Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Reverse (-)

66743938 .. 66747201

Gene Structure 3264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG401500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTATCCAAAAACCCGACTCCGCCCGACGGCCTGTACTTGGATCCGAACGAAATGGCGTTACCCGGACTCGGGCCATTCGCGTCTGTCGCCACGGCGTCGACGTCGTCGTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCGGAGCACGATAAGTTCCTCGAAGCTCTTCAGCTCTTTGACCGGGATTGGAAGAAGATTGAAGCTTTTATCGGGTCGAAGACAGTTATACAGATACGCAGTCATGCACAGAAGTATTTCCTGAAGGTTCAGAAGAATGGGACAAGCGAGCATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCCTACCCTCAGAAAGCCTCAAAAAATGTGCTGGCACTCCCACAAGTGTCTGGTTCATGTCAATCTTCATCGGCGTTACTTGAATCTGCGTTCATCCAAAGGCCAGATTCATCATCGGTGCTTATTAGTCCCATTCCTGGTGGTGTAGTCCCTTCTTGGCCTAATAGTTCTGTGCAAACAGCCAACCTATCACATGAGACCAAAGGGCCAGCTAAGCCAAGCTGCAATAGTGCAGAAAGCACTCCAAACGCTCAACCAGCCAGTGAAACAACTGATCAAGGGAATCGCAGCCTTAATCATAACCATCCATTGAGAGTTCTGCCTGACTTTTGTCAAGTATACAGCTTCATTGGCAGTGTCTTTGACCCTAATACTTCAGGGCATCTGCAGAAACTGAAGAAGATGGACCCTATAGATGTTGAAACGGTGTTACTGTTGATGAGAAATCTATCCATGAATTTGACAAGTCCCGATTTTGAGGATCATAGAAAGTTGCTTTCATCCCACAAGATTGATGCCGATTCAACAGATCACCTTGATGCAAGTAAAAGCCTTCATAGCGACCAACAAAAGAATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

318

Amino Acids

34.91

Weight (kDa)

8.61

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	56 - 101	1.4e-10	Myb-like DNA-binding domain
RVE6	PF24904	231 - 292	2.8e-37	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	109
AatII	GACGTC	1 cut(s)	107
AccI	GTMKAC	2 cut(s)	101, 711
AccII	CGCG	1 cut(s)	83
AciI	CCGC	2 cut(s)	23, 116
AclWI	GGATC	4 cut(s)	38, 51, 129, 861
AcsI	RAATTY	1 cut(s)	829
AcuI	CTGAAG	4 cut(s)	197, 326, 732, 788
AcyI	GRCGYC	2 cut(s)	98, 104
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 509
AgsI	TTSAA	4 cut(s)	245, 455, 794, 897
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	8 cut(s)	174, 209, 217, 248, 365, 584, 594, 717
AluI	AGCT	8 cut(s)	174, 209, 217, 248, 365, 584, 594, 717
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	563
AlwI	GGATC	4 cut(s)	38, 51, 129, 861
AlwNI	CAGNNNCTG	1 cut(s)	766
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	6 cut(s)	31, 74, 350, 473, 530, 578
ApeKI	GCWGC	2 cut(s)	594, 660
ApoI	RAATTY	1 cut(s)	829
Asp700I	GAANNNNTTC	2 cut(s)	210, 299
AspA2I	CCTAGG	1 cut(s)	347
AspS9I	GGNCC	3 cut(s)	74, 578, 778
AsuC2I	CCSGG	2 cut(s)	66, 227
AsuHPI	GGTGA	2 cut(s)	362, 896
AvaI	CYCGRG	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	778
AvrII	CCTAGG	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	2 cut(s)	581, 672
BccI	CCATC	2 cut(s)	684, 769
BceAI	ACGGC	2 cut(s)	46, 111
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	646
BcnI	CCSGG	2 cut(s)	66, 227
BcoDI	GTCTC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	2 cut(s)	758, 783
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	2 cut(s)	595, 661
BlnI	CCTAGG	1 cut(s)	347
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	2 cut(s)	596, 662
Bme1390I	CCNGG	3 cut(s)	66, 227, 510
Bme18I	GGWCC	1 cut(s)	778
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	3 cut(s)	74, 578, 778
BmiI	GGNNCC	2 cut(s)	45, 780
BmrFI	CCNGG	3 cut(s)	66, 227, 510
BmsI	GCATC	4 cut(s)	343, 763, 877, 901
BoxI	GACNNNNGTC	1 cut(s)	702
BpiI	GAAGAC	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuMI	CCSGG	2 cut(s)	66, 227
BsaHI	GRCGYC	2 cut(s)	98, 104
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	2 cut(s)	93, 347
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 509
Bse1I	ACTGG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	93, 347
BseGI	GGATG	3 cut(s)	465, 676, 872
BseLI	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 509
BseMII	CTCAG	3 cut(s)	116, 171, 395
BseNI	ACTGG	1 cut(s)	633
BseXI	GCAGC	2 cut(s)	581, 672
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	6 cut(s)	33, 76, 352, 475, 532, 580
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	3 cut(s)	66, 185, 226
BslFI	GGGAC	4 cut(s)	337, 486, 506, 825
BslI	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 509
BsmAI	GTCTC	1 cut(s)	563
BsmFI	GGGAC	4 cut(s)	337, 486, 506, 825
BsnI	GGCC	6 cut(s)	33, 76, 352, 475, 532, 580
Bso31I	GGTCTC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	5 cut(s)	43, 121, 646, 853, 901
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	2 cut(s)	23, 116
BspANI	GGCC	6 cut(s)	33, 76, 352, 475, 532, 580
BspCNI	CTCAG	3 cut(s)	117, 172, 394
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	45, 780
BspMAI	CTGCAG	1 cut(s)	762
BspPI	GGATC	4 cut(s)	38, 51, 129, 861
BspQI	GCTCTTC	1 cut(s)	216
BspTNI	GGTCTC	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	633
BssECI	CCNNGG	2 cut(s)	93, 347
BssMI	GATC	5 cut(s)	43, 121, 646, 853, 901
BssNAI	GTATAC	1 cut(s)	712
BssNI	GRCGYC	2 cut(s)	98, 104
BssT1I	CCWWGG	1 cut(s)	347
Bst1107I	GTATAC	1 cut(s)	712
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	268, 799, 807
Bst6I	CTCTTC	1 cut(s)	216
BstACI	GRCGYC	2 cut(s)	98, 104
BstC8I	GCNNGC	3 cut(s)	332, 405, 582
BstDEI	CTNAG	4 cut(s)	125, 180, 381, 585
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	465, 676, 872
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	5 cut(s)	46, 124, 649, 856, 904
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	5 cut(s)	43, 121, 646, 853, 901
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 586, 629, 723, 930
BstNI	CCWGG	1 cut(s)	510
BstPAI	GACNNNNGTC	1 cut(s)	702
BstSCI	CCNGG	3 cut(s)	64, 225, 508
BstSFI	CTRYAG	2 cut(s)	758, 783
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	581, 672
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	43, 121
BstYI	RGATCY	2 cut(s)	43, 121
BstZ17I	GTATAC	1 cut(s)	712
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	6 cut(s)	33, 76, 352, 475, 532, 580
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	3 cut(s)	465, 676, 872
BtsI	GCAGTG	1 cut(s)	733
BtsIMutI	CAGTG	2 cut(s)	640, 733
Cac8I	GCNNGC	3 cut(s)	332, 405, 582
CaiI	CAGNNNCTG	1 cut(s)	766
Cfr13I	GGNCC	3 cut(s)	74, 578, 778
CseI	GACGC	2 cut(s)	72, 87
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	4 cut(s)	287, 429, 566, 826
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	4 cut(s)	125, 180, 381, 585
DpnI	GATC	5 cut(s)	45, 123, 648, 855, 903
DpnII	GATC	5 cut(s)	43, 121, 646, 853, 901
DrdI	GACNNNNNNGTC	1 cut(s)	109
DseDI	GACNNNNNNGTC	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
EciI	GGCGGA	2 cut(s)	12, 131
Eco130I	CCWWGG	1 cut(s)	347
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	1 cut(s)	778
Eco57I	CTGAAG	4 cut(s)	197, 326, 732, 788
Eco88I	CYCGRG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	508
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	4 cut(s)	290, 432, 569, 829
FalI	AAGNNNNNCTT	2 cut(s)	349, 381
FaqI	GGGAC	4 cut(s)	337, 486, 506, 825
FatI	CATG	4 cut(s)	286, 428, 565, 825
FbaI	TGATCA	1 cut(s)	646
FblI	GTMKAC	2 cut(s)	101, 711
Fnu4HI	GCNGC	2 cut(s)	595, 661
FokI	GGATG	3 cut(s)	452, 663, 859
Fsp4HI	GCNGC	2 cut(s)	595, 661
FspBI	CTAG	1 cut(s)	348
GluI	GCNGC	2 cut(s)	595, 661
HaeIII	GGCC	6 cut(s)	33, 76, 352, 475, 532, 580
HapII	CCGG	3 cut(s)	66, 185, 226
HgaI	GACGC	2 cut(s)	72, 87
Hin1I	GRCGYC	2 cut(s)	98, 104
Hin1II	CATG	4 cut(s)	290, 432, 569, 829
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HindIII	AAGCTT	2 cut(s)	246, 363
HinfI	GANTC	7 cut(s)	19, 69, 136, 455, 479, 655, 893
HpaII	CCGG	3 cut(s)	66, 185, 226
HphI	GGTGA	2 cut(s)	362, 896
Hpy166II	GTNNAC	2 cut(s)	102, 712
Hpy188I	TCNGA	5 cut(s)	48, 126, 141, 315, 384
Hpy188III	TCNNGA	3 cut(s)	165, 304, 842
Hpy8I	GTNNAC	2 cut(s)	102, 712
Hpy99I	CGWCG	6 cut(s)	32, 103, 106, 109, 112, 115
HpyAV	CCTTC	3 cut(s)	301, 534, 935
HpyCH4III	ACNGT	3 cut(s)	268, 799, 807
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	6 cut(s)	290, 547, 597, 605, 760, 914
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 586, 629, 723, 930
HpyF3I	CTNAG	4 cut(s)	125, 180, 381, 585
HpySE526I	ACGT	1 cut(s)	104
Hsp92I	GRCGYC	2 cut(s)	98, 104
Hsp92II	CATG	4 cut(s)	290, 432, 569, 829
Ksp22I	TGATCA	1 cut(s)	646
Kzo9I	GATC	5 cut(s)	43, 121, 646, 853, 901
LguI	GCTCTTC	1 cut(s)	216
LmnI	GCTCC	1 cut(s)	187
Lsp1109I	GCAGC	2 cut(s)	581, 672
LweI	GCATC	4 cut(s)	343, 763, 877, 901
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	3 cut(s)	60, 447, 801
MalI	GATC	5 cut(s)	45, 123, 648, 855, 903
MboI	GATC	5 cut(s)	43, 121, 646, 853, 901
MboII	GAAGA	9 cut(s)	145, 203, 247, 250, 274, 328, 429, 781, 784
MflI	RGATCY	2 cut(s)	43, 121
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	1 cut(s)	829
MlyI	GAGTC	2 cut(s)	13, 63
MnlI	CCTC	6 cut(s)	112, 212, 351, 390, 400, 844
MroXI	GAANNNNTTC	2 cut(s)	210, 299
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	909
MspI	CCGG	3 cut(s)	66, 185, 226
MspR9I	CCNGG	3 cut(s)	66, 227, 510
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	5 cut(s)	89, 586, 629, 723, 930
NciI	CCSGG	2 cut(s)	66, 227
NdeII	GATC	5 cut(s)	43, 121, 646, 853, 901
NlaIII	CATG	4 cut(s)	290, 432, 569, 829
NlaIV	GGNNCC	2 cut(s)	45, 780
PciSI	GCTCTTC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	2 cut(s)	101, 107
PdmI	GAANNNNTTC	2 cut(s)	210, 299
PfeI	GAWTC	5 cut(s)	136, 455, 479, 655, 893
PflFI	GACNNNGTC	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	596, 662
PleI	GAGTC	2 cut(s)	13, 63
PpsI	GAGTC	2 cut(s)	13, 63
PshAI	GACNNNNGTC	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	2 cut(s)	45, 780
PspPI	GGNCC	3 cut(s)	74, 578, 778
PstI	CTGCAG	1 cut(s)	762
PstNI	CAGNNNCTG	1 cut(s)	766
PsuI	RGATCY	2 cut(s)	43, 121
PsyI	GACNNNGTC	1 cut(s)	106
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	909
SalI	GTCGAC	1 cut(s)	100
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	2 cut(s)	595, 661
Sau3AI	GATC	5 cut(s)	43, 121, 646, 853, 901
Sau96I	GGNCC	3 cut(s)	74, 578, 778
SchI	GAGTC	2 cut(s)	13, 63
ScrFI	CCNGG	3 cut(s)	66, 227, 510
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	4 cut(s)	343, 763, 877, 901
SfcI	CTRYAG	2 cut(s)	758, 783
SgrDI	CGTCGACG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	778
SmiMI	CAYNNNNRTG	1 cut(s)	909
Sse9I	AATT	1 cut(s)	829
SsiI	CCGC	2 cut(s)	23, 116
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	64, 225, 508
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	268, 799, 807
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	3 cut(s)	101, 204, 260
TasI	AATT	1 cut(s)	829
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	5 cut(s)	136, 455, 479, 655, 893
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TscAI	CASTG	2 cut(s)	640, 733
TseI	GCWGC	2 cut(s)	594, 660
TspDTI	ATGAA	8 cut(s)	417, 429, 454, 471, 709, 842, 861, 917
TspRI	CASTG	2 cut(s)	640, 733
Tth111I	GACNNNGTC	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	778
XapI	RAATTY	1 cut(s)	829
XmaJI	CCTAGG	1 cut(s)	347
XmiI	GTMKAC	2 cut(s)	101, 711
XmnI	GAANNNNTTC	2 cut(s)	210, 299
XspI	CTAG	1 cut(s)	348
ZraI	GACGTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.