RLG00000026436
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011669
Physical Location & Seq
Forward (+)
3042884 .. 3045638
2755 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026436

Sequence Viewer

Length: 978 bp
ATGGTATCCAAAAACCCGACTCCGCCCGACGGCCTGTACTTGGATCCGAACGAAATGGCGTTACCCGGTCTCGGGCCATTCGCTTCTGTCGCCACGGCGGCGGCGACCACCACGGCGTCGACGACGTCGTCGTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCTGAGCACGATAAGTTCCTCGAAGCTCTCCAGCTCTTTGACCGCGATTGGAAGAAGATTGAAGCTTTTATTGGGTCAAAGACAGTTATACAGATACGTAGTCATGCACAGAAGTATTTCCTGAAGGTTCAGAAGAATGGGACAAGCGAGCATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCCTACCCTCAGAAAGCCTCAAAAAATGCGCTGGCACTCCCACAAGTGTCTGGGTCATGTCAGTCCTCGTCGGCTTTACTGGAATCTGGGTTCATCCAAAGGCCAGATTCATCATCGGTGCTTATTAGTCCCATTCCTGGTGGTGTAGTCCCTTCTTGGCCTAATAGTTCTGTGCAAACAGCCAACGTATCACATGAGACCAAAGGGCCAGCTAAGCCGAGCTGCAATAGTGCAGAAAGCACTCCAAAAGCTCATCCAGCCAGTGAAACAACTGATCACGGGAATCGCAGCCTTAATCATAACCATCCATTGAGAGTTCTGCCTGACTTTTGTCAAGTATACGGCTTCATTGGCAGTGTCTTTGACCCTAATACTTCAGGGCATCTGCAGAAACTGAAGAAGATGGACCCTATAGATGTTGAAACGGTGTTACTGTTGATGAGAAATCTATCCATGAATTTGACAAGTCCCGATTTTGAGGATCATAGAAAGTTGCTTTCATCCTACAAGATTGATGACGATACAACAGATCACCTTGATGCAAGTAAAAGCCTTCATAGCGACCAACAAAAGAATGTTGCTTGA

Protein Analysis

326

Amino Acids

35.56

Weight (kDa)

8.59

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 63 - 108 1.4e-10 Myb-like DNA-binding domain
RVE6 PF24904 238 - 300 8.3e-38 REVEILLE 6-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52660 AT5G52660
fragaria_vesca FvH4_7g30300
malus_domestica MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica Prupe.2G301500_v2.0.a1
pyrus_communis pycom01g21950 pycom07g25410
rosa_chinensis RchiOBHm_Chr1g0378441
rosa_laevigata RLG00000026436
rosa_multiflora Rmu_sc0000938.1_g000005
rosa_roxburghii Rroxscaffold_4G00280460
rosa_rugosa Rorug01G0408700 Rorug01G0408800
rosa_samantha Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana Rw1G037660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 127, 130
AatII GACGTC 1 cut(s) 128
AccI GTMKAC 2 cut(s) 119, 732
AccII CGCG 1 cut(s) 249
AciI CCGC 5 cut(s) 23, 98, 101, 137, 247
AclWI GGATC 4 cut(s) 38, 51, 150, 882
AcsI RAATTY 1 cut(s) 850
AcuI CTGAAG 3 cut(s) 347, 753, 809
AcyI GRCGYC 2 cut(s) 116, 125
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 530
AgsI TTSAA 2 cut(s) 266, 815
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 258, 290
AloI GAACNNNNNNTCC 2 cut(s) 467, 499
AluBI AGCT 8 cut(s) 195, 230, 238, 269, 386, 605, 615, 644
AluI AGCT 8 cut(s) 195, 230, 238, 269, 386, 605, 615, 644
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 2 cut(s) 74, 584
AlwI GGATC 4 cut(s) 38, 51, 150, 882
AlwNI CAGNNNCTG 1 cut(s) 787
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 6 cut(s) 31, 74, 371, 494, 551, 599
ApeKI GCWGC 2 cut(s) 615, 681
ApoI RAATTY 1 cut(s) 850
Asp700I GAANNNNTTC 1 cut(s) 320
AspA2I CCTAGG 1 cut(s) 368
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 3 cut(s) 74, 599, 799
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 383, 917
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 799
AvrII CCTAGG 1 cut(s) 368
BamHI GGATCC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 602, 693
BccI CCATC 2 cut(s) 705, 790
BceAI ACGGC 4 cut(s) 46, 111, 129, 751
BciT130I CCWGG 1 cut(s) 531
BciVI GTATCC 1 cut(s) 16
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 74, 584
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 2 cut(s) 779, 804
BfuI GTATCC 1 cut(s) 16
BglI GCCNNNNNGGC 1 cut(s) 98
BisI GCNGC 4 cut(s) 99, 102, 616, 682
BlnI CCTAGG 1 cut(s) 368
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 4 cut(s) 100, 103, 617, 683
Bme1390I CCNGG 2 cut(s) 66, 531
Bme18I GGWCC 1 cut(s) 799
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 74, 599, 799
BmiI GGNNCC 2 cut(s) 45, 801
BmrFI CCNGG 2 cut(s) 66, 531
BmsI GCATC 3 cut(s) 364, 784, 922
BoxI GACNNNNGTC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 302
BsaHI GRCGYC 2 cut(s) 116, 125
BsaI GGTCTC 2 cut(s) 74, 584
BsaJI CCNNGG 3 cut(s) 93, 111, 368
Bsc4I CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 530
Bse1I ACTGG 2 cut(s) 477, 654
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 93, 111, 368
BseGI GGATG 4 cut(s) 486, 646, 697, 893
BseLI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 530
BseMII CTCAG 4 cut(s) 137, 192, 198, 416
BseNI ACTGG 2 cut(s) 477, 654
BseXI GCAGC 2 cut(s) 602, 693
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 6 cut(s) 33, 76, 373, 496, 553, 601
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 4 cut(s) 358, 507, 527, 846
BslI CCNNNNNNNGG 5 cut(s) 29, 40, 71, 72, 530
BsmAI GTCTC 2 cut(s) 74, 584
BsmFI GGGAC 4 cut(s) 358, 507, 527, 846
BsnI GGCC 6 cut(s) 33, 76, 373, 496, 553, 601
Bso31I GGTCTC 2 cut(s) 74, 584
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 5 cut(s) 43, 142, 667, 874, 922
Bsp1720I GCTNAGC 1 cut(s) 606
BspACI CCGC 5 cut(s) 23, 98, 101, 137, 247
BspANI GGCC 6 cut(s) 33, 76, 373, 496, 553, 601
BspCNI CTCAG 4 cut(s) 138, 193, 199, 415
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 2 cut(s) 45, 801
BspMAI CTGCAG 1 cut(s) 783
BspPI GGATC 4 cut(s) 38, 51, 150, 882
BspTNI GGTCTC 2 cut(s) 74, 584
BsrI ACTGG 2 cut(s) 477, 654
BssECI CCNNGG 3 cut(s) 93, 111, 368
BssMI GATC 5 cut(s) 43, 142, 667, 874, 922
BssNAI GTATAC 1 cut(s) 733
BssNI GRCGYC 2 cut(s) 116, 125
BssT1I CCWWGG 1 cut(s) 368
Bst1107I GTATAC 1 cut(s) 733
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 3 cut(s) 289, 820, 828
BstACI GRCGYC 2 cut(s) 116, 125
BstBAI YACGTR 1 cut(s) 302
BstC8I GCNNGC 3 cut(s) 353, 426, 603
BstDEI CTNAG 5 cut(s) 146, 201, 207, 402, 606
BstDSI CCRYGG 2 cut(s) 93, 111
BstF5I GGATG 4 cut(s) 486, 646, 697, 893
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 5 cut(s) 46, 145, 670, 877, 925
BstMAI GTCTC 2 cut(s) 74, 584
BstMBI GATC 5 cut(s) 43, 142, 667, 874, 922
BstMWI GCNNNNNNNGC 6 cut(s) 89, 98, 607, 650, 744, 951
BstNI CCWGG 1 cut(s) 531
BstPAI GACNNNNGTC 1 cut(s) 723
BstSCI CCNGG 2 cut(s) 64, 529
BstSFI CTRYAG 2 cut(s) 779, 804
BstSNI TACGTA 1 cut(s) 302
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 602, 693
BstX2I RGATCY 2 cut(s) 43, 142
BstYI RGATCY 2 cut(s) 43, 142
BstZ17I GTATAC 1 cut(s) 733
BsuI GTATCC 1 cut(s) 16
BsuRI GGCC 6 cut(s) 33, 76, 373, 496, 553, 601
BtgI CCRYGG 2 cut(s) 93, 111
BtsCI GGATG 4 cut(s) 486, 646, 697, 893
BtsI GCAGTG 1 cut(s) 754
BtsIMutI CAGTG 2 cut(s) 661, 754
Cac8I GCNNGC 3 cut(s) 353, 426, 603
CaiI CAGNNNCTG 1 cut(s) 787
CfoI GCGC 1 cut(s) 424
Cfr13I GGNCC 3 cut(s) 74, 599, 799
CseI GACGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 37
CviAII CATG 4 cut(s) 308, 450, 587, 847
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 5 cut(s) 146, 201, 207, 402, 606
DpnI GATC 5 cut(s) 45, 144, 669, 876, 924
DpnII GATC 5 cut(s) 43, 142, 667, 874, 922
DrdI GACNNNNNNGTC 2 cut(s) 127, 130
DseDI GACNNNNNNGTC 2 cut(s) 127, 130
EciI GGCGGA 2 cut(s) 12, 152
Eco105I TACGTA 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 368
Eco31I GGTCTC 2 cut(s) 74, 584
Eco47I GGWCC 1 cut(s) 799
Eco57I CTGAAG 3 cut(s) 347, 753, 809
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 4 cut(s) 311, 453, 590, 850
FalI AAGNNNNNCTT 2 cut(s) 370, 402
FaqI GGGAC 4 cut(s) 358, 507, 527, 846
FatI CATG 4 cut(s) 307, 449, 586, 846
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 2 cut(s) 119, 732
Fnu4HI GCNGC 4 cut(s) 99, 102, 616, 682
FokI GGATG 4 cut(s) 473, 633, 684, 880
Fsp4HI GCNGC 4 cut(s) 99, 102, 616, 682
FspBI CTAG 1 cut(s) 369
GlaI GCGC 1 cut(s) 423
GluI GCNGC 4 cut(s) 99, 102, 616, 682
GsuI CTGGAG 1 cut(s) 218
HaeIII GGCC 6 cut(s) 33, 76, 373, 496, 553, 601
HapII CCGG 1 cut(s) 66
HgaI GACGC 1 cut(s) 105
HhaI GCGC 1 cut(s) 424
Hin1I GRCGYC 2 cut(s) 116, 125
Hin1II CATG 4 cut(s) 311, 453, 590, 850
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HindIII AAGCTT 2 cut(s) 267, 384
HinfI GANTC 5 cut(s) 19, 157, 476, 500, 676
HpaII CCGG 1 cut(s) 66
HphI GGTGA 2 cut(s) 383, 917
Hpy166II GTNNAC 2 cut(s) 120, 733
Hpy188I TCNGA 5 cut(s) 48, 147, 162, 336, 405
Hpy188III TCNNGA 3 cut(s) 186, 325, 863
Hpy8I GTNNAC 2 cut(s) 120, 733
Hpy99I CGWCG 8 cut(s) 32, 121, 124, 127, 130, 133, 136, 466
HpyAV CCTTC 3 cut(s) 322, 555, 956
HpyCH4III ACNGT 3 cut(s) 289, 820, 828
HpyCH4IV ACGT 3 cut(s) 125, 301, 579
HpyCH4V TGCA 6 cut(s) 311, 568, 618, 626, 781, 935
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 98, 607, 650, 744, 951
HpyF3I CTNAG 5 cut(s) 146, 201, 207, 402, 606
HpySE526I ACGT 3 cut(s) 125, 301, 579
Hsp92I GRCGYC 2 cut(s) 116, 125
Hsp92II CATG 4 cut(s) 311, 453, 590, 850
HspAI GCGC 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 5 cut(s) 43, 142, 667, 874, 922
Lsp1109I GCAGC 2 cut(s) 602, 693
LweI GCATC 3 cut(s) 364, 784, 922
MaeI CTAG 1 cut(s) 369
MaeII ACGT 3 cut(s) 125, 301, 579
MaeIII GTNAC 2 cut(s) 60, 822
MalI GATC 5 cut(s) 45, 144, 669, 876, 924
MboI GATC 5 cut(s) 43, 142, 667, 874, 922
MboII GAAGA 6 cut(s) 166, 268, 271, 349, 802, 805
MflI RGATCY 2 cut(s) 43, 142
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 850
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 7 cut(s) 133, 233, 372, 411, 421, 469, 865
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 687
MslI CAYNNNNRTG 1 cut(s) 930
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 66, 531
MvaI CCWGG 1 cut(s) 531
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 6 cut(s) 89, 98, 607, 650, 744, 951
NciI CCSGG 1 cut(s) 66
NdeII GATC 5 cut(s) 43, 142, 667, 874, 922
NlaIII CATG 4 cut(s) 311, 453, 590, 850
NlaIV GGNNCC 2 cut(s) 45, 801
NmeAIII GCCGAG 1 cut(s) 636
PcsI WCGNNNNNNNCGW 4 cut(s) 101, 119, 125, 128
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 157, 476, 500, 676
PflFI GACNNNGTC 2 cut(s) 124, 127
PkrI GCNGC 4 cut(s) 100, 103, 617, 683
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 302
PshAI GACNNNNGTC 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 529
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 2 cut(s) 45, 801
PspPI GGNCC 3 cut(s) 74, 599, 799
PstI CTGCAG 1 cut(s) 783
PstNI CAGNNNCTG 1 cut(s) 787
PsuI RGATCY 2 cut(s) 43, 142
PsyI GACNNNGTC 2 cut(s) 124, 127
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 930
SalI GTCGAC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 687
SatI GCNGC 4 cut(s) 99, 102, 616, 682
Sau3AI GATC 5 cut(s) 43, 142, 667, 874, 922
Sau96I GGNCC 3 cut(s) 74, 599, 799
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 66, 531
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 3 cut(s) 364, 784, 922
SfcI CTRYAG 2 cut(s) 779, 804
SgrDI CGTCGACG 1 cut(s) 118
SinI GGWCC 1 cut(s) 799
SmiMI CAYNNNNRTG 1 cut(s) 930
SnaBI TACGTA 1 cut(s) 302
Sse9I AATT 1 cut(s) 850
SsiI CCGC 5 cut(s) 23, 98, 101, 137, 247
SspMI CTAG 1 cut(s) 369
StyD4I CCNGG 2 cut(s) 64, 529
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 3 cut(s) 289, 820, 828
TaiI ACGT 3 cut(s) 128, 304, 582
TaqI TCGA 2 cut(s) 119, 225
TasI AATT 1 cut(s) 850
TatI WGTACW 1 cut(s) 36
TauI GCSGC 2 cut(s) 101, 104
TfiI GAWTC 4 cut(s) 157, 476, 500, 676
Tru1I TTAA 1 cut(s) 687
Tru9I TTAA 1 cut(s) 687
TscAI CASTG 2 cut(s) 661, 754
TseI GCWGC 2 cut(s) 615, 681
TspDTI ATGAA 6 cut(s) 475, 492, 730, 863, 882, 938
TspRI CASTG 2 cut(s) 661, 754
Tth111I GACNNNGTC 2 cut(s) 124, 127
VpaK11BI GGWCC 1 cut(s) 799
XapI RAATTY 1 cut(s) 850
XmaJI CCTAGG 1 cut(s) 368
XmiI GTMKAC 2 cut(s) 119, 732
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 1 cut(s) 369
ZraI GACGTC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.