Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Reverse (-)

34370265 .. 34374114

Gene Structure 3850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1279300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTATCCAAAAACCCGAACCCGCCAGAGGGCTTGTACTTGGATCCGAACGAAAGCGGCATGCCGTTGCCCGGACTCGGGCCGTTCGCCTCGGCCACTGCGACGACGTCAACGACTTCGTCTTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCCTACACAATTACCAAGTCCAGAGAGAGCTGGAGTGAGCCGGAGCACGACAAGTTCCTCGAAGCCCTCCAACTCTTCGATCGCGATTGGAAAAAGATTGAAGCTTTCATTGGGTCAAAGACGGTCATACAGATACGTAGTCATGCACAGAAGTATTTTCTGAAGGTTCAAAAGAATGGGACGAGCGAGCATCTACCTCCCCCTAGGCCAAAAAGGAAAGCTGCTCACCCATATCCTCAAAAAGCTTCAAAAAATGCTCTGGCACTTCCGCCAGTATCTTGGTCATGTCAGTCTTCATCTGCTTTACTTGAATCTGGGTTTAATCAAAGGCCAGATTCATCATCAATGCTTATGAGTCCTATCCCTGGCCCTGTAGCCCCTTCCTGGCCTAATGGTTCTGTGCAAACAGCCAATCCATCTCATGAGTCCAAAGTTGTTTCAGGGCCAACTGTGCTGAACAACAGTTGCAGTACCACAGAAAGCACCCCTAAAGCTCAACCAGTTGGTGGAACAACTGATCAAGTGAACCATAGCCATGCATTGAGAGTTCTTCCCGACTTTACTCAAGTATACGGATTCATTGGCAGCGTCTTTGACCCTAATGTTACAGGTCATCTTCAGAATCTGAAGAAGATGGATCCGATAGATGTTGAAACGGTGTTACTGTTGATGAGAAACCTGTCCATGAATTTGACCAATCCCGAATTCGAGGATCATAGACAGTTGCTTTCATCCTACAAGATGGACGCGAATACAGGGAATCTCAGTGATGCAACTAAAACCCTTTGCGACGATCAACATGAGAAAGTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

324

Amino Acids

35.39

Weight (kDa)

7.75

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	60 - 105	3.3e-10	Myb-like DNA-binding domain
RVE6	PF24904	236 - 298	2.2e-36	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	662
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	2 cut(s)	240, 905
AciI	CCGC	4 cut(s)	23, 57, 128, 425
AclWI	GGATC	6 cut(s)	38, 51, 141, 788, 801, 876
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	844, 860
AcuI	CTGAAG	3 cut(s)	338, 758, 803
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	2 cut(s)	38, 628
AfiI	CCNNNNNNNGG	8 cut(s)	28, 29, 71, 77, 78, 521, 540, 662
AgsI	TTSAA	5 cut(s)	257, 326, 405, 467, 809
AjnI	CCWGG	2 cut(s)	520, 539
AjuI	GAANNNNNNNTTGG	4 cut(s)	249, 281, 845, 877
AluBI	AGCT	5 cut(s)	186, 260, 377, 401, 650
AluI	AGCT	5 cut(s)	186, 260, 377, 401, 650
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	6 cut(s)	38, 51, 141, 788, 801, 876
AlwNI	CAGNNNCTG	1 cut(s)	781
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	7 cut(s)	80, 93, 362, 485, 523, 542, 599
ApeKI	GCWGC	2 cut(s)	377, 741
ApoI	RAATTY	2 cut(s)	844, 860
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspA2I	CCTAGG	1 cut(s)	359
AspS9I	GGNCC	3 cut(s)	80, 524, 599
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	374
AvaI	CYCGRG	1 cut(s)	77
AvrII	CCTAGG	1 cut(s)	359
BamHI	GGATCC	2 cut(s)	43, 793
BbsI	GAAGAC	2 cut(s)	114, 441
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	364, 753
BccI	CCATC	3 cut(s)	580, 784, 892
BceAI	ACGGC	2 cut(s)	49, 67
BciT130I	CCWGG	2 cut(s)	522, 541
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	673
BcnI	CCSGG	1 cut(s)	72
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	528
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	3 cut(s)	58, 378, 742
BlnI	CCTAGG	1 cut(s)	359
BlsI	GCNGC	3 cut(s)	59, 379, 743
Bme1390I	CCNGG	3 cut(s)	72, 522, 541
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	80, 524, 599
BmiI	GGNNCC	2 cut(s)	45, 795
BmrFI	CCNGG	3 cut(s)	72, 522, 541
BmsI	GCATC	2 cut(s)	355, 916
BpiI	GAAGAC	2 cut(s)	114, 441
BpmI	CTGGAG	1 cut(s)	208
BpuEI	CTTGAG	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	90, 359, 520
Bsc4I	CCNNNNNNNGG	8 cut(s)	28, 29, 71, 77, 78, 521, 540, 662
Bse1I	ACTGG	2 cut(s)	428, 656
BseBI	CCWGG	2 cut(s)	522, 541
BseDI	CCNNGG	3 cut(s)	90, 359, 520
BseGI	GGATG	1 cut(s)	887
BseLI	CCNNNNNNNGG	8 cut(s)	28, 29, 71, 77, 78, 521, 540, 662
BseMII	CTCAG	2 cut(s)	128, 934
BseNI	ACTGG	2 cut(s)	428, 656
BseXI	GCAGC	2 cut(s)	364, 753
Bsh1236I	CGCG	2 cut(s)	240, 905
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	7 cut(s)	82, 95, 364, 487, 525, 544, 601
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	72, 197
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	8 cut(s)	28, 29, 71, 77, 78, 521, 540, 662
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	7 cut(s)	82, 95, 364, 487, 525, 544, 601
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
Bsp68I	TCGCGA	1 cut(s)	240
BspACI	CCGC	4 cut(s)	23, 57, 128, 425
BspANI	GGCC	7 cut(s)	82, 95, 364, 487, 525, 544, 601
BspCNI	CTCAG	2 cut(s)	129, 933
BspFNI	CGCG	2 cut(s)	240, 905
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	2 cut(s)	45, 795
BspPI	GGATC	6 cut(s)	38, 51, 141, 788, 801, 876
BsrI	ACTGG	2 cut(s)	428, 656
BssECI	CCNNGG	3 cut(s)	90, 359, 520
BssMI	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
BssNAI	GTATAC	1 cut(s)	727
BssNI	GRCGYC	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	727
Bst2UI	CCWGG	2 cut(s)	522, 541
Bst4CI	ACNGT	6 cut(s)	280, 607, 620, 814, 822, 879
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	62, 344
BstDEI	CTNAG	2 cut(s)	137, 920
BstF5I	GGATG	1 cut(s)	887
BstFNI	CGCG	2 cut(s)	240, 905
BstKTI	GATC	7 cut(s)	46, 136, 238, 676, 796, 871, 952
BstMBI	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	1 cut(s)	607
BstNI	CCWGG	2 cut(s)	522, 541
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	3 cut(s)	70, 520, 539
BstSFI	CTRYAG	1 cut(s)	528
BstSNI	TACGTA	1 cut(s)	293
BstUI	CGCG	2 cut(s)	240, 905
BstV1I	GCAGC	2 cut(s)	364, 753
BstV2I	GAAGAC	2 cut(s)	114, 441
BstX2I	RGATCY	3 cut(s)	43, 133, 793
BstXI	CCANNNNNNTGG	1 cut(s)	435
BstYI	RGATCY	3 cut(s)	43, 133, 793
BstZ17I	GTATAC	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	7 cut(s)	82, 95, 364, 487, 525, 544, 601
BtsCI	GGATG	1 cut(s)	887
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 928
BtuMI	TCGCGA	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	62, 344
CaiI	CAGNNNCTG	1 cut(s)	781
CciI	TCATGA	1 cut(s)	577
Cfr13I	GGNCC	3 cut(s)	80, 524, 599
CseI	GACGC	2 cut(s)	733, 911
Csp6I	GTAC	2 cut(s)	37, 627
CviAII	CATG	7 cut(s)	61, 299, 441, 578, 692, 841, 956
CviQI	GTAC	2 cut(s)	37, 627
DdeI	CTNAG	2 cut(s)	137, 920
DpnI	GATC	7 cut(s)	45, 135, 237, 675, 795, 870, 951
DpnII	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	2 cut(s)	143, 414
Eco105I	TACGTA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	359
Eco57I	CTGAAG	3 cut(s)	338, 758, 803
Eco88I	CYCGRG	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	520, 539
EcoT14I	CCWWGG	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	7 cut(s)	64, 302, 444, 581, 695, 844, 959
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	7 cut(s)	60, 298, 440, 577, 691, 840, 955
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	3 cut(s)	58, 378, 742
FokI	GGATG	1 cut(s)	874
Fsp4HI	GCNGC	3 cut(s)	58, 378, 742
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	3 cut(s)	58, 378, 742
GsuI	CTGGAG	1 cut(s)	208
HaeIII	GGCC	7 cut(s)	82, 95, 364, 487, 525, 544, 601
HapII	CCGG	2 cut(s)	72, 197
HgaI	GACGC	2 cut(s)	733, 911
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	7 cut(s)	64, 302, 444, 581, 695, 844, 959
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	2 cut(s)	258, 399
HinfI	GANTC	9 cut(s)	75, 148, 467, 491, 511, 581, 732, 778, 916
HpaII	CCGG	2 cut(s)	72, 197
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	3 cut(s)	111, 682, 727
Hpy188I	TCNGA	7 cut(s)	48, 138, 153, 318, 777, 783, 798
Hpy188III	TCNNGA	5 cut(s)	177, 239, 578, 710, 857
Hpy8I	GTNNAC	3 cut(s)	111, 682, 727
Hpy99I	CGWCG	3 cut(s)	106, 109, 950
HpyAV	CCTTC	2 cut(s)	313, 546
HpyCH4III	ACNGT	6 cut(s)	280, 607, 620, 814, 822, 879
HpyCH4IV	ACGT	2 cut(s)	107, 292
HpyCH4V	TGCA	5 cut(s)	302, 559, 624, 695, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	607
HpyF3I	CTNAG	2 cut(s)	137, 920
HpySE526I	ACGT	2 cut(s)	107, 292
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	7 cut(s)	64, 302, 444, 581, 695, 844, 959
Ksp22I	TGATCA	1 cut(s)	673
Kzo9I	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	364, 753
LweI	GCATC	2 cut(s)	355, 916
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	107, 292
MaeIII	GTNAC	2 cut(s)	760, 816
MalI	GATC	7 cut(s)	45, 135, 237, 675, 795, 870, 951
MboI	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
MboII	GAAGA	8 cut(s)	114, 157, 223, 441, 698, 764, 796, 799
MflI	RGATCY	3 cut(s)	43, 133, 793
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	3 cut(s)	165, 844, 860
MlyI	GAGTC	3 cut(s)	69, 520, 590
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	8 cut(s)	22, 100, 124, 224, 233, 363, 402, 859
Mph1103I	ATGCAT	1 cut(s)	697
MseI	TTAA	2 cut(s)	477, 970
MslI	CAYNNNNRTG	1 cut(s)	690
MspI	CCGG	2 cut(s)	72, 197
MspR9I	CCNGG	3 cut(s)	72, 522, 541
MvaI	CCWGG	2 cut(s)	522, 541
MvnI	CGCG	2 cut(s)	240, 905
MwoI	GCNNNNNNNGC	1 cut(s)	607
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
NlaIII	CATG	7 cut(s)	64, 302, 444, 581, 695, 844, 959
NlaIV	GGNNCC	2 cut(s)	45, 795
NmeAIII	GCCGAG	1 cut(s)	71
NruI	TCGCGA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	697
NspI	RCATGY	1 cut(s)	64
PaeI	GCATGC	1 cut(s)	64
PagI	TCATGA	1 cut(s)	577
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 110
PfeI	GAWTC	6 cut(s)	148, 467, 491, 732, 778, 916
PflFI	GACNNNGTC	2 cut(s)	106, 118
PflMI	CCANNNNNTGG	1 cut(s)	662
PkrI	GCNGC	3 cut(s)	59, 379, 743
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	3 cut(s)	69, 519, 589
PpsI	GAGTC	3 cut(s)	69, 519, 589
Ppu21I	YACGTR	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	520, 539
PspGI	CCWGG	2 cut(s)	520, 539
PspN4I	GGNNCC	2 cut(s)	45, 795
PspPI	GGNCC	3 cut(s)	80, 524, 599
PstNI	CAGNNNCTG	1 cut(s)	781
PsuI	RGATCY	3 cut(s)	43, 133, 793
PsyI	GACNNNGTC	2 cut(s)	106, 118
PvuI	CGATCG	1 cut(s)	238
RruI	TCGCGA	1 cut(s)	240
RsaI	GTAC	2 cut(s)	38, 628
RsaNI	GTAC	2 cut(s)	37, 627
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	477, 970
SatI	GCNGC	3 cut(s)	58, 378, 742
Sau3AI	GATC	7 cut(s)	43, 133, 235, 673, 793, 868, 949
Sau96I	GGNCC	3 cut(s)	80, 524, 599
SchI	GAGTC	3 cut(s)	69, 520, 590
ScrFI	CCNGG	3 cut(s)	72, 522, 541
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	2 cut(s)	355, 916
SfcI	CTRYAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
SnaBI	TACGTA	1 cut(s)	293
SphI	GCATGC	1 cut(s)	64
Sse9I	AATT	3 cut(s)	165, 844, 860
SsiI	CCGC	4 cut(s)	23, 57, 128, 425
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	3 cut(s)	70, 520, 539
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	6 cut(s)	280, 607, 620, 814, 822, 879
TaiI	ACGT	2 cut(s)	110, 295
TaqI	TCGA	3 cut(s)	216, 234, 864
TasI	AATT	3 cut(s)	165, 844, 860
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	6 cut(s)	148, 467, 491, 732, 778, 916
Tru1I	TTAA	2 cut(s)	477, 970
Tru9I	TTAA	2 cut(s)	477, 970
TscAI	CASTG	2 cut(s)	103, 928
TseI	GCWGC	2 cut(s)	377, 741
TspDTI	ATGAA	6 cut(s)	253, 441, 483, 724, 857, 876
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	2 cut(s)	103, 928
Tth111I	GACNNNGTC	2 cut(s)	106, 118
Van91I	CCANNNNNTGG	1 cut(s)	662
XapI	RAATTY	2 cut(s)	844, 860
XceI	RCATGY	1 cut(s)	64
XmaJI	CCTAGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	1 cut(s)	360
ZraI	GACGTC	1 cut(s)	108
Zsp2I	ATGCAT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.