Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007068

Physical Location & Seq

Genomic Coordinates Reverse (-)

27802340 .. 27805188

Gene Structure 2849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G276700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCGGATGGAACTGGGCACTCGCGTTATGTGAAGCTGACGAAAGATCAAGCGCCTGTGGATGACATTAAGCCTGGGGAGCTCAATCAGCCCATCGAAGTTCCTCAGTTGAATGTTCACAGGTGTAACGAATGTGGACAACCTTTACCTGAAAGCTATCAGCCACCTGCAGATGAACCTTGGACAACTGGAATTTTTGGCTGTGCCGAGGATAGAGAAAGTTGCTTGTCAGGGCTCTTTTGTCCATGTGTTCTGTTTGGGCATAATGTTGAAAGCTTAAGAGACGATATCCCTTGGACGAGACCATGCATTTGTCATGCCATTTTTATTGAAGGTGGCATGGCTCTGGCAGCAGCAACTGCAATCTTCTATGGTGTTGACCCAAAGACTTCGTTTCTTATTTGTGAGGGTCTGTTCTTTTCTTGGTGGATGTGTGGGGTATACACAGGACTTGTTCGCCAATCCTTACAGAAAAAATATCATCTGAAGAACTCGCCGTGTGACCCGTGCTTGACCCACTGCTGCTTACACTGGTGTGCCTTGTGCCAGGAGCACAGGGAGAGGAAGGGCCGCCTATCGGACAACGCTGTGATGCCAATGACCGTCGTCAACCCTCCCCCTGTTCAACAAATGAAGCCTGCTGATGACAACAACCAGGACTCTGCTGACAACAACGGGCATACCAATATGGAAATGCAGGCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

236

Amino Acids

26.2

Weight (kDa)

5.28

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51400
fragaria_vesca	FvH4_7g27460
malus_domestica	MD01G1182500.v1.1 MD03G1114000.v1.1 MD07G1110500.v1.1 MD07G1253100.v1.1 MD07G1253200.v1.1 MD11G1237200.v1.1 MD13G1258300.v1.1 MD15G1303400.v1.1
prunus_persica	Prupe.2G276700_v2.0.a1
pyrus_communis	pycom01g19270 pycom07g22570
rosa_chinensis	RchiOBHm_Chr1g0374251
rosa_laevigata	RLG00000026749
rosa_multiflora	Rmu_ssc0000007.1_g000024 Rmu_ssc0000007.1_g000032
rosa_roxburghii	Rroxscaffold_4G00283620
rosa_rugosa	Rorug01G0382300
rosa_samantha	Rh1AG393000 Rh1BG357200 Rh1CG370200 Rh1DG387600
rosa_wichuraiana	Rw1G034050 Rw1G034290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	175
Acc36I	ACCTGC	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	441
AccII	CGCG	1 cut(s)	25
AciI	CCGC	2 cut(s)	5, 571
AcsI	RAATTY	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	506
AfiI	CCNNNNNNNGG	1 cut(s)	577
AflII	CTTAAG	1 cut(s)	277
AgsI	TTSAA	4 cut(s)	112, 272, 332, 626
AjnI	CCWGG	3 cut(s)	73, 546, 654
AleI	CACNNNNGTG	1 cut(s)	534
AluBI	AGCT	4 cut(s)	37, 82, 156, 276
AluI	AGCT	4 cut(s)	37, 82, 156, 276
Alw21I	GWGCWC	2 cut(s)	84, 555
Alw26I	GTCTC	2 cut(s)	276, 295
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	3 cut(s)	350, 353, 522
ApoI	RAATTY	1 cut(s)	192
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	1 cut(s)	568
BaeGI	GKGCMC	1 cut(s)	21
BanII	GRGCYC	2 cut(s)	84, 237
Bbv12I	GWGCWC	2 cut(s)	84, 555
BbvI	GCAGC	3 cut(s)	362, 365, 509
BccI	CCATC	2 cut(s)	2, 101
BceAI	ACGGC	1 cut(s)	481
BciT130I	CCWGG	3 cut(s)	75, 548, 656
BcoDI	GTCTC	2 cut(s)	276, 295
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	56
BfrI	CTTAAG	1 cut(s)	277
BfuAI	ACCTGC	1 cut(s)	175
BisI	GCNGC	4 cut(s)	351, 354, 523, 571
BlsI	GCNGC	4 cut(s)	352, 355, 524, 572
Bme1390I	CCNGG	3 cut(s)	75, 548, 656
BmgT120I	GGNCC	1 cut(s)	568
BmrFI	CCNGG	3 cut(s)	75, 548, 656
BmrI	ACTGGG	1 cut(s)	24
BmsI	GCATC	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	24
BoxI	GACNNNNGTC	1 cut(s)	605
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	4 cut(s)	74, 179, 207, 293
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
Bse1I	ACTGG	3 cut(s)	19, 193, 536
BseBI	CCWGG	3 cut(s)	75, 548, 656
BseDI	CCNNGG	4 cut(s)	74, 179, 207, 293
BseGI	GGATG	3 cut(s)	13, 67, 435
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	3 cut(s)	19, 193, 536
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	3 cut(s)	362, 365, 509
Bsh1236I	CGCG	1 cut(s)	25
BshFI	GGCC	1 cut(s)	570
BsiHKAI	GWGCWC	2 cut(s)	84, 555
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	2 cut(s)	276, 295
BsmBI	CGTCTC	1 cut(s)	276
BsnI	GGCC	1 cut(s)	570
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	4 cut(s)	21, 84, 237, 555
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	5, 571
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	25
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	295
BsrI	ACTGG	3 cut(s)	19, 193, 536
BssECI	CCNNGG	4 cut(s)	74, 179, 207, 293
BssMI	GATC	1 cut(s)	46
BssNAI	GTATAC	1 cut(s)	442
BssT1I	CCWWGG	2 cut(s)	179, 293
Bst1107I	GTATAC	1 cut(s)	442
Bst2UI	CCWGG	3 cut(s)	75, 548, 656
Bst4CI	ACNGT	1 cut(s)	604
BstAFI	CTTAAG	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	639, 699
BstDEI	CTNAG	1 cut(s)	105
BstF5I	GGATG	3 cut(s)	13, 67, 435
BstFNI	CGCG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	2 cut(s)	276, 295
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 88, 350, 359
BstNI	CCWGG	3 cut(s)	75, 548, 656
BstPAI	GACNNNNGTC	1 cut(s)	605
BstSCI	CCNGG	3 cut(s)	73, 546, 654
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	3 cut(s)	362, 365, 509
BstZ17I	GTATAC	1 cut(s)	442
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	13, 67, 435
BtsI	GCAGTG	1 cut(s)	517
BtsIMutI	CAGTG	2 cut(s)	517, 529
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	639, 699
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	1 cut(s)	568
CviAII	CATG	4 cut(s)	246, 306, 317, 340
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	179, 293
Eco24I	GRGCYC	2 cut(s)	84, 237
Eco31I	GGTCTC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	506
EcoICRI	GAGCTC	1 cut(s)	82
EcoRII	CCWGG	3 cut(s)	73, 546, 654
EcoRV	GATATC	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	179, 293
EcoT22I	ATGCAT	1 cut(s)	311
EcoT38I	GRGCYC	2 cut(s)	84, 237
ErhI	CCWWGG	2 cut(s)	179, 293
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	4 cut(s)	249, 309, 320, 343
FatI	CATG	4 cut(s)	245, 305, 316, 339
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	351, 354, 523, 571
FokI	GGATG	3 cut(s)	20, 74, 442
FriOI	GRGCYC	2 cut(s)	84, 237
Fsp4HI	GCNGC	4 cut(s)	351, 354, 523, 571
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	4 cut(s)	351, 354, 523, 571
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	570
HhaI	GCGC	1 cut(s)	55
Hin1II	CATG	4 cut(s)	249, 309, 320, 343
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HincII	GTYRAC	2 cut(s)	379, 610
HindII	GTYRAC	2 cut(s)	379, 610
HindIII	AAGCTT	1 cut(s)	274
HinfI	GANTC	1 cut(s)	659
Hpy166II	GTNNAC	5 cut(s)	118, 137, 379, 442, 610
Hpy188I	TCNGA	2 cut(s)	486, 580
Hpy8I	GTNNAC	5 cut(s)	118, 137, 379, 442, 610
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	2 cut(s)	326, 559
HpyCH4III	ACNGT	1 cut(s)	604
HpyCH4V	TGCA	4 cut(s)	170, 309, 362, 697
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 88, 350, 359
HpyF3I	CTNAG	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	249, 309, 320, 343
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	2 cut(s)	79, 550
Lsp1109I	GCAGC	3 cut(s)	362, 365, 509
LweI	GCATC	1 cut(s)	582
MaeIII	GTNAC	2 cut(s)	125, 500
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	358, 499
MhlI	GDGCHC	4 cut(s)	21, 84, 237, 555
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	5 cut(s)	114, 202, 400, 555, 624
Mph1103I	ATGCAT	1 cut(s)	311
MseI	TTAA	2 cut(s)	69, 278
MslI	CAYNNNNRTG	1 cut(s)	534
MspCI	CTTAAG	1 cut(s)	277
MspR9I	CCNGG	3 cut(s)	75, 548, 656
MvaI	CCWGG	3 cut(s)	75, 548, 656
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	4 cut(s)	79, 88, 350, 359
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	249, 309, 320, 343
NmeAIII	GCCGAG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	311
OliI	CACNNNNGTG	1 cut(s)	534
PaqCI	CACCTGC	1 cut(s)	175
PkrI	GCNGC	4 cut(s)	352, 355, 524, 572
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PshAI	GACNNNNGTC	1 cut(s)	605
Psp124BI	GAGCTC	1 cut(s)	84
Psp6I	CCWGG	3 cut(s)	73, 546, 654
PspGI	CCWGG	3 cut(s)	73, 546, 654
PspPI	GGNCC	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	172
PstNI	CAGNNNCTG	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	84
SaqAI	TTAA	2 cut(s)	69, 278
SatI	GCNGC	4 cut(s)	351, 354, 523, 571
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	3 cut(s)	75, 548, 656
SduI	GDGCHC	4 cut(s)	21, 84, 237, 555
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	534
SmlI	CTYRAG	1 cut(s)	277
SmoI	CTYRAG	1 cut(s)	277
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	5, 571
SstI	GAGCTC	1 cut(s)	84
StyD4I	CCNGG	3 cut(s)	73, 546, 654
StyI	CCWWGG	2 cut(s)	179, 293
TaaI	ACNGT	1 cut(s)	604
TaqI	TCGA	1 cut(s)	96
TasI	AATT	1 cut(s)	192
TauI	GCSGC	1 cut(s)	573
Tru1I	TTAA	2 cut(s)	69, 278
Tru9I	TTAA	2 cut(s)	69, 278
TscAI	CASTG	2 cut(s)	524, 536
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	3 cut(s)	350, 353, 522
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	189, 647
TspRI	CASTG	2 cut(s)	524, 536
Vha464I	CTTAAG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	192
XmiI	GTMKAC	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.