Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Reverse (-)

21359001 .. 21362273

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G52660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTCTCTAGAAATTCTGACGGATATTTCTTGGATCCGACCGGTATGACTGTTCCTGGTCTCGGACCTTCCTTTACAGCCGCCGTTTCTTCTTCTTCTTCACCAACGACTTCTTCTACGGCCGTGGCTGTGGCGGATGTGACGGCGATGGTTTCTTCTTCGGAGGAGGATTTGAGTAAGAAGATTAGGAAGCCTTATACTATTACTAAGTCTAGAGAGAGCTGGACGGAGCCTGAGCATGATAAATTCCTTGAAGCTCTTCAATTGTTTGATAGAGACTGGAAGAAGATTGAAGCTTTTATTGGTTCAAAGACAGTGATTCAGATACGAAGTCATGCTCAGAAGTATTTTCTTAAGGTACAAAAGAGTGGGACCGGTGAACATCTCCCTCCTCCTCGACCTAAAAGGAAAGCCGCTCATCCATATCCTCAGAAGGCTCACAAGAATGTGCAACTGCAAGTACCAGGGTCATTCAAGTCAACATCTGAACCAAATGACCCAAGTTTTATGTTTAGGCCTGAGTCTTCTTCAATGCTGATGACTTCGCCAACCACTGCTGCTGCGGCTCCATGGACAAATAATGCGCAAACAATTAGCTTCACTCCCCTCCCAAAAGGAGCAGGAGCTAATAACAATTGTTCTAGTAGTTCTGAAAATACTCCAAGACCACGATCCAACAGGGACGCAAGAGACCATGGAAATGTTGGCCATTCATTAAGAGTTTTACCGGACTTTGCCCAAGTATACGGCTTCATTGGAAGTGTGTTTGACCCATATGCAAGTAATCATCTACAAAAGCTGAAGAAGATGGACCCCATAGATGTTGAAACAGTGTTACTATTGATGAGAAATCTATCCATCAACTTGTCTAGTCCTGACTTTGAGGATCATAGACGGCTTCTTTCGTCTTATGATATCGGATCTGAGACAGCAACTGATCATGGTGGAGTGAATAAAACCTTAAACAAAGACCCACCTGAAATCTCTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

330

Amino Acids

36.19

Weight (kDa)

8.98

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	72 - 117	1.5e-10	Myb-like DNA-binding domain
RVE6	PF24904	243 - 305	6.6e-38	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	585
AccBSI	CCGCTC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	744
AciI	CCGC	4 cut(s)	81, 134, 414, 563
AclWI	GGATC	5 cut(s)	29, 42, 666, 894, 928
AcoI	YGGCCR	2 cut(s)	120, 706
AcsI	RAATTY	2 cut(s)	13, 245
AcuI	CTGAAG	1 cut(s)	821
AfaI	GTAC	2 cut(s)	360, 462
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	353
AgeI	ACCGGT	2 cut(s)	41, 374
AgsI	TTSAA	7 cut(s)	254, 263, 293, 309, 475, 531, 827
AjnI	CCWGG	2 cut(s)	55, 463
AjuI	GAANNNNNNNTTGG	4 cut(s)	97, 129, 285, 317
AluBI	AGCT	6 cut(s)	222, 257, 296, 597, 626, 799
AluI	AGCT	6 cut(s)	222, 257, 296, 597, 626, 799
Alw26I	GTCTC	5 cut(s)	10, 65, 270, 684, 920
AlwI	GGATC	5 cut(s)	29, 42, 666, 894, 928
AlwNI	CAGNNNCTG	1 cut(s)	935
AoxI	GGCC	3 cut(s)	120, 515, 706
ApeKI	GCWGC	2 cut(s)	557, 560
ApoI	RAATTY	2 cut(s)	13, 245
AsiGI	ACCGGT	2 cut(s)	41, 374
Asp700I	GAANNNNTTC	1 cut(s)	258
AspLEI	GCGC	1 cut(s)	586
AspS9I	GGNCC	3 cut(s)	65, 372, 811
AsuHPI	GGTGA	2 cut(s)	93, 389
AvaII	GGWCC	3 cut(s)	65, 372, 811
BalI	TGGCCA	1 cut(s)	708
BamHI	GGATCC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	544, 547
BccI	CCATC	3 cut(s)	142, 802, 866
BceAI	ACGGC	6 cut(s)	68, 107, 135, 159, 763, 911
BciT130I	CCWGG	2 cut(s)	57, 465
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	5 cut(s)	10, 65, 270, 684, 920
BfaI	CTAG	4 cut(s)	9, 213, 642, 870
BfrI	CTTAAG	1 cut(s)	353
BisI	GCNGC	5 cut(s)	81, 414, 558, 561, 564
BlsI	GCNGC	5 cut(s)	82, 415, 559, 562, 565
Bme1390I	CCNGG	2 cut(s)	57, 465
Bme18I	GGWCC	3 cut(s)	65, 372, 811
BmgT120I	GGNCC	3 cut(s)	65, 372, 811
BmiI	GGNNCC	5 cut(s)	36, 231, 373, 567, 813
BmrFI	CCNGG	2 cut(s)	57, 465
BpiI	GAAGAC	1 cut(s)	516
Bpu10I	CCTNAGC	1 cut(s)	234
BsaI	GGTCTC	3 cut(s)	10, 65, 684
BsaJI	CCNNGG	4 cut(s)	123, 464, 569, 694
BsaWI	WCCGGW	3 cut(s)	41, 374, 727
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	2 cut(s)	41, 374
Bse1I	ACTGG	1 cut(s)	284
BseBI	CCWGG	2 cut(s)	57, 465
BseDI	CCNNGG	4 cut(s)	123, 464, 569, 694
BseGI	GGATG	2 cut(s)	142, 418
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	5 cut(s)	225, 353, 443, 510, 915
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	3 cut(s)	179, 381, 384
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	544, 547
Bsh1285I	CGRYCG	2 cut(s)	42, 123
BshFI	GGCC	3 cut(s)	122, 517, 708
BshTI	ACCGGT	2 cut(s)	41, 374
BsiEI	CGRYCG	2 cut(s)	42, 123
BsiSI	CCGG	3 cut(s)	42, 375, 728
BslFI	GGGAC	2 cut(s)	385, 695
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	5 cut(s)	10, 65, 270, 684, 920
BsmFI	GGGAC	2 cut(s)	385, 695
BsnI	GGCC	3 cut(s)	122, 517, 708
Bso31I	GGTCTC	3 cut(s)	10, 65, 684
Bsp143I	GATC	5 cut(s)	34, 671, 886, 920, 937
Bsp19I	CCATGG	2 cut(s)	569, 694
BspACI	CCGC	4 cut(s)	81, 134, 414, 563
BspANI	GGCC	3 cut(s)	122, 517, 708
BspCNI	CTCAG	5 cut(s)	226, 352, 442, 511, 916
BspLI	GGNNCC	5 cut(s)	36, 231, 373, 567, 813
BspPI	GGATC	5 cut(s)	29, 42, 666, 894, 928
BspQI	GCTCTTC	1 cut(s)	264
BspTI	CTTAAG	1 cut(s)	353
BspTNI	GGTCTC	3 cut(s)	10, 65, 684
BsrBI	CCGCTC	1 cut(s)	416
BsrFI	RCCGGY	2 cut(s)	41, 374
BsrI	ACTGG	1 cut(s)	284
BssAI	RCCGGY	2 cut(s)	41, 374
BssECI	CCNNGG	4 cut(s)	123, 464, 569, 694
BssMI	GATC	5 cut(s)	34, 671, 886, 920, 937
BssNAI	GTATAC	1 cut(s)	745
BssT1I	CCWWGG	2 cut(s)	569, 694
Bst1107I	GTATAC	1 cut(s)	745
Bst2UI	CCWGG	2 cut(s)	57, 465
Bst4CI	ACNGT	3 cut(s)	52, 316, 832
Bst6I	CTCTTC	1 cut(s)	264
BstAFI	CTTAAG	1 cut(s)	353
BstDEI	CTNAG	6 cut(s)	207, 234, 339, 429, 519, 924
BstDSI	CCRYGG	3 cut(s)	123, 569, 694
BstF5I	GGATG	2 cut(s)	142, 418
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	5 cut(s)	37, 674, 889, 923, 940
BstMAI	GTCTC	5 cut(s)	10, 65, 270, 684, 920
BstMBI	GATC	5 cut(s)	34, 671, 886, 920, 937
BstMCI	CGRYCG	2 cut(s)	42, 123
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	2 cut(s)	57, 465
BstSCI	CCNGG	2 cut(s)	55, 463
BstV1I	GCAGC	2 cut(s)	544, 547
BstV2I	GAAGAC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	34, 920
BstYI	RGATCY	2 cut(s)	34, 920
BstZ17I	GTATAC	1 cut(s)	745
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	3 cut(s)	122, 517, 708
BtgI	CCRYGG	3 cut(s)	123, 569, 694
BtgZI	GCGATG	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	142, 418
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	3 cut(s)	321, 552, 837
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	1 cut(s)	586
Cfr10I	RCCGGY	2 cut(s)	41, 374
Cfr13I	GGNCC	3 cut(s)	65, 372, 811
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	359, 461
CspAI	ACCGGT	2 cut(s)	41, 374
CviAII	CATG	5 cut(s)	239, 335, 570, 695, 941
CviQI	GTAC	2 cut(s)	359, 461
DdeI	CTNAG	6 cut(s)	207, 234, 339, 429, 519, 924
DpnI	GATC	5 cut(s)	36, 673, 888, 922, 939
DpnII	GATC	5 cut(s)	34, 671, 886, 920, 937
EaeI	YGGCCR	2 cut(s)	120, 706
EagI	CGGCCG	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	149
EclXI	CGGCCG	1 cut(s)	120
Eco130I	CCWWGG	2 cut(s)	569, 694
Eco147I	AGGCCT	1 cut(s)	517
Eco31I	GGTCTC	3 cut(s)	10, 65, 684
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	3 cut(s)	65, 372, 811
Eco52I	CGGCCG	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	821
EcoRII	CCWGG	2 cut(s)	55, 463
EcoRV	GATATC	1 cut(s)	916
EcoT14I	CCWWGG	2 cut(s)	569, 694
ErhI	CCWWGG	2 cut(s)	569, 694
FaeI	CATG	5 cut(s)	242, 338, 573, 698, 944
FaqI	GGGAC	2 cut(s)	385, 695
FatI	CATG	5 cut(s)	238, 334, 569, 694, 940
FauNDI	CATATG	1 cut(s)	775
FbaI	TGATCA	1 cut(s)	937
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	5 cut(s)	81, 414, 558, 561, 564
FokI	GGATG	2 cut(s)	149, 405
Fsp4HI	GCNGC	5 cut(s)	81, 414, 558, 561, 564
FspBI	CTAG	4 cut(s)	9, 213, 642, 870
FspI	TGCGCA	1 cut(s)	585
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	5 cut(s)	81, 414, 558, 561, 564
HaeIII	GGCC	3 cut(s)	122, 517, 708
HapII	CCGG	3 cut(s)	42, 375, 728
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	5 cut(s)	242, 338, 573, 698, 944
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HincII	GTYRAC	1 cut(s)	480
HindII	GTYRAC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	319, 521
HpaII	CCGG	3 cut(s)	42, 375, 728
HphI	GGTGA	2 cut(s)	93, 389
Hpy166II	GTNNAC	3 cut(s)	380, 480, 745
Hpy188III	TCNNGA	3 cut(s)	9, 213, 875
Hpy8I	GTNNAC	3 cut(s)	380, 480, 745
HpyAV	CCTTC	2 cut(s)	78, 427
HpyCH4III	ACNGT	3 cut(s)	52, 316, 832
HpyCH4V	TGCA	3 cut(s)	451, 457, 779
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	6 cut(s)	207, 234, 339, 429, 519, 924
Hsp92II	CATG	5 cut(s)	242, 338, 573, 698, 944
HspAI	GCGC	1 cut(s)	584
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	5 cut(s)	34, 671, 886, 920, 937
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	4 cut(s)	229, 571, 617, 623
Lsp1109I	GCAGC	2 cut(s)	544, 547
MaeI	CTAG	4 cut(s)	9, 213, 642, 870
MaeIII	GTNAC	2 cut(s)	139, 834
MalI	GATC	5 cut(s)	36, 673, 888, 922, 939
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	5 cut(s)	34, 671, 886, 920, 937
MfeI	CAATTG	2 cut(s)	263, 634
MflI	RGATCY	2 cut(s)	34, 920
MlsI	TGGCCA	1 cut(s)	708
MluCI	AATT	5 cut(s)	13, 245, 263, 591, 634
MluNI	TGGCCA	1 cut(s)	708
MlyI	GAGTC	1 cut(s)	530
MmeI	TCCRAC	2 cut(s)	62, 699
MnlI	CCTC	8 cut(s)	157, 160, 399, 402, 405, 438, 617, 877
Mox20I	TGGCCA	1 cut(s)	708
MroXI	GAANNNNTTC	1 cut(s)	258
MscI	TGGCCA	1 cut(s)	708
MseI	TTAA	4 cut(s)	354, 716, 962, 991
MslI	CAYNNNNRTG	2 cut(s)	444, 699
Msp20I	TGGCCA	1 cut(s)	708
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	3 cut(s)	42, 375, 728
MspR9I	CCNGG	2 cut(s)	57, 465
MunI	CAATTG	2 cut(s)	263, 634
MvaI	CCWGG	2 cut(s)	57, 465
MwoI	GCNNNNNNNGC	1 cut(s)	563
NcoI	CCATGG	2 cut(s)	569, 694
NdeI	CATATG	1 cut(s)	775
NdeII	GATC	5 cut(s)	34, 671, 886, 920, 937
NlaIII	CATG	5 cut(s)	242, 338, 573, 698, 944
NlaIV	GGNNCC	5 cut(s)	36, 231, 373, 567, 813
NmuCI	GTSAC	1 cut(s)	139
NsbI	TGCGCA	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	517
PciSI	GCTCTTC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	319
PinAI	ACCGGT	2 cut(s)	41, 374
PkrI	GCNGC	5 cut(s)	82, 415, 559, 562, 565
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Psp6I	CCWGG	2 cut(s)	55, 463
PspGI	CCWGG	2 cut(s)	55, 463
PspN4I	GGNNCC	5 cut(s)	36, 231, 373, 567, 813
PspPI	GGNCC	3 cut(s)	65, 372, 811
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	2 cut(s)	34, 920
RsaI	GTAC	2 cut(s)	360, 462
RsaNI	GTAC	2 cut(s)	359, 461
RseI	CAYNNNNRTG	2 cut(s)	444, 699
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	4 cut(s)	354, 716, 962, 991
SatI	GCNGC	5 cut(s)	81, 414, 558, 561, 564
Sau3AI	GATC	5 cut(s)	34, 671, 886, 920, 937
Sau96I	GGNCC	3 cut(s)	65, 372, 811
SchI	GAGTC	1 cut(s)	530
ScrFI	CCNGG	2 cut(s)	57, 465
SinI	GGWCC	3 cut(s)	65, 372, 811
SmiMI	CAYNNNNRTG	2 cut(s)	444, 699
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	5 cut(s)	13, 245, 263, 591, 634
SseBI	AGGCCT	1 cut(s)	517
SsiI	CCGC	4 cut(s)	81, 134, 414, 563
SspMI	CTAG	4 cut(s)	9, 213, 642, 870
StuI	AGGCCT	1 cut(s)	517
StyD4I	CCNGG	2 cut(s)	55, 463
StyI	CCWWGG	2 cut(s)	569, 694
TaaI	ACNGT	3 cut(s)	52, 316, 832
TaqI	TCGA	1 cut(s)	397
TasI	AATT	5 cut(s)	13, 245, 263, 591, 634
TauI	GCSGC	3 cut(s)	83, 416, 566
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	4 cut(s)	354, 716, 962, 991
Tru9I	TTAA	4 cut(s)	354, 716, 962, 991
TscAI	CASTG	3 cut(s)	321, 559, 837
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	2 cut(s)	557, 560
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	2 cut(s)	702, 742
TspGWI	ACGGA	2 cut(s)	36, 242
TspRI	CASTG	3 cut(s)	321, 559, 837
Vha464I	CTTAAG	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	65, 372, 811
XapI	RAATTY	2 cut(s)	13, 245
XbaI	TCTAGA	2 cut(s)	8, 212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	258
XspI	CTAG	4 cut(s)	9, 213, 642, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.