 551
BstAPI GCANNNNNTGC 2 cut(s) 425, 532
BstC8I GCNNGC 4 cut(s) 83, 288, 593, 786
BstDEI CTNAG 2 cut(s) 108, 268
BstDSI CCRYGG 2 cut(s) 359, 436
BstF5I GGATG 1 cut(s) 501
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 27, 55
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 173
BstMWI GCNNNNNNNGC 6 cut(s) 82, 91, 416, 425, 532, 743
BstNI CCWGG 1 cut(s) 728
BstPAI GACNNNNGTC 1 cut(s) 671
BstSCI CCNGG 3 cut(s) 76, 167, 726
BstSFI CTRYAG 2 cut(s) 59, 204
BstSLI GKGCMC 1 cut(s) 585
BstUI CGCG 1 cut(s) 25
BstV1I GCAGC 5 cut(s) 45, 190, 428, 575, 724
BstZ17I GTATAC 1 cut(s) 510
BstZI CGGCCG 1 cut(s) 170
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 1 cut(s) 172
BsuTUI ATCGAT 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 359, 436
BtsCI GGATG 1 cut(s) 501
BtsI GCAGTG 2 cut(s) 213, 583
BtsIMutI CAGTG 3 cut(s) 213, 583, 595
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 4 cut(s) 83, 288, 593, 786
CaiI CAGNNNCTG 1 cut(s) 425
CciI TCATGA 1 cut(s) 130
CfoI GCGC 2 cut(s) 27, 55
Cfr13I GGNCC 1 cut(s) 363
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 8 cut(s) 131, 360, 372, 383, 406, 437, 489, 564
DdeI CTNAG 2 cut(s) 108, 268
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 170
EagI CGGCCG 1 cut(s) 170
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 170
Eco130I CCWWGG 3 cut(s) 181, 359, 436
Eco24I GRGCYC 1 cut(s) 87
Eco47I GGWCC 1 cut(s) 363
Eco52I CGGCCG 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 85
EcoRII CCWGG 1 cut(s) 726
EcoT14I CCWWGG 3 cut(s) 181, 359, 436
EcoT22I ATGCAT 2 cut(s) 322, 377
EcoT38I GRGCYC 1 cut(s) 87
ErhI CCWWGG 3 cut(s) 181, 359, 436
FaeI CATG 8 cut(s) 134, 363, 375, 386, 409, 440, 492, 567
FatI CATG 8 cut(s) 130, 359, 371, 382, 405, 436, 488, 563
FblI GTMKAC 1 cut(s) 509
Fnu4HI GCNGC 6 cut(s) 56, 59, 204, 417, 589, 738
FokI GGATG 1 cut(s) 508
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 6 cut(s) 56, 59, 204, 417, 589, 738
GlaI GCGC 2 cut(s) 26, 54
GluI GCNGC 6 cut(s) 56, 59, 204, 417, 589, 738
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 1 cut(s) 172
HapII CCGG 3 cut(s) 78, 152, 169
HhaI GCGC 2 cut(s) 27, 55
Hin1II CATG 8 cut(s) 134, 363, 375, 386, 409, 440, 492, 567
Hin6I GCGC 2 cut(s) 25, 53
HinP1I GCGC 2 cut(s) 25, 53
HincII GTYRAC 2 cut(s) 445, 676
HindII GTYRAC 2 cut(s) 445, 676
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 1 cut(s) 731
HpaII CCGG 3 cut(s) 78, 152, 169
Hpy166II GTNNAC 5 cut(s) 140, 445, 510, 583, 676
Hpy188I TCNGA 3 cut(s) 123, 271, 646
Hpy188III TCNNGA 2 cut(s) 131, 614
Hpy8I GTNNAC 5 cut(s) 140, 445, 510, 583, 676
HpyAV CCTTC 3 cut(s) 302, 392, 625
HpyCH4III ACNGT 2 cut(s) 223, 670
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 91, 416, 425, 532, 743
HpyF3I CTNAG 2 cut(s) 108, 268
Hsp92II CATG 8 cut(s) 134, 363, 375, 386, 409, 440, 492, 567
HspAI GCGC 2 cut(s) 25, 53
Kzo9I GATC 1 cut(s) 46
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 5 cut(s) 45, 190, 428, 575, 724
LweI GCATC 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 17, 566
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 223, 424
MhlI GDGCHC 4 cut(s) 87, 269, 585, 621
MluCI AATT 2 cut(s) 194, 649
MlyI GAGTC 1 cut(s) 725
MnlI CCTC 6 cut(s) 58, 117, 466, 690, 693, 757
Mph1103I ATGCAT 2 cut(s) 322, 377
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 4 cut(s) 72, 261, 344, 552
MslI CAYNNNNRTG 2 cut(s) 135, 600
MspA1I CMGCKG 1 cut(s) 58
MspCI CTTAAG 2 cut(s) 343, 551
MspI CCGG 3 cut(s) 78, 152, 169
MspR9I CCNGG 3 cut(s) 78, 169, 728
MvaI CCWGG 1 cut(s) 728
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 6 cut(s) 82, 91, 416, 425, 532, 743
NciI CCSGG 2 cut(s) 78, 169
NcoI CCATGG 2 cut(s) 359, 436
NdeII GATC 1 cut(s) 46
NlaIII CATG 8 cut(s) 134, 363, 375, 386, 409, 440, 492, 567
NmuCI GTSAC 2 cut(s) 17, 566
NsiI ATGCAT 2 cut(s) 322, 377
OliI CACNNNNGTG 1 cut(s) 600
PagI TCATGA 1 cut(s) 130
PdmI GAANNNNTTC 1 cut(s) 159
PkrI GCNGC 6 cut(s) 57, 60, 205, 418, 590, 739
PleI GAGTC 1 cut(s) 725
PpsI GAGTC 1 cut(s) 725
PshAI GACNNNNGTC 1 cut(s) 671
Psp124BI GAGCTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 726
PspGI CCWGG 1 cut(s) 726
PspPI GGNCC 1 cut(s) 363
PstI CTGCAG 2 cut(s) 63, 208
PstNI CAGNNNCTG 1 cut(s) 425
RseI CAYNNNNRTG 2 cut(s) 135, 600
SacI GAGCTC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 72, 261, 344, 552
SatI GCNGC 6 cut(s) 56, 59, 204, 417, 589, 738
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 363
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 3 cut(s) 78, 169, 728
SduI GDGCHC 4 cut(s) 87, 269, 585, 621
SetI ASST 8 cut(s) 39, 87, 148, 161, 183, 403, 517, 709
SfaNI GCATC 1 cut(s) 648
SfcI CTRYAG 2 cut(s) 59, 204
SinI GGWCC 1 cut(s) 363
SmiMI CAYNNNNRTG 2 cut(s) 135, 600
SmlI CTYRAG 2 cut(s) 343, 551
SmoI CTYRAG 2 cut(s) 343, 551
Sse9I AATT 2 cut(s) 194, 649
SsiI CCGC 3 cut(s) 5, 15, 56
SspI AATATT 2 cut(s) 259, 334
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 76, 167, 726
StyI CCWWGG 3 cut(s) 181, 359, 436
TaaI ACNGT 2 cut(s) 223, 670
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 194, 649
TauI GCSGC 1 cut(s) 58
Tru1I TTAA 4 cut(s) 72, 261, 344, 552
Tru9I TTAA 4 cut(s) 72, 261, 344, 552
TscAI CASTG 3 cut(s) 213, 590, 602
TseFI GTSAC 2 cut(s) 17, 566
TseI GCWGC 5 cut(s) 58, 203, 416, 588, 737
Tsp45I GTSAC 2 cut(s) 17, 566
TspDTI ATGAA 5 cut(s) 191, 238, 447, 644, 713
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 3 cut(s) 213, 590, 602
Vha464I CTTAAG 2 cut(s) 343, 551
VneI GTGCAC 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 363
XapI RAATTY 2 cut(s) 194, 649
XmiI GTMKAC 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 159
Zsp2I ATGCAT 2 cut(s) 322, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.