Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Reverse (-)

28936202 .. 28939579

Gene Structure 3378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G301500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTATCCAAAAACCCGAATCCACCAGAGGGCTTGTACTTGGATCCGAGCGGAATGGCGTTACCCGGGCTCGGGCCATTCGCCTCAGTCACTACCTCAGCGACGACGACGTCAACGACGTCTTCTTCGGAGGATCTGAGTAAGAAGATTCGGAAGCCCTACACTATCACCAAGTCCAGAGAGAGCTGGAGCGAACCCGAGCACGACAAGTTCCTCGAAGCCCTCCAGCTCTTTGACCGTGATTGGAAAAAGATTGAAGCATTCATTGGGTCGAAGACAGTTATACAGATACGTAGTCATGCACAGAAGTATTTTCTGAAGGTTCAAAAGAATGGGACAAGCGAACATCTACCTCCCCCTAGGCCAAAAAGGAAAGCTGCTCACCCATATCCTCAAAAAGCTTCTAAAAATGCTCTGGCGCTTCCACAAGTGTCTGGGTCATGTCAGTCTTCATCTGCTTTACATGAATCTGGGTTTATTCAAAGGCCAGATTCAGCGTCAATGCTTATGAGTCCCGTTCCTGGCACTGTAGTCCCTTCCTGGACTGATGGTTCCATGCAAACAGCCAACCTATCACATGAGTCCAAAGGGCCAACTGCGCCGAATAACAGTTGCAGTAGCACAGAAAGCACTCCAAAAGCTCAACCAGTTGGTGGAACAGCTGATCTAGTGATTCCTAGCCATGCATTGAGAGTTCTTCCTGACTTTTCTCAAGTATACAGCTTCATCGGCAGTGTCTTTGACCCTAATGTTACAGGTCATCTGCAGAAATTGAAGAAGATGGATCCTATAGATGTTGACACGGTGTTACTGTTGATGAGAAATCTGTCCATCAATTTGAGCAGTCCTGATTTTGAGGATCATAGAAAGCTGCTTTCATCCTACAAAATAGACGCAGATACTGCGAGTCATGGTGATGCAACTAAAAGCCTTTGTGACGATCAACACAAGAAAGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

321

Amino Acids

34.78

Weight (kDa)

8.79

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AatII	GACGTC	2 cut(s)	113, 122
AccB7I	CCANNNNNTGG	1 cut(s)	653
AccBSI	CCGCTC	1 cut(s)	51
AccI	GTMKAC	1 cut(s)	717
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	6 cut(s)	38, 51, 141, 779, 792, 867
AcuI	CTGAAG	1 cut(s)	338
AcyI	GRCGYC	2 cut(s)	110, 119
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	5 cut(s)	29, 71, 72, 521, 653
AgsI	TTSAA	4 cut(s)	257, 326, 482, 775
AjnI	CCWGG	2 cut(s)	520, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AloI	GAACNNNNNNTCC	2 cut(s)	535, 567
AluBI	AGCT	8 cut(s)	186, 229, 377, 401, 641, 662, 723, 871
AluI	AGCT	8 cut(s)	186, 229, 377, 401, 641, 662, 723, 871
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	6 cut(s)	38, 51, 141, 779, 792, 867
AlwNI	CAGNNNCTG	1 cut(s)	902
Ama87I	CYCGRG	3 cut(s)	65, 71, 197
AoxI	GGCC	4 cut(s)	74, 362, 485, 590
ApeKI	GCWGC	2 cut(s)	377, 871
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AspA2I	CCTAGG	1 cut(s)	359
AspLEI	GCGC	2 cut(s)	421, 601
AspS9I	GGNCC	2 cut(s)	74, 590
AsuC2I	CCSGG	2 cut(s)	66, 67
AsuHPI	GGTGA	3 cut(s)	160, 374, 926
AvaI	CYCGRG	3 cut(s)	65, 71, 197
AvrII	CCTAGG	1 cut(s)	359
BamHI	GGATCC	2 cut(s)	43, 784
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	3 cut(s)	114, 281, 441
Bbv12I	GWGCWC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	364, 858
BccI	CCATC	3 cut(s)	542, 775, 839
BciT130I	CCWGG	2 cut(s)	522, 541
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	2 cut(s)	66, 67
BfaI	CTAG	3 cut(s)	360, 668, 678
BfmI	CTRYAG	3 cut(s)	528, 764, 789
BfoI	RGCGCY	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	378, 872
BlnI	CCTAGG	1 cut(s)	359
BlsI	GCNGC	2 cut(s)	379, 873
Bme1390I	CCNGG	4 cut(s)	66, 67, 522, 541
BmeT110I	CYCGRG	3 cut(s)	65, 71, 197
BmgT120I	GGNCC	2 cut(s)	74, 590
BmiI	GGNNCC	3 cut(s)	45, 553, 786
BmrFI	CCNGG	4 cut(s)	66, 67, 522, 541
BmsI	GCATC	1 cut(s)	907
BpiI	GAAGAC	3 cut(s)	114, 281, 441
BpmI	CTGGAG	2 cut(s)	208, 209
Bpu10I	CCTNAGC	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	696
BpuMI	CCSGG	2 cut(s)	66, 67
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	110, 119
BsaJI	CCNNGG	2 cut(s)	65, 359
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 71, 72, 521, 653
Bse1I	ACTGG	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	522, 541
BseDI	CCNNGG	2 cut(s)	65, 359
BseGI	GGATG	1 cut(s)	878
BseLI	CCNNNNNNNGG	5 cut(s)	29, 71, 72, 521, 653
BseMII	CTCAG	3 cut(s)	99, 111, 128
BseNI	ACTGG	1 cut(s)	647
BseXI	GCAGC	2 cut(s)	364, 858
BshFI	GGCC	4 cut(s)	76, 364, 487, 592
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	3 cut(s)	65, 71, 197
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	3 cut(s)	349, 498, 518
BslI	CCNNNNNNNGG	5 cut(s)	29, 71, 72, 521, 653
BsmFI	GGGAC	3 cut(s)	349, 498, 518
BsmI	GAATGC	1 cut(s)	260
BsnI	GGCC	4 cut(s)	76, 364, 487, 592
BsoBI	CYCGRG	3 cut(s)	65, 71, 197
Bsp1286I	GDGCHC	2 cut(s)	72, 204
Bsp143I	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	4 cut(s)	76, 364, 487, 592
BspCNI	CTCAG	3 cut(s)	98, 110, 129
BspLI	GGNNCC	3 cut(s)	45, 553, 786
BspMAI	CTGCAG	1 cut(s)	768
BspPI	GGATC	6 cut(s)	38, 51, 141, 779, 792, 867
BsrBI	CCGCTC	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	647
BssECI	CCNNGG	2 cut(s)	65, 359
BssMI	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
BssNAI	GTATAC	1 cut(s)	718
BssNI	GRCGYC	2 cut(s)	110, 119
BssT1I	CCWWGG	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	718
Bst2UI	CCWGG	2 cut(s)	522, 541
Bst4CI	ACNGT	6 cut(s)	239, 280, 529, 611, 805, 813
BstACI	GRCGYC	2 cut(s)	110, 119
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstBAI	YACGTR	1 cut(s)	293
BstDEI	CTNAG	3 cut(s)	85, 97, 137
BstF5I	GGATG	1 cut(s)	878
BstH2I	RGCGCY	1 cut(s)	422
BstHHI	GCGC	2 cut(s)	421, 601
BstKTI	GATC	6 cut(s)	46, 136, 667, 787, 862, 943
BstMBI	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
BstMWI	GCNNNNNNNGC	4 cut(s)	598, 627, 729, 902
BstNI	CCWGG	2 cut(s)	522, 541
BstSCI	CCNGG	4 cut(s)	64, 65, 520, 539
BstSFI	CTRYAG	3 cut(s)	528, 764, 789
BstSNI	TACGTA	1 cut(s)	293
BstV1I	GCAGC	2 cut(s)	364, 858
BstV2I	GAAGAC	3 cut(s)	114, 281, 441
BstX2I	RGATCY	3 cut(s)	43, 133, 784
BstYI	RGATCY	3 cut(s)	43, 133, 784
BstZ17I	GTATAC	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	4 cut(s)	76, 364, 487, 592
BtsCI	GGATG	1 cut(s)	878
BtsI	GCAGTG	1 cut(s)	739
BtsIMutI	CAGTG	2 cut(s)	525, 739
CaiI	CAGNNNCTG	1 cut(s)	902
CfoI	GCGC	2 cut(s)	421, 601
Cfr13I	GGNCC	2 cut(s)	74, 590
Cfr9I	CCCGGG	1 cut(s)	65
CseI	GACGC	2 cut(s)	486, 902
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	7 cut(s)	299, 441, 464, 556, 578, 683, 911
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	85, 97, 137
DpnI	GATC	6 cut(s)	45, 135, 666, 786, 861, 942
DpnII	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
Eco105I	TACGTA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	338
Eco88I	CYCGRG	3 cut(s)	65, 71, 197
EcoRII	CCWGG	2 cut(s)	520, 539
EcoT14I	CCWWGG	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	7 cut(s)	302, 444, 467, 559, 581, 686, 914
FaqI	GGGAC	3 cut(s)	349, 498, 518
FatI	CATG	7 cut(s)	298, 440, 463, 555, 577, 682, 910
FblI	GTMKAC	1 cut(s)	717
Fnu4HI	GCNGC	2 cut(s)	378, 872
FokI	GGATG	1 cut(s)	865
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	378, 872
FspBI	CTAG	3 cut(s)	360, 668, 678
GlaI	GCGC	2 cut(s)	420, 600
GluI	GCNGC	2 cut(s)	378, 872
GsuI	CTGGAG	2 cut(s)	208, 209
HaeII	RGCGCY	1 cut(s)	422
HaeIII	GGCC	4 cut(s)	76, 364, 487, 592
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	2 cut(s)	486, 902
HhaI	GCGC	2 cut(s)	421, 601
Hin1I	GRCGYC	2 cut(s)	110, 119
Hin1II	CATG	7 cut(s)	302, 444, 467, 559, 581, 686, 914
Hin6I	GCGC	2 cut(s)	419, 599
HinP1I	GCGC	2 cut(s)	419, 599
HincII	GTYRAC	2 cut(s)	114, 799
HindII	GTYRAC	2 cut(s)	114, 799
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	8 cut(s)	19, 148, 467, 491, 511, 581, 673, 907
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	3 cut(s)	160, 374, 926
Hpy166II	GTNNAC	3 cut(s)	114, 718, 799
Hpy188I	TCNGA	5 cut(s)	48, 130, 138, 153, 318
Hpy188III	TCNNGA	3 cut(s)	177, 701, 848
Hpy8I	GTNNAC	3 cut(s)	114, 718, 799
Hpy99I	CGWCG	4 cut(s)	106, 109, 112, 121
HpyAV	CCTTC	2 cut(s)	313, 546
HpyCH4III	ACNGT	6 cut(s)	239, 280, 529, 611, 805, 813
HpyCH4IV	ACGT	3 cut(s)	110, 119, 292
HpyCH4V	TGCA	6 cut(s)	302, 559, 615, 686, 766, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	598, 627, 729, 902
HpyF3I	CTNAG	3 cut(s)	85, 97, 137
HpySE526I	ACGT	3 cut(s)	110, 119, 292
Hsp92I	GRCGYC	2 cut(s)	110, 119
Hsp92II	CATG	7 cut(s)	302, 444, 467, 559, 581, 686, 914
HspAI	GCGC	2 cut(s)	419, 599
Kzo9I	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	2 cut(s)	364, 858
LweI	GCATC	1 cut(s)	907
MaeI	CTAG	3 cut(s)	360, 668, 678
MaeII	ACGT	3 cut(s)	110, 119, 292
MaeIII	GTNAC	5 cut(s)	60, 88, 751, 807, 935
MalI	GATC	6 cut(s)	45, 135, 666, 786, 861, 942
MbiI	CCGCTC	1 cut(s)	51
MboI	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
MboII	GAAGA	8 cut(s)	114, 117, 157, 286, 441, 689, 787, 790
MflI	RGATCY	3 cut(s)	43, 133, 784
MhlI	GDGCHC	2 cut(s)	72, 204
MluCI	AATT	2 cut(s)	770, 835
MlyI	GAGTC	3 cut(s)	520, 590, 916
MnlI	CCTC	9 cut(s)	22, 94, 106, 124, 224, 233, 363, 402, 850
Mph1103I	ATGCAT	1 cut(s)	688
MseI	TTAA	1 cut(s)	961
MslI	CAYNNNNRTG	1 cut(s)	915
MspA1I	CMGCKG	1 cut(s)	662
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	4 cut(s)	66, 67, 522, 541
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	2 cut(s)	522, 541
MwoI	GCNNNNNNNGC	4 cut(s)	598, 627, 729, 902
NciI	CCSGG	2 cut(s)	66, 67
NdeII	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
NlaIII	CATG	7 cut(s)	302, 444, 467, 559, 581, 686, 914
NlaIV	GGNNCC	3 cut(s)	45, 553, 786
NmuCI	GTSAC	2 cut(s)	88, 935
NsiI	ATGCAT	1 cut(s)	688
PcsI	WCGNNNNNNNCGW	2 cut(s)	113, 116
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	5 cut(s)	19, 148, 467, 491, 673
PflFI	GACNNNGTC	1 cut(s)	109
PflMI	CCANNNNNTGG	1 cut(s)	653
PfoI	TCCNGGA	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	379, 873
PleI	GAGTC	3 cut(s)	519, 589, 915
PpsI	GAGTC	3 cut(s)	519, 589, 915
Ppu21I	YACGTR	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	520, 539
PspGI	CCWGG	2 cut(s)	520, 539
PspN4I	GGNNCC	3 cut(s)	45, 553, 786
PspPI	GGNCC	2 cut(s)	74, 590
PstI	CTGCAG	1 cut(s)	768
PstNI	CAGNNNCTG	1 cut(s)	902
PsuI	RGATCY	3 cut(s)	43, 133, 784
PsyI	GACNNNGTC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	662
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	915
SaqAI	TTAA	1 cut(s)	961
SatI	GCNGC	2 cut(s)	378, 872
Sau3AI	GATC	6 cut(s)	43, 133, 664, 784, 859, 940
Sau96I	GGNCC	2 cut(s)	74, 590
SchI	GAGTC	3 cut(s)	520, 590, 916
ScrFI	CCNGG	4 cut(s)	66, 67, 522, 541
SduI	GDGCHC	2 cut(s)	72, 204
SfaNI	GCATC	1 cut(s)	907
SfcI	CTRYAG	3 cut(s)	528, 764, 789
SmaI	CCCGGG	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	1 cut(s)	711
SmoI	CTYRAG	1 cut(s)	711
SnaBI	TACGTA	1 cut(s)	293
Sse9I	AATT	2 cut(s)	770, 835
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	3 cut(s)	360, 668, 678
StyD4I	CCNGG	4 cut(s)	64, 65, 520, 539
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	6 cut(s)	239, 280, 529, 611, 805, 813
TaiI	ACGT	3 cut(s)	113, 122, 295
TaqI	TCGA	2 cut(s)	216, 272
TasI	AATT	2 cut(s)	770, 835
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	5 cut(s)	19, 148, 467, 491, 673
Tru1I	TTAA	1 cut(s)	961
Tru9I	TTAA	1 cut(s)	961
TscAI	CASTG	2 cut(s)	532, 739
TseFI	GTSAC	2 cut(s)	88, 935
TseI	GCWGC	2 cut(s)	377, 871
Tsp45I	GTSAC	2 cut(s)	88, 935
TspDTI	ATGAA	5 cut(s)	253, 441, 480, 715, 867
TspMI	CCCGGG	1 cut(s)	65
TspRI	CASTG	2 cut(s)	532, 739
Tth111I	GACNNNGTC	1 cut(s)	109
Van91I	CCANNNNNTGG	1 cut(s)	653
XmaI	CCCGGG	1 cut(s)	65
XmaJI	CCTAGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	717
XspI	CTAG	3 cut(s)	360, 668, 678
ZraI	GACGTC	2 cut(s)	111, 120
Zsp2I	ATGCAT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.