Rh1BG388000
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011669
Physical Location & Seq
Reverse (-)
51500226 .. 51503790
3565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG388000.1

Sequence Viewer

Length: 996 bp
ATGCCCCAACAAAACCTCCACCAGCTTCAGCCAACAATACCCAGAGGGTCCCTATATAACCTTCAAAGCCGCCGGCGCAAAAAATTCGCAAACTTCCTCGCACCTTCGGGAAAAAGCCCAAAACCCGACTCCGTTTCAAATTTTTGTATGGTATCCAAAAACCCGACTCCGCCCGACGGCCTGTACTTGGATCCGAACGAAATGGCGTTACCCGGACTCGGGCCATTCGCGTCTGTCGCCACGGCGTCGACGTCGTCGTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCGGAGCACGATAAGTTCCTCGAAGCTCTTCAGCTCTTTGACCGGGATTGGAAGAAGATTGAAGCTTTTATCGGGTCGAAGACAGTTATACAGATACGCAGTCATGCACAGAAGTATTTCCTGAAGGTTCAGAAGAATGGGACAAGCGAGCATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCCTACCCTCAGAAAGCCTCAAAAAATGTGCTGGCACTCCCACAAGTGTCTGGTTCATGTCAATCTTCATCGGCGTTACTTGAATCTGCGTTCATCCAAAGGCCAGATTCATCATCGGTGCTTATTAGTCCCATTCCTGGTGGTGTAGTCCCTTCTTGGCCTAATAGTTCTGTGCAAACAGCCAACCTATCACATGAGACCAAAGGGCCAGCTAAGCCAAGCTGCAATAGTGCAGAAAGCACTCCAAACGCTCAACCAGCCAGTGAAACAACTGATCAAGGGAATCGCAGCCTTAATCATAACCATCCATTGAGAGGTGAGGCTTCAATCTTCATACTTGAAGTTTTTCCTGCTTTTGAAATTAATAGTCACCTAAATGGTTCATTTATTGTAATATTGATTTTGGATTCTTTTTCACTTCGAAGTGGAATAAATTTATGGCAAAATATGGAATATTATTGTCATATACAAAAGTAA

Protein Analysis

331

Amino Acids

36.57

Weight (kDa)

9.48

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 150 1.5e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52660 AT5G52660
fragaria_vesca FvH4_7g30300
malus_domestica MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica Prupe.2G301500_v2.0.a1
pyrus_communis pycom01g21950 pycom07g25410
rosa_chinensis RchiOBHm_Chr1g0378441
rosa_laevigata RLG00000026436
rosa_multiflora Rmu_sc0000938.1_g000005
rosa_roxburghii Rroxscaffold_4G00280460
rosa_rugosa Rorug01G0408700 Rorug01G0408800
rosa_samantha Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana Rw1G037660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 256
AatII GACGTC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 248
AccII CGCG 1 cut(s) 230
AciI CCGC 3 cut(s) 70, 170, 263
AclWI GGATC 3 cut(s) 185, 198, 276
AcsI RAATTY 3 cut(s) 83, 139, 952
AcuI CTGAAG 3 cut(s) 11, 344, 473
AcyI GRCGYC 2 cut(s) 245, 251
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 6 cut(s) 176, 187, 218, 219, 656, 833
AgsI TTSAA 7 cut(s) 65, 138, 392, 602, 846, 860, 878
AjnI CCWGG 1 cut(s) 655
AluBI AGCT 8 cut(s) 25, 321, 356, 364, 395, 512, 731, 741
AluI AGCT 8 cut(s) 25, 321, 356, 364, 395, 512, 731, 741
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 710
AlwI GGATC 3 cut(s) 185, 198, 276
Ama87I CYCGRG 1 cut(s) 218
AoxI GGCC 6 cut(s) 178, 221, 497, 620, 677, 725
ApeKI GCWGC 2 cut(s) 741, 807
ApoI RAATTY 3 cut(s) 83, 139, 952
AseI ATTAAT 1 cut(s) 882
Asp700I GAANNNNTTC 3 cut(s) 357, 446, 864
AspA2I CCTAGG 1 cut(s) 494
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 3 cut(s) 48, 221, 725
AsuC2I CCSGG 2 cut(s) 213, 374
AsuHPI GGTGA 3 cut(s) 509, 848, 881
AsuII TTCGAA 1 cut(s) 940
AvaI CYCGRG 1 cut(s) 218
AvaII GGWCC 1 cut(s) 48
AvrII CCTAGG 1 cut(s) 494
BamHI GGATCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 728, 819
BccI CCATC 1 cut(s) 831
BceAI ACGGC 2 cut(s) 193, 258
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 1 cut(s) 657
BciVI GTATCC 1 cut(s) 163
BclI TGATCA 1 cut(s) 793
BcnI CCSGG 2 cut(s) 213, 374
BcoDI GTCTC 1 cut(s) 710
BfaI CTAG 1 cut(s) 495
BfuI GTATCC 1 cut(s) 163
BisI GCNGC 3 cut(s) 70, 742, 808
BlnI CCTAGG 1 cut(s) 494
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 3 cut(s) 71, 743, 809
Bme1390I CCNGG 3 cut(s) 213, 374, 657
Bme18I GGWCC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 48, 221, 725
BmiI GGNNCC 3 cut(s) 49, 50, 192
BmrFI CCNGG 3 cut(s) 213, 374, 657
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 416
Bpu1102I GCTNAGC 1 cut(s) 732
Bpu14I TTCGAA 1 cut(s) 940
BpuMI CCSGG 2 cut(s) 213, 374
BsaHI GRCGYC 2 cut(s) 245, 251
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 2 cut(s) 240, 494
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 187, 218, 219, 656, 833
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 780
BseBI CCWGG 1 cut(s) 657
BseDI CCNNGG 2 cut(s) 240, 494
BseGI GGATG 2 cut(s) 612, 823
BseLI CCNNNNNNNGG 6 cut(s) 176, 187, 218, 219, 656, 833
BseMII CTCAG 3 cut(s) 263, 318, 542
BseNI ACTGG 1 cut(s) 780
BseXI GCAGC 2 cut(s) 728, 819
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 6 cut(s) 180, 223, 499, 622, 679, 727
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 218
BsiSI CCGG 4 cut(s) 73, 213, 332, 373
BslFI GGGAC 4 cut(s) 34, 484, 633, 653
BslI CCNNNNNNNGG 6 cut(s) 176, 187, 218, 219, 656, 833
BsmAI GTCTC 1 cut(s) 710
BsmFI GGGAC 4 cut(s) 34, 484, 633, 653
BsnI GGCC 6 cut(s) 180, 223, 499, 622, 679, 727
Bso31I GGTCTC 1 cut(s) 710
BsoBI CYCGRG 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 940
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 190, 268, 793
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 3 cut(s) 70, 170, 263
BspANI GGCC 6 cut(s) 180, 223, 499, 622, 679, 727
BspCNI CTCAG 3 cut(s) 264, 319, 541
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 3 cut(s) 49, 50, 192
BspPI GGATC 3 cut(s) 185, 198, 276
BspQI GCTCTTC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 940
BspTNI GGTCTC 1 cut(s) 710
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 1 cut(s) 780
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 2 cut(s) 240, 494
BssMI GATC 3 cut(s) 190, 268, 793
BssNI GRCGYC 2 cut(s) 245, 251
BssT1I CCWWGG 1 cut(s) 494
Bst2UI CCWGG 1 cut(s) 657
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 1 cut(s) 363
BstACI GRCGYC 2 cut(s) 245, 251
BstBI TTCGAA 1 cut(s) 940
BstC8I GCNNGC 4 cut(s) 74, 479, 552, 729
BstDEI CTNAG 4 cut(s) 272, 327, 528, 732
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 612, 823
BstFNI CGCG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 3 cut(s) 193, 271, 796
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 3 cut(s) 190, 268, 793
BstMWI GCNNNNNNNGC 4 cut(s) 75, 236, 733, 776
BstNI CCWGG 1 cut(s) 657
BstSCI CCNGG 3 cut(s) 211, 372, 655
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 728, 819
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 2 cut(s) 190, 268
BstYI RGATCY 2 cut(s) 190, 268
BsuI GTATCC 1 cut(s) 163
BsuRI GGCC 6 cut(s) 180, 223, 499, 622, 679, 727
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 2 cut(s) 612, 823
BtsIMutI CAGTG 1 cut(s) 787
Cac8I GCNNGC 4 cut(s) 74, 479, 552, 729
CfoI GCGC 1 cut(s) 78
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 48, 221, 725
CseI GACGC 2 cut(s) 219, 234
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 434, 576, 713
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 4 cut(s) 272, 327, 528, 732
DpnI GATC 3 cut(s) 192, 270, 795
DpnII GATC 3 cut(s) 190, 268, 793
DrdI GACNNNNNNGTC 1 cut(s) 256
DseDI GACNNNNNNGTC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EciI GGCGGA 2 cut(s) 159, 278
Eco130I CCWWGG 1 cut(s) 494
Eco31I GGTCTC 1 cut(s) 710
Eco47I GGWCC 1 cut(s) 48
Eco57I CTGAAG 3 cut(s) 11, 344, 473
Eco88I CYCGRG 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 494
FaeI CATG 3 cut(s) 437, 579, 716
FalI AAGNNNNNCTT 2 cut(s) 496, 528
FaqI GGGAC 4 cut(s) 34, 484, 633, 653
FatI CATG 3 cut(s) 433, 575, 712
FbaI TGATCA 1 cut(s) 793
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 70, 742, 808
FokI GGATG 2 cut(s) 599, 810
Fsp4HI GCNGC 3 cut(s) 70, 742, 808
FspBI CTAG 1 cut(s) 495
GlaI GCGC 1 cut(s) 77
GluI GCNGC 3 cut(s) 70, 742, 808
HaeIII GGCC 6 cut(s) 180, 223, 499, 622, 679, 727
HapII CCGG 4 cut(s) 73, 213, 332, 373
HgaI GACGC 2 cut(s) 219, 234
HhaI GCGC 1 cut(s) 78
Hin1I GRCGYC 2 cut(s) 245, 251
Hin1II CATG 3 cut(s) 437, 579, 716
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HincII GTYRAC 1 cut(s) 249
HindII GTYRAC 1 cut(s) 249
HindIII AAGCTT 2 cut(s) 393, 510
HinfI GANTC 8 cut(s) 128, 166, 216, 283, 602, 626, 802, 926
HpaII CCGG 4 cut(s) 73, 213, 332, 373
HphI GGTGA 3 cut(s) 509, 848, 881
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 5 cut(s) 195, 273, 288, 462, 531
Hpy188III TCNNGA 3 cut(s) 108, 312, 451
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 6 cut(s) 179, 250, 253, 256, 259, 262
HpyAV CCTTC 4 cut(s) 71, 114, 448, 681
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 4 cut(s) 437, 694, 744, 752
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 236, 733, 776
HpyF3I CTNAG 4 cut(s) 272, 327, 528, 732
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 2 cut(s) 245, 251
Hsp92II CATG 3 cut(s) 437, 579, 716
HspAI GCGC 1 cut(s) 76
KflI GGGWCCC 1 cut(s) 48
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 793
Kzo9I GATC 3 cut(s) 190, 268, 793
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 2 cut(s) 728, 819
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 495
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 3 cut(s) 207, 594, 887
MalI GATC 3 cut(s) 192, 270, 795
MboI GATC 3 cut(s) 190, 268, 793
MboII GAAGA 8 cut(s) 292, 350, 394, 397, 421, 475, 576, 841
MflI RGATCY 2 cut(s) 190, 268
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 4 cut(s) 83, 139, 879, 952
MlyI GAGTC 3 cut(s) 122, 160, 210
MreI CGCCGGCG 1 cut(s) 72
MroNI GCCGGC 1 cut(s) 72
MroXI GAANNNNTTC 3 cut(s) 357, 446, 864
MseI TTAA 2 cut(s) 813, 882
MslI CAYNNNNRTG 1 cut(s) 894
MspI CCGG 4 cut(s) 73, 213, 332, 373
MspR9I CCNGG 3 cut(s) 213, 374, 657
MvaI CCWGG 1 cut(s) 657
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 4 cut(s) 75, 236, 733, 776
NaeI GCCGGC 1 cut(s) 74
NciI CCSGG 2 cut(s) 213, 374
NdeII GATC 3 cut(s) 190, 268, 793
NgoMIV GCCGGC 1 cut(s) 72
NlaIII CATG 3 cut(s) 437, 579, 716
NlaIV GGNNCC 3 cut(s) 49, 50, 192
NmuCI GTSAC 1 cut(s) 887
NspV TTCGAA 1 cut(s) 940
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 2 cut(s) 248, 254
PdiI GCCGGC 1 cut(s) 74
PdmI GAANNNNTTC 3 cut(s) 357, 446, 864
PfeI GAWTC 5 cut(s) 283, 602, 626, 802, 926
PflFI GACNNNGTC 1 cut(s) 253
PkrI GCNGC 3 cut(s) 71, 743, 809
PleI GAGTC 3 cut(s) 122, 160, 210
PpsI GAGTC 3 cut(s) 122, 160, 210
PpuMI RGGWCCY 1 cut(s) 48
PshBI ATTAAT 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 655
PspGI CCWGG 1 cut(s) 655
PspN4I GGNNCC 3 cut(s) 49, 50, 192
PspPI GGNCC 3 cut(s) 48, 221, 725
PspPPI RGGWCCY 1 cut(s) 48
PsuI RGATCY 2 cut(s) 190, 268
PsyI GACNNNGTC 1 cut(s) 253
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 894
SalI GTCGAC 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 2 cut(s) 813, 882
SatI GCNGC 3 cut(s) 70, 742, 808
Sau3AI GATC 3 cut(s) 190, 268, 793
Sau96I GGNCC 3 cut(s) 48, 221, 725
SchI GAGTC 3 cut(s) 122, 160, 210
ScrFI CCNGG 3 cut(s) 213, 374, 657
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 1 cut(s) 490
SfuI TTCGAA 1 cut(s) 940
SgrAI CRCCGGYG 1 cut(s) 72
SgrDI CGTCGACG 1 cut(s) 247
SinI GGWCC 1 cut(s) 48
SmiMI CAYNNNNRTG 1 cut(s) 894
Sse9I AATT 4 cut(s) 83, 139, 879, 952
SsiI CCGC 3 cut(s) 70, 170, 263
SspI AATATT 2 cut(s) 915, 974
SspMI CTAG 1 cut(s) 495
StyD4I CCNGG 3 cut(s) 211, 372, 655
StyI CCWWGG 1 cut(s) 494
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 1 cut(s) 254
TaqI TCGA 4 cut(s) 248, 351, 407, 940
TasI AATT 4 cut(s) 83, 139, 879, 952
TatI WGTACW 1 cut(s) 183
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 5 cut(s) 283, 602, 626, 802, 926
Tru1I TTAA 2 cut(s) 813, 882
Tru9I TTAA 2 cut(s) 813, 882
TscAI CASTG 1 cut(s) 787
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 2 cut(s) 741, 807
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 6 cut(s) 564, 576, 601, 618, 841, 891
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 1 cut(s) 787
Tth111I GACNNNGTC 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 48
VspI ATTAAT 1 cut(s) 882
XapI RAATTY 3 cut(s) 83, 139, 952
XmaJI CCTAGG 1 cut(s) 494
XmiI GTMKAC 1 cut(s) 248
XmnI GAANNNNTTC 3 cut(s) 357, 446, 864
XspI CTAG 1 cut(s) 495
ZraI GACGTC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.