Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Forward (+)

51467515 .. 51470500

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0408700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGCTAAGGTACGGAGCACCTCCATCACTCTCCCTGAGGATGCTATCTTCTTCTTCACCCTCACTGCACTCCCTAAACCCTAACCCTAAATCACTCCCCGCCTCTTCAATTCCCGATTCCTCCCCCAATCGCCGTCTTCAACTCTTCTCTAATCCAATTCCAAACCCAATTGGGATTTTTAAACACTGTAACCCTCAAAGTATGACTCTTTCTAGATGCTTGTCCGGGTCAACCAACCCAGTACCCATTTCGAGCTTACCCGAATCGGATGATTCGGATTCGAAAGCTCTGGTGGTCGTCTCCTTCTACAAGTTCGCTGATTTTCCTGACTGTGCTCGTTTGCGGCAACCCTTGAAGCAACTCTGCGAGGAATTGCGCGTTTCAGGTGGGATCATACTTGCACCGGAAGGGATCAATGGCAGCATATGCGGAAGCAGAGAGTCGGTGGAGAAAGTTCTGGAGTTCATTCAAAGTGATGAGCGCCTAAGGGGGCTGAGAAGATTGGAGTCACCTGTGAGTCCGGAGGATGAAGCCATTCATCACGGACACAGTAGCAGTTCTCCTCTGGCAGCAGGGGAGGATGCACCCTTCCGATGGGATCATGTGAGGGTCAAGTTGAAGAAGGAGATTGTTACTCTTGGCATGCCTGCTGTATCACCTACTGAAAAAGTTGGGAAGTATGTGAGTCCAAGTGAATGGAATGAACTGATTAGTGATCCAGATACGGTTGTAATTGATGTGCGCAATAACTATGAAACTAGAATTGGGAAGTTTAAGGGAGCAGTTGATCCGTGTACTAAAGCATTCCGGGAGTTCCCGTCTTGGGTAGAGGATCAGTTCCAGCCTTCTGAACCGGAGAATGGGCATACAGAAACAAATGCCTACAGTTCAGATGGAAGCACCAAAAATCAACCAGAGATTTCAAAACCAAAAACACCACCACGAGTTGCCATGTACTGTACTGGGGGCATTAGATGTGAGAAAGCTTCTAGTTATCTCCTCAGCAAAGGTTTTGAAGAGGTTTATCATCTAGAAGGTGGGATTCTAAAGTATCTTGAGGAAGTTCCAGAGAAAGAGAGCCTGTGGGAGGGAGAGTGCTTTGTCTTTGACAAGAGAGTCTCTGTTGAGCACGGTCTAGTACAAGGAAATCACAAGTTATGCTATGGGTGTAAGCAACCAGTCAGTGATGCTGATATGGAGTCTCCTCATTGGGAATACGGGGTTTCGTGTCCCTATTGTTACTCGTCAAAGACCATCGAAGAAAAGGAAAGGGCAAGAGCTCGACAAAGGCAGTTTGAGACATGGGGTATCATTGGCGGTCCAGACAAGGGCCGTAAGCCAGATACTATCAAACAGAGGCCTACTCAACTGTCAAATTCAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

461

Amino Acids

51.26

Weight (kDa)

6.18

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0176_N	PF17773	98 - 210	1.9e-22	UPF0176 acylphosphatase like domain
Rhodanese	PF00581	230 - 353	1.4e-07	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1115
Acc16I	TGCGCA	1 cut(s)	743
AccII	CGCG	1 cut(s)	378
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	4 cut(s)	99, 343, 429, 1317
AclWI	GGATC	6 cut(s)	398, 419, 606, 710, 782, 840
AcsI	RAATTY	1 cut(s)	1375
AfaI	GTAC	6 cut(s)	11, 243, 796, 956, 961, 1140
AfiI	CCNNNNNNNGG	5 cut(s)	594, 823, 860, 1087, 1328
AgsI	TTSAA	8 cut(s)	108, 140, 355, 470, 619, 924, 1016, 1380
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AluBI	AGCT	4 cut(s)	255, 287, 986, 1280
AluI	AGCT	4 cut(s)	255, 287, 986, 1280
Alw21I	GWGCWC	4 cut(s)	19, 337, 1131, 1282
Alw26I	GTCTC	4 cut(s)	304, 1123, 1206, 1292
AlwI	GGATC	6 cut(s)	398, 419, 606, 710, 782, 840
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	2 cut(s)	1330, 1358
ApeKI	GCWGC	2 cut(s)	420, 569
ApoI	RAATTY	1 cut(s)	1375
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	3 cut(s)	378, 483, 744
AspS9I	GGNCC	2 cut(s)	1319, 1330
AsuC2I	CCSGG	2 cut(s)	226, 809
AsuHPI	GGTGA	3 cut(s)	48, 501, 648
AsuII	TTCGAA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	1319
AxyI	CCTNAGG	2 cut(s)	35, 485
BaeI	ACNNNNGTAYC	2 cut(s)	714, 747
BanII	GRGCYC	1 cut(s)	1282
BauI	CACGAG	1 cut(s)	942
BbsI	GAAGAC	1 cut(s)	128
Bbv12I	GWGCWC	4 cut(s)	19, 337, 1131, 1282
BbvCI	CCTCAGC	1 cut(s)	1001
BbvI	GCAGC	2 cut(s)	432, 581
BccI	CCATC	4 cut(s)	31, 588, 887, 1262
BceAI	ACGGC	2 cut(s)	117, 1317
BcnI	CCSGG	2 cut(s)	226, 809
BcoDI	GTCTC	4 cut(s)	304, 1123, 1206, 1292
BfaI	CTAG	5 cut(s)	213, 759, 990, 1031, 1136
BfmI	CTRYAG	1 cut(s)	883
BfoI	RGCGCY	1 cut(s)	484
BisI	GCNGC	3 cut(s)	344, 421, 570
BlsI	GCNGC	3 cut(s)	345, 422, 571
Bme1390I	CCNGG	2 cut(s)	226, 809
Bme18I	GGWCC	1 cut(s)	1319
BmgT120I	GGNCC	2 cut(s)	1319, 1330
BmrFI	CCNGG	2 cut(s)	226, 809
BmrI	ACTGGG	2 cut(s)	233, 972
BmsI	GCATC	4 cut(s)	30, 206, 571, 1177
BmuI	ACTGGG	2 cut(s)	233, 972
BpiI	GAAGAC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	1348, 1380
BpmI	CTGGAG	1 cut(s)	479
Bpu10I	CCTNAGC	2 cut(s)	5, 1001
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	1076
BpuMI	CCSGG	2 cut(s)	226, 809
BsaWI	WCCGGW	3 cut(s)	403, 520, 853
BsaXI	ACNNNNNCTCC	4 cut(s)	803, 833, 1079, 1109
Bsc4I	CCNNNNNNNGG	5 cut(s)	594, 823, 860, 1087, 1328
Bse1I	ACTGG	3 cut(s)	239, 967, 1178
Bse21I	CCTNAGG	2 cut(s)	35, 485
BseAI	TCCGGA	1 cut(s)	520
BseGI	GGATG	4 cut(s)	45, 274, 532, 586
BseLI	CCNNNNNNNGG	5 cut(s)	594, 823, 860, 1087, 1328
BseMII	CTCAG	3 cut(s)	26, 485, 1015
BseNI	ACTGG	3 cut(s)	239, 967, 1178
BseRI	GAGGAG	3 cut(s)	552, 989, 1194
BseXI	GCAGC	2 cut(s)	432, 581
BsgI	GTGCAG	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	1332, 1360
BsiHKAI	GWGCWC	4 cut(s)	19, 337, 1131, 1282
BsiSI	CCGG	5 cut(s)	225, 404, 521, 808, 854
BslFI	GGGAC	1 cut(s)	1215
BslI	CCNNNNNNNGG	5 cut(s)	594, 823, 860, 1087, 1328
BsmAI	GTCTC	4 cut(s)	304, 1123, 1206, 1292
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	1215
BsmI	GAATGC	1 cut(s)	803
BsnI	GGCC	2 cut(s)	1332, 1360
Bsp119I	TTCGAA	1 cut(s)	281
Bsp1286I	GDGCHC	4 cut(s)	19, 337, 1131, 1282
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
BspACI	CCGC	4 cut(s)	99, 343, 429, 1317
BspANI	GGCC	2 cut(s)	1332, 1360
BspCNI	CTCAG	3 cut(s)	27, 486, 1014
BspEI	TCCGGA	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	378
BspPI	GGATC	6 cut(s)	398, 419, 606, 710, 782, 840
BspT104I	TTCGAA	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	239, 967, 1178
BssMI	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
BssSI	CACGAG	1 cut(s)	942
Bst2BI	CACGAG	1 cut(s)	942
Bst4CI	ACNGT	8 cut(s)	188, 332, 551, 727, 887, 959, 1133, 1371
Bst6I	CTCTTC	3 cut(s)	109, 149, 1011
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	644, 648
BstDEI	CTNAG	5 cut(s)	5, 35, 485, 494, 1001
BstENI	CCTNNNNNAGG	1 cut(s)	1085
BstF5I	GGATG	4 cut(s)	45, 274, 532, 586
BstFNI	CGCG	1 cut(s)	378
BstH2I	RGCGCY	1 cut(s)	484
BstHHI	GCGC	3 cut(s)	378, 483, 744
BstKTI	GATC	6 cut(s)	393, 414, 601, 718, 790, 835
BstMAI	GTCTC	4 cut(s)	304, 1123, 1206, 1292
BstMBI	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
BstMWI	GCNNNNNNNGC	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	224, 807
BstSFI	CTRYAG	1 cut(s)	883
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	432, 581
BstV2I	GAAGAC	1 cut(s)	128
BstXI	CCANNNNNNTGG	1 cut(s)	696
Bsu36I	CCTNAGG	2 cut(s)	35, 485
BsuRI	GGCC	2 cut(s)	1332, 1360
BtsCI	GGATG	4 cut(s)	45, 274, 532, 586
BtsI	GCAGTG	1 cut(s)	62
BtsIMutI	CAGTG	3 cut(s)	62, 184, 1189
Cac8I	GCNNGC	2 cut(s)	644, 648
CfoI	GCGC	3 cut(s)	378, 483, 744
Cfr13I	GGNCC	2 cut(s)	1319, 1330
Csp6I	GTAC	6 cut(s)	10, 242, 795, 955, 960, 1139
CviAII	CATG	4 cut(s)	602, 643, 952, 1302
CviQI	GTAC	6 cut(s)	10, 242, 795, 955, 960, 1139
DdeI	CTNAG	5 cut(s)	5, 35, 485, 494, 1001
DpnI	GATC	6 cut(s)	392, 413, 600, 717, 789, 834
DpnII	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
DraI	TTTAAA	1 cut(s)	181
DrdI	GACNNNNNNGTC	1 cut(s)	1115
DseDI	GACNNNNNNGTC	1 cut(s)	1115
Eam1104I	CTCTTC	3 cut(s)	109, 149, 1011
EarI	CTCTTC	3 cut(s)	109, 149, 1011
Ecl136II	GAGCTC	1 cut(s)	1280
Eco147I	AGGCCT	1 cut(s)	1360
Eco24I	GRGCYC	1 cut(s)	1282
Eco47I	GGWCC	1 cut(s)	1319
Eco53kI	GAGCTC	1 cut(s)	1280
Eco81I	CCTNAGG	2 cut(s)	35, 485
EcoICRI	GAGCTC	1 cut(s)	1280
EcoNI	CCTNNNNNAGG	1 cut(s)	1085
EcoT38I	GRGCYC	1 cut(s)	1282
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	4 cut(s)	605, 646, 955, 1305
FaqI	GGGAC	1 cut(s)	1215
FatI	CATG	4 cut(s)	601, 642, 951, 1301
FauI	CCCGC	1 cut(s)	106
FauNDI	CATATG	1 cut(s)	425
Fnu4HI	GCNGC	3 cut(s)	344, 421, 570
FokI	GGATG	4 cut(s)	52, 281, 539, 593
FriOI	GRGCYC	1 cut(s)	1282
Fsp4HI	GCNGC	3 cut(s)	344, 421, 570
FspBI	CTAG	5 cut(s)	213, 759, 990, 1031, 1136
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	3 cut(s)	377, 482, 743
GluI	GCNGC	3 cut(s)	344, 421, 570
GsuI	CTGGAG	1 cut(s)	479
HaeII	RGCGCY	1 cut(s)	484
HaeIII	GGCC	2 cut(s)	1332, 1360
HapII	CCGG	5 cut(s)	225, 404, 521, 808, 854
HhaI	GCGC	3 cut(s)	378, 483, 744
Hin1II	CATG	4 cut(s)	605, 646, 955, 1305
Hin6I	GCGC	3 cut(s)	376, 481, 742
HinP1I	GCGC	3 cut(s)	376, 481, 742
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	984
HpaII	CCGG	5 cut(s)	225, 404, 521, 808, 854
HphI	GGTGA	3 cut(s)	48, 501, 648
Hpy166II	GTNNAC	2 cut(s)	231, 795
Hpy188I	TCNGA	5 cut(s)	268, 277, 593, 850, 892
Hpy8I	GTNNAC	2 cut(s)	231, 795
HpyAV	CCTTC	6 cut(s)	313, 401, 598, 616, 855, 1028
HpyCH4III	ACNGT	8 cut(s)	188, 332, 551, 727, 887, 959, 1133, 1371
HpyCH4V	TGCA	3 cut(s)	67, 401, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	426
HpyF3I	CTNAG	5 cut(s)	5, 35, 485, 494, 1001
Hsp92II	CATG	4 cut(s)	605, 646, 955, 1305
HspAI	GCGC	3 cut(s)	376, 481, 742
Kpn2I	TCCGGA	1 cut(s)	520
Kzo9I	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
LmnI	GCTCC	2 cut(s)	14, 779
Lsp1109I	GCAGC	2 cut(s)	432, 581
LweI	GCATC	4 cut(s)	30, 206, 571, 1177
MaeI	CTAG	5 cut(s)	213, 759, 990, 1031, 1136
MaeIII	GTNAC	4 cut(s)	188, 507, 631, 1238
MalI	GATC	6 cut(s)	392, 413, 600, 717, 789, 834
MboI	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	4 cut(s)	19, 337, 1131, 1282
MluCI	AATT	8 cut(s)	108, 156, 168, 371, 732, 762, 1375, 1380
MlyI	GAGTC	7 cut(s)	199, 449, 515, 526, 694, 1125, 1208
MroI	TCCGGA	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	534
MseI	TTAA	2 cut(s)	180, 774
MspI	CCGG	5 cut(s)	225, 404, 521, 808, 854
MspR9I	CCNGG	2 cut(s)	226, 809
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	803
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	426
NciI	CCSGG	2 cut(s)	226, 809
NdeI	CATATG	1 cut(s)	425
NdeII	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
NlaIII	CATG	4 cut(s)	605, 646, 955, 1305
NmuCI	GTSAC	1 cut(s)	507
NsbI	TGCGCA	1 cut(s)	743
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	281
PaeI	GCATGC	1 cut(s)	646
PceI	AGGCCT	1 cut(s)	1360
PctI	GAATGC	1 cut(s)	803
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	5 cut(s)	116, 263, 272, 278, 1042
PfoI	TCCNGGA	1 cut(s)	807
PkrI	GCNGC	3 cut(s)	345, 422, 571
PleI	GAGTC	7 cut(s)	199, 448, 514, 525, 693, 1124, 1207
PpsI	GAGTC	7 cut(s)	199, 448, 514, 525, 693, 1124, 1207
Psp124BI	GAGCTC	1 cut(s)	1282
PspPI	GGNCC	2 cut(s)	1319, 1330
RsaI	GTAC	6 cut(s)	11, 243, 796, 956, 961, 1140
RsaNI	GTAC	6 cut(s)	10, 242, 795, 955, 960, 1139
SacI	GAGCTC	1 cut(s)	1282
SaqAI	TTAA	2 cut(s)	180, 774
SatI	GCNGC	3 cut(s)	344, 421, 570
Sau3AI	GATC	6 cut(s)	390, 411, 598, 715, 787, 832
Sau96I	GGNCC	2 cut(s)	1319, 1330
SchI	GAGTC	7 cut(s)	199, 449, 515, 526, 694, 1125, 1208
ScrFI	CCNGG	2 cut(s)	226, 809
SduI	GDGCHC	4 cut(s)	19, 337, 1131, 1282
SfaNI	GCATC	4 cut(s)	30, 206, 571, 1177
SfcI	CTRYAG	1 cut(s)	883
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	1319
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
SphI	GCATGC	1 cut(s)	646
Sse9I	AATT	8 cut(s)	108, 156, 168, 371, 732, 762, 1375, 1380
SseBI	AGGCCT	1 cut(s)	1360
SsiI	CCGC	4 cut(s)	99, 343, 429, 1317
SspMI	CTAG	5 cut(s)	213, 759, 990, 1031, 1136
SstI	GAGCTC	1 cut(s)	1282
StuI	AGGCCT	1 cut(s)	1360
StyD4I	CCNGG	2 cut(s)	224, 807
TaaI	ACNGT	8 cut(s)	188, 332, 551, 727, 887, 959, 1133, 1371
TaqI	TCGA	4 cut(s)	251, 281, 1257, 1282
TasI	AATT	8 cut(s)	108, 156, 168, 371, 732, 762, 1375, 1380
TatI	WGTACW	4 cut(s)	794, 954, 959, 1138
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	5 cut(s)	116, 263, 272, 278, 1042
Tru1I	TTAA	2 cut(s)	180, 774
Tru9I	TTAA	2 cut(s)	180, 774
TscAI	CASTG	3 cut(s)	69, 191, 1189
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	2 cut(s)	420, 569
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	5 cut(s)	454, 527, 543, 717, 768
TspGWI	ACGGA	3 cut(s)	27, 558, 780
TspRI	CASTG	3 cut(s)	69, 191, 1189
VpaK11BI	GGWCC	1 cut(s)	1319
XagI	CCTNNNNNAGG	1 cut(s)	1085
XapI	RAATTY	1 cut(s)	1375
XbaI	TCTAGA	2 cut(s)	212, 1030
XceI	RCATGY	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	5 cut(s)	213, 759, 990, 1031, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.