Rw1G037660
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0011669
Physical Location & Seq
Reverse (-)
65293883 .. 65296607
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037660.1

Sequence Viewer

Length: 894 bp
ATGGTATCCAAAAACCCGACTCCGCCCGACGGCCTGTACTTGGATCCGAACGAAATGGCGTACCCGGACTCGGGCCATTCGCGTCTCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCCGAGCACGATAAGTTCCTCGAAGCTCTTCAGCTCTTTGACCGGGATTGGAAGAAGATTGAAGCTTTTATGATACGCAGTCATGCACAGAAGTATTTCCTGAAGGTTCAGAAGAATGGGACAAGCGAGCATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCCTACCCTCAGAAAGCCTCAAAAAATGTGCTGGCACTCCCACAAGTGTCTGGTTCATGTCAATCTTCATCGGCGTTACTTGAATCTGCGTTCATCCAAAGGCCAGATTCATCATCGGTGCTTATTAGTCCCATTCCTGGTGGTGTAGTCCCTTCTTGGCCTAATAGTTCTGTGCAAACAGCCAACCTATCACATGAGACCAAAGGGCCAGCTAAGCCGAGCTGCAATAGTGCAGAAAGCACTCCAAACGCTCAACCACCCAGTGAAACAACTGATCAAGGGAATCGCAGCCTTAATCATAACCATCCATTGAGAGTTCTGCCTGACTTTTGTCAAGTATACGGCTTCATTGGCAGTGTCTTTGACCCTAATACTTCGGGGCATCTGCAGAAACTGAAGAAGATGGACCCTATAGATGTTGAAACGGTGTTACTGTTGATGAGAAATCTATCCATGAATTTGACAAGTCCCGATTTTGAGGATCATAGAAAGTTGCTTTCATCCTACAAGATTGATGCCGATACAACAGATCACCTTGATGCAAGTAAAAGCCTTCATAGCGACCAACAAAAGAATGTTGCTTGA

Protein Analysis

297

Amino Acids

33.11

Weight (kDa)

8.8

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVE6 PF24904 210 - 272 7.1e-38 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52660 AT5G52660
fragaria_vesca FvH4_7g30300
malus_domestica MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica Prupe.2G301500_v2.0.a1
pyrus_communis pycom01g21950 pycom07g25410
rosa_chinensis RchiOBHm_Chr1g0378441
rosa_laevigata RLG00000026436
rosa_multiflora Rmu_sc0000938.1_g000005
rosa_roxburghii Rroxscaffold_4G00280460
rosa_rugosa Rorug01G0408700 Rorug01G0408800
rosa_samantha Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana Rw1G037660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 648
AccII CGCG 1 cut(s) 82
AciI CCGC 1 cut(s) 23
AclWI GGATC 3 cut(s) 38, 51, 798
AcsI RAATTY 1 cut(s) 766
AcuI CTGAAG 3 cut(s) 155, 263, 725
AdeI CACNNNGTG 1 cut(s) 572
AfaI GTAC 2 cut(s) 38, 62
AfiI CCNNNNNNNGG 5 cut(s) 29, 40, 70, 71, 446
AgsI TTSAA 3 cut(s) 203, 392, 731
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 7 cut(s) 132, 167, 175, 206, 302, 521, 531
AluI AGCT 7 cut(s) 132, 167, 175, 206, 302, 521, 531
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 89, 500
AlwI GGATC 3 cut(s) 38, 51, 798
AlwNI CAGNNNCTG 1 cut(s) 703
Ama87I CYCGRG 2 cut(s) 70, 143
AoxI GGCC 6 cut(s) 31, 73, 287, 410, 467, 515
ApeKI GCWGC 2 cut(s) 531, 597
ApoI RAATTY 1 cut(s) 766
Asp700I GAANNNNTTC 2 cut(s) 168, 236
AspA2I CCTAGG 1 cut(s) 284
AspS9I GGNCC 3 cut(s) 73, 515, 715
AsuC2I CCSGG 2 cut(s) 65, 185
AsuHPI GGTGA 2 cut(s) 299, 833
AvaI CYCGRG 2 cut(s) 70, 143
AvaII GGWCC 1 cut(s) 715
AvrII CCTAGG 1 cut(s) 284
BamHI GGATCC 1 cut(s) 43
BanII GRGCYC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 518, 609
BccI CCATC 2 cut(s) 621, 706
BceAI ACGGC 2 cut(s) 46, 667
BciT130I CCWGG 1 cut(s) 447
BciVI GTATCC 1 cut(s) 16
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 2 cut(s) 65, 185
BcoDI GTCTC 2 cut(s) 89, 500
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 2 cut(s) 695, 720
BfuI GTATCC 1 cut(s) 16
BisI GCNGC 2 cut(s) 532, 598
BlnI CCTAGG 1 cut(s) 284
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 2 cut(s) 533, 599
Bme1390I CCNGG 3 cut(s) 65, 185, 447
Bme18I GGWCC 1 cut(s) 715
BmeT110I CYCGRG 2 cut(s) 70, 143
BmgT120I GGNCC 3 cut(s) 73, 515, 715
BmiI GGNNCC 2 cut(s) 45, 717
BmrFI CCNGG 3 cut(s) 65, 185, 447
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 4 cut(s) 280, 700, 814, 838
BmuI ACTGGG 1 cut(s) 564
BoxI GACNNNNGTC 1 cut(s) 639
Bpu1102I GCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 2 cut(s) 65, 185
BsaI GGTCTC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 284
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 40, 70, 71, 446
Bse1I ACTGG 1 cut(s) 570
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 3 cut(s) 402, 613, 809
BseLI CCNNNNNNNGG 5 cut(s) 29, 40, 70, 71, 446
BseMII CTCAG 2 cut(s) 129, 332
BseNI ACTGG 1 cut(s) 570
BseXI GCAGC 2 cut(s) 518, 609
BsgI GTGCAG 1 cut(s) 561
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 6 cut(s) 33, 75, 289, 412, 469, 517
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 2 cut(s) 70, 143
BsiSI CCGG 2 cut(s) 65, 184
BslFI GGGAC 4 cut(s) 274, 423, 443, 762
BslI CCNNNNNNNGG 5 cut(s) 29, 40, 70, 71, 446
BsmAI GTCTC 2 cut(s) 89, 500
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 4 cut(s) 274, 423, 443, 762
BsnI GGCC 6 cut(s) 33, 75, 289, 412, 469, 517
Bso31I GGTCTC 1 cut(s) 500
BsoBI CYCGRG 2 cut(s) 70, 143
Bsp1286I GDGCHC 2 cut(s) 144, 150
Bsp143I GATC 4 cut(s) 43, 583, 790, 838
Bsp1720I GCTNAGC 1 cut(s) 522
BspACI CCGC 1 cut(s) 23
BspANI GGCC 6 cut(s) 33, 75, 289, 412, 469, 517
BspCNI CTCAG 2 cut(s) 130, 331
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 45, 717
BspMAI CTGCAG 1 cut(s) 699
BspPI GGATC 3 cut(s) 38, 51, 798
BspQI GCTCTTC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 500
BsrI ACTGG 1 cut(s) 570
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 4 cut(s) 43, 583, 790, 838
BssNAI GTATAC 1 cut(s) 649
BssT1I CCWWGG 1 cut(s) 284
Bst1107I GTATAC 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 736, 744
Bst6I CTCTTC 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 269, 342, 519
BstDEI CTNAG 3 cut(s) 138, 318, 522
BstF5I GGATG 3 cut(s) 402, 613, 809
BstFNI CGCG 1 cut(s) 82
BstKTI GATC 4 cut(s) 46, 586, 793, 841
BstMAI GTCTC 2 cut(s) 89, 500
BstMBI GATC 4 cut(s) 43, 583, 790, 838
BstMWI GCNNNNNNNGC 3 cut(s) 523, 660, 867
BstNI CCWGG 1 cut(s) 447
BstPAI GACNNNNGTC 1 cut(s) 639
BstSCI CCNGG 3 cut(s) 63, 183, 445
BstSFI CTRYAG 2 cut(s) 695, 720
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 518, 609
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BstZ17I GTATAC 1 cut(s) 649
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 6 cut(s) 33, 75, 289, 412, 469, 517
BtsCI GGATG 3 cut(s) 402, 613, 809
BtsI GCAGTG 1 cut(s) 670
BtsIMutI CAGTG 2 cut(s) 577, 670
Cac8I GCNNGC 3 cut(s) 269, 342, 519
CaiI CAGNNNCTG 1 cut(s) 703
Cfr13I GGNCC 3 cut(s) 73, 515, 715
CseI GACGC 1 cut(s) 71
Csp6I GTAC 2 cut(s) 37, 61
CviAII CATG 4 cut(s) 224, 366, 503, 763
CviQI GTAC 2 cut(s) 37, 61
DdeI CTNAG 3 cut(s) 138, 318, 522
DpnI GATC 4 cut(s) 45, 585, 792, 840
DpnII GATC 4 cut(s) 43, 583, 790, 838
DraIII CACNNNGTG 1 cut(s) 572
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
EciI GGCGGA 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 500
Eco47I GGWCC 1 cut(s) 715
Eco57I CTGAAG 3 cut(s) 155, 263, 725
Eco88I CYCGRG 2 cut(s) 70, 143
EcoRII CCWGG 1 cut(s) 445
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 284
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 4 cut(s) 227, 369, 506, 766
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 4 cut(s) 274, 423, 443, 762
FatI CATG 4 cut(s) 223, 365, 502, 762
FbaI TGATCA 1 cut(s) 583
FblI GTMKAC 1 cut(s) 648
Fnu4HI GCNGC 2 cut(s) 532, 598
FokI GGATG 3 cut(s) 389, 600, 796
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 532, 598
FspBI CTAG 1 cut(s) 285
GluI GCNGC 2 cut(s) 532, 598
HaeIII GGCC 6 cut(s) 33, 75, 289, 412, 469, 517
HapII CCGG 2 cut(s) 65, 184
HgaI GACGC 1 cut(s) 71
Hin1II CATG 4 cut(s) 227, 369, 506, 766
HindIII AAGCTT 2 cut(s) 204, 300
HinfI GANTC 6 cut(s) 19, 68, 94, 392, 416, 592
HpaII CCGG 2 cut(s) 65, 184
HphI GGTGA 2 cut(s) 299, 833
Hpy166II GTNNAC 1 cut(s) 649
Hpy188I TCNGA 4 cut(s) 48, 99, 252, 321
Hpy188III TCNNGA 4 cut(s) 88, 123, 241, 779
Hpy8I GTNNAC 1 cut(s) 649
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 3 cut(s) 238, 471, 872
HpyCH4III ACNGT 2 cut(s) 736, 744
HpyCH4V TGCA 6 cut(s) 227, 484, 534, 542, 697, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 523, 660, 867
HpyF3I CTNAG 3 cut(s) 138, 318, 522
Hsp92II CATG 4 cut(s) 227, 369, 506, 766
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 4 cut(s) 43, 583, 790, 838
LguI GCTCTTC 1 cut(s) 174
Lsp1109I GCAGC 2 cut(s) 518, 609
LweI GCATC 4 cut(s) 280, 700, 814, 838
MaeI CTAG 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 384, 738
MalI GATC 4 cut(s) 45, 585, 792, 840
MboI GATC 4 cut(s) 43, 583, 790, 838
MboII GAAGA 8 cut(s) 103, 161, 205, 208, 265, 366, 718, 721
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 144, 150
MluCI AATT 1 cut(s) 766
MlyI GAGTC 2 cut(s) 13, 62
MnlI CCTC 5 cut(s) 170, 288, 327, 337, 781
MroXI GAANNNNTTC 2 cut(s) 168, 236
MseI TTAA 1 cut(s) 603
MslI CAYNNNNRTG 1 cut(s) 846
MspI CCGG 2 cut(s) 65, 184
MspR9I CCNGG 3 cut(s) 65, 185, 447
MvaI CCWGG 1 cut(s) 447
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 523, 660, 867
NciI CCSGG 2 cut(s) 65, 185
NdeII GATC 4 cut(s) 43, 583, 790, 838
NlaIII CATG 4 cut(s) 227, 369, 506, 766
NlaIV GGNNCC 2 cut(s) 45, 717
NmeAIII GCCGAG 1 cut(s) 552
PciSI GCTCTTC 1 cut(s) 174
PdmI GAANNNNTTC 2 cut(s) 168, 236
PfeI GAWTC 4 cut(s) 94, 392, 416, 592
PkrI GCNGC 2 cut(s) 533, 599
PleI GAGTC 2 cut(s) 13, 62
PpsI GAGTC 2 cut(s) 13, 62
PshAI GACNNNNGTC 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 45, 717
PspPI GGNCC 3 cut(s) 73, 515, 715
PstI CTGCAG 1 cut(s) 699
PstNI CAGNNNCTG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 2 cut(s) 38, 62
RsaNI GTAC 2 cut(s) 37, 61
RseI CAYNNNNRTG 1 cut(s) 846
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 603
SatI GCNGC 2 cut(s) 532, 598
Sau3AI GATC 4 cut(s) 43, 583, 790, 838
Sau96I GGNCC 3 cut(s) 73, 515, 715
SchI GAGTC 2 cut(s) 13, 62
ScrFI CCNGG 3 cut(s) 65, 185, 447
SduI GDGCHC 2 cut(s) 144, 150
SfaNI GCATC 4 cut(s) 280, 700, 814, 838
SfcI CTRYAG 2 cut(s) 695, 720
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 846
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 766
SsiI CCGC 1 cut(s) 23
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 3 cut(s) 63, 183, 445
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 2 cut(s) 736, 744
TaqI TCGA 1 cut(s) 162
TasI AATT 1 cut(s) 766
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 4 cut(s) 94, 392, 416, 592
Tru1I TTAA 1 cut(s) 603
Tru9I TTAA 1 cut(s) 603
TscAI CASTG 2 cut(s) 577, 670
TseI GCWGC 2 cut(s) 531, 597
TspDTI ATGAA 8 cut(s) 354, 366, 391, 408, 646, 779, 798, 854
TspRI CASTG 2 cut(s) 577, 670
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 1 cut(s) 766
XmaJI CCTAGG 1 cut(s) 284
XmiI GTMKAC 1 cut(s) 648
XmnI GAANNNNTTC 2 cut(s) 168, 236
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.