Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Reverse (-)

30324886 .. 30328275

Gene Structure 3390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1208900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTATCCAAAAACCCGAACCTGCCAGAGGGCTTGTACTTGGATCCGGACGTAAACGGCATGGCGTTGGGCGGACTCGGGCCGTTCGCCTCGGTCACTGCGACGGCGTCAACGACGTCGTCTTCGGCGGAGGATCTCAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGAGCGAACCGGAGCACGACAAGTTCCTCGAAGCCCTCCAGCTCTTCGATCGCGATTGGAAAAAGATTGAGGCTTTCATTGGGTCAAAGACAGTCATACAGATACGTAGTCATGCACAGAAGTATTTTCTAAAGGTTCAAAAGAATGGGACAAGCGAGCATCTACCTCCCCCTAGGCCAAAAAGGAAAGCTGCTCATCCGTATCCTCAAAAAGCTTCAAAAAATGCTTTGGCACTTCCGCCGGTATCTGTGTCATGTCAGTCTTCATCTGCTTTACTTGAATCTGGGTTTAATCAAAGGCCAGATTCATCATCAATGCTAATGAGTCCCATCCCTGTAGCCACTTCTTGGACTAATGGTTCTGTGCAAACAGCCAATCCATCTCACGAGTCCAAAGGGCCAGCAACTGTGCCGAACAACAGTTGCAGCACCCCAGAAAGCACCCCTAAAGCTCAACCAGTTGGTGGAACAACTGATCAAGTGAACCATAGCCATGCATTGAGAGTTCTTCCCGACTTTACTCAAGTATACGGATTCATTGGCAGCGTCTTTGACCCCAATGTTACAGGTCATATGCAGAATCTGAAGAAGATGGATCCGATAGATGTTGAAACGGTGTTACTGTTGATGCGAAACCTGTCCATGAATTTGACCAATCCTGATTTCGAGGATCATAGACAGTTGCTTTCATCCCACAAGATGGATGCGGATACAGGGAATCTCAGTGATGAAACTAAAAGCCGTTGTGACAATCAACACGAGAAAGTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

320

Amino Acids

34.92

Weight (kDa)

7.77

Isoelectric Point (pI)

38.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	60 - 105	3.2e-10	Myb-like DNA-binding domain
RVE6	PF24904	232 - 293	3.2e-35	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	30
AccB7I	CCANNNNNTGG	3 cut(s)	534, 650, 886
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	1 cut(s)	240
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	4 cut(s)	72, 128, 425, 893
AclWI	GGATC	6 cut(s)	38, 51, 141, 776, 789, 864
AcsI	RAATTY	1 cut(s)	832
AcuI	CTGAAG	1 cut(s)	791
AcyI	GRCGYC	2 cut(s)	107, 116
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	4 cut(s)	28, 534, 650, 886
AgsI	TTSAA	4 cut(s)	326, 405, 467, 797
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AloI	GAACNNNNNNTCC	2 cut(s)	529, 561
AluBI	AGCT	5 cut(s)	186, 229, 377, 401, 638
AluI	AGCT	5 cut(s)	186, 229, 377, 401, 638
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	6 cut(s)	38, 51, 141, 776, 789, 864
AlwNI	CAGNNNCTG	2 cut(s)	593, 769
Ama87I	CYCGRG	1 cut(s)	77
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	4 cut(s)	80, 362, 485, 584
ApeKI	GCWGC	3 cut(s)	377, 612, 729
ApoI	RAATTY	1 cut(s)	832
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspA2I	CCTAGG	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	80, 584
AvaI	CYCGRG	1 cut(s)	77
AvrII	CCTAGG	1 cut(s)	359
BamHI	GGATCC	2 cut(s)	43, 781
BauI	CACGAG	2 cut(s)	572, 944
BbsI	GAAGAC	2 cut(s)	114, 441
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	364, 624, 741
BccI	CCATC	4 cut(s)	524, 574, 772, 880
BceAI	ACGGC	4 cut(s)	67, 73, 120, 912
BciVI	GTATCC	3 cut(s)	16, 399, 889
BclI	TGATCA	1 cut(s)	661
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	522
BfuAI	ACCTGC	1 cut(s)	30
BfuI	GTATCC	3 cut(s)	16, 399, 889
BisI	GCNGC	3 cut(s)	378, 613, 730
BlnI	CCTAGG	1 cut(s)	359
BlsI	GCNGC	3 cut(s)	379, 614, 731
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	80, 584
BmiI	GGNNCC	2 cut(s)	45, 783
BmsI	GCATC	3 cut(s)	355, 804, 880
BpiI	GAAGAC	2 cut(s)	114, 441
BpmI	CTGGAG	2 cut(s)	208, 209
BpuEI	CTTGAG	1 cut(s)	693
BsaAI	YACGTR	1 cut(s)	293
BsaHI	GRCGYC	2 cut(s)	107, 116
BsaJI	CCNNGG	2 cut(s)	90, 359
BsaWI	WCCGGW	2 cut(s)	46, 196
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 534, 650, 886
Bse118I	RCCGGY	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	644
BseAI	TCCGGA	1 cut(s)	46
BseDI	CCNNGG	2 cut(s)	90, 359
BseGI	GGATG	4 cut(s)	382, 516, 875, 895
BseLI	CCNNNNNNNGG	4 cut(s)	28, 534, 650, 886
BseMII	CTCAG	2 cut(s)	151, 922
BseNI	ACTGG	1 cut(s)	644
BseXI	GCAGC	3 cut(s)	364, 624, 741
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	4 cut(s)	82, 364, 487, 586
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	3 cut(s)	47, 197, 428
BslFI	GGGAC	2 cut(s)	349, 498
BslI	CCNNNNNNNGG	4 cut(s)	28, 534, 650, 886
BsmFI	GGGAC	2 cut(s)	349, 498
BsnI	GGCC	4 cut(s)	82, 364, 487, 586
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
Bsp68I	TCGCGA	1 cut(s)	240
BspACI	CCGC	4 cut(s)	72, 128, 425, 893
BspANI	GGCC	4 cut(s)	82, 364, 487, 586
BspCNI	CTCAG	2 cut(s)	150, 921
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	45, 783
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	6 cut(s)	38, 51, 141, 776, 789, 864
BspQI	GCTCTTC	1 cut(s)	236
BsrFI	RCCGGY	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	644
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	90, 359
BssMI	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
BssNAI	GTATAC	1 cut(s)	715
BssNI	GRCGYC	2 cut(s)	107, 116
BssSI	CACGAG	2 cut(s)	572, 944
BssT1I	CCWWGG	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	715
Bst2BI	CACGAG	2 cut(s)	572, 944
Bst4CI	ACNGT	6 cut(s)	280, 595, 608, 802, 810, 867
Bst6I	CTCTTC	1 cut(s)	236
BstACI	GRCGYC	2 cut(s)	107, 116
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	344, 588
BstDEI	CTNAG	2 cut(s)	137, 908
BstENI	CCTNNNNNAGG	1 cut(s)	26
BstF5I	GGATG	4 cut(s)	382, 516, 875, 895
BstFNI	CGCG	1 cut(s)	240
BstKTI	GATC	6 cut(s)	46, 136, 238, 664, 784, 859
BstMBI	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
BstMCI	CGRYCG	1 cut(s)	238
BstSFI	CTRYAG	1 cut(s)	522
BstSNI	TACGTA	1 cut(s)	293
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	364, 624, 741
BstV2I	GAAGAC	2 cut(s)	114, 441
BstX2I	RGATCY	3 cut(s)	43, 133, 781
BstYI	RGATCY	3 cut(s)	43, 133, 781
BstZ17I	GTATAC	1 cut(s)	715
BsuI	GTATCC	3 cut(s)	16, 399, 889
BsuRI	GGCC	4 cut(s)	82, 364, 487, 586
BtsCI	GGATG	4 cut(s)	382, 516, 875, 895
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 916
BtuMI	TCGCGA	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	344, 588
CaiI	CAGNNNCTG	2 cut(s)	593, 769
Cfr10I	RCCGGY	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	80, 584
CseI	GACGC	2 cut(s)	96, 721
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	5 cut(s)	61, 299, 441, 680, 829
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	137, 908
DpnI	GATC	6 cut(s)	45, 135, 237, 663, 783, 858
DpnII	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	3 cut(s)	87, 143, 414
Eco105I	TACGTA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	791
Eco88I	CYCGRG	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	359
EcoT22I	ATGCAT	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	5 cut(s)	64, 302, 444, 683, 832
FaqI	GGGAC	2 cut(s)	349, 498
FatI	CATG	5 cut(s)	60, 298, 440, 679, 828
FauNDI	CATATG	1 cut(s)	759
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	1 cut(s)	714
Fnu4HI	GCNGC	3 cut(s)	378, 613, 730
FokI	GGATG	4 cut(s)	369, 503, 862, 902
Fsp4HI	GCNGC	3 cut(s)	378, 613, 730
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	3 cut(s)	378, 613, 730
GsuI	CTGGAG	2 cut(s)	208, 209
HaeIII	GGCC	4 cut(s)	82, 364, 487, 586
HapII	CCGG	3 cut(s)	47, 197, 428
HgaI	GACGC	2 cut(s)	96, 721
Hin1I	GRCGYC	2 cut(s)	107, 116
Hin1II	CATG	5 cut(s)	64, 302, 444, 683, 832
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	9 cut(s)	75, 148, 467, 491, 511, 575, 720, 766, 904
HpaII	CCGG	3 cut(s)	47, 197, 428
Hpy166II	GTNNAC	4 cut(s)	55, 111, 670, 715
Hpy188I	TCNGA	3 cut(s)	153, 771, 786
Hpy188III	TCNNGA	6 cut(s)	47, 177, 239, 572, 698, 845
Hpy8I	GTNNAC	4 cut(s)	55, 111, 670, 715
Hpy99I	CGWCG	3 cut(s)	106, 118, 121
HpyCH4III	ACNGT	6 cut(s)	280, 595, 608, 802, 810, 867
HpyCH4IV	ACGT	3 cut(s)	51, 116, 292
HpyCH4V	TGCA	5 cut(s)	302, 553, 612, 683, 763
HpyF3I	CTNAG	2 cut(s)	137, 908
HpySE526I	ACGT	3 cut(s)	51, 116, 292
Hsp92I	GRCGYC	2 cut(s)	107, 116
Hsp92II	CATG	5 cut(s)	64, 302, 444, 683, 832
Kpn2I	TCCGGA	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	2 cut(s)	189, 199
Lsp1109I	GCAGC	3 cut(s)	364, 624, 741
LweI	GCATC	3 cut(s)	355, 804, 880
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	3 cut(s)	51, 116, 292
MaeIII	GTNAC	4 cut(s)	94, 748, 804, 932
MalI	GATC	6 cut(s)	45, 135, 237, 663, 783, 858
MboI	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
MboII	GAAGA	7 cut(s)	114, 157, 223, 441, 686, 784, 787
MflI	RGATCY	3 cut(s)	43, 133, 781
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	832
MlyI	GAGTC	3 cut(s)	69, 520, 584
MnlI	CCTC	9 cut(s)	22, 100, 124, 224, 233, 250, 363, 402, 847
Mph1103I	ATGCAT	1 cut(s)	685
MroI	TCCGGA	1 cut(s)	46
MseI	TTAA	2 cut(s)	477, 958
MslI	CAYNNNNRTG	1 cut(s)	678
MspI	CCGG	3 cut(s)	47, 197, 428
MvnI	CGCG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
NlaIII	CATG	5 cut(s)	64, 302, 444, 683, 832
NlaIV	GGNNCC	2 cut(s)	45, 783
NmuCI	GTSAC	2 cut(s)	94, 932
NruI	TCGCGA	1 cut(s)	240
NsiI	ATGCAT	1 cut(s)	685
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 110
PfeI	GAWTC	6 cut(s)	148, 467, 491, 720, 766, 904
PflFI	GACNNNGTC	2 cut(s)	106, 118
PflMI	CCANNNNNTGG	3 cut(s)	534, 650, 886
PkrI	GCNGC	3 cut(s)	379, 614, 731
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	3 cut(s)	69, 519, 583
PpsI	GAGTC	3 cut(s)	69, 519, 583
Ppu21I	YACGTR	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	45, 783
PspPI	GGNCC	2 cut(s)	80, 584
PstNI	CAGNNNCTG	2 cut(s)	593, 769
PsuI	RGATCY	3 cut(s)	43, 133, 781
PsyI	GACNNNGTC	2 cut(s)	106, 118
PvuI	CGATCG	1 cut(s)	238
RruI	TCGCGA	1 cut(s)	240
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	678
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	477, 958
SatI	GCNGC	3 cut(s)	378, 613, 730
Sau3AI	GATC	6 cut(s)	43, 133, 235, 661, 781, 856
Sau96I	GGNCC	2 cut(s)	80, 584
SchI	GAGTC	3 cut(s)	69, 520, 584
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	3 cut(s)	355, 804, 880
SfcI	CTRYAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	1 cut(s)	708
SmoI	CTYRAG	1 cut(s)	708
SnaBI	TACGTA	1 cut(s)	293
Sse9I	AATT	1 cut(s)	832
SsiI	CCGC	4 cut(s)	72, 128, 425, 893
SspMI	CTAG	1 cut(s)	360
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	6 cut(s)	280, 595, 608, 802, 810, 867
TaiI	ACGT	3 cut(s)	54, 119, 295
TaqI	TCGA	3 cut(s)	216, 234, 852
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	1 cut(s)	832
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	6 cut(s)	148, 467, 491, 720, 766, 904
Tru1I	TTAA	2 cut(s)	477, 958
Tru9I	TTAA	2 cut(s)	477, 958
TscAI	CASTG	2 cut(s)	103, 916
TseFI	GTSAC	2 cut(s)	94, 932
TseI	GCWGC	3 cut(s)	377, 612, 729
Tsp45I	GTSAC	2 cut(s)	94, 932
TspDTI	ATGAA	7 cut(s)	253, 441, 483, 712, 845, 864, 930
TspGWI	ACGGA	2 cut(s)	375, 732
TspRI	CASTG	2 cut(s)	103, 916
Tth111I	GACNNNGTC	2 cut(s)	106, 118
Van91I	CCANNNNNTGG	3 cut(s)	534, 650, 886
XagI	CCTNNNNNAGG	1 cut(s)	26
XapI	RAATTY	1 cut(s)	832
XmaJI	CCTAGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	714
XspI	CTAG	1 cut(s)	360
ZraI	GACGTC	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.