pycom01g21950
MYB Family

Transcription factor ASG4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0011669
Physical Location & Seq
Reverse (-)
19736435 .. 19739229
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g21950.2

Sequence Viewer

Length: 975 bp
ATGGTATCCAAAAACCCGAACCTGCCAGAGGGCTTGTACTTGGATCCGGACGTAAACGGCATGGCGTTGCCAGGACTCGGGCCGTTCGCCCCGGTCACTGCGACGGCGTCAACGACCTCGTCTTCGGCGGAGGATCTCAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGAGCGAACCGGAGCACGACAAGTTCCTCGAAGCCCTCCAGCTCTTCGATCGCGATTGGAAAAAGATTGAAGCTTTCATTGGGTCAAAGACAGTCATACAGATACGTAGTCATGCACAGAAGTATTTTCTGAAGGTTCAAAAGAATGGGACAAGCGAGCATCTACCTCCCCCTAGGCCAAAAAGGAAAGCTGCTCATCCGTATCCTCAAAAAGCTTCAAAAAATGCTTTGGCACTTCCGCCAGTATCTGGGTCATGTCTATCTTCGTCTGCTTTACTTGAATCTGGGTTTAATCAAGGGCCAGATTCATCATCAGTGCTTATGAGTCCCATCCCTGGCCCTGTAGCCCCTTCTTGGACTAATGGTTCTGTGCAATCAGCCAATCCATCTCCTGAGTCCAAAGGTGTTTCGGGGCCAGCAACTGTGCCGAACAACAGTTGCAGCACCACAGAAAGCACCCTTAAAGCTCAACCAGTTGGTGGAACAACAGATCAAGTGAACCATAGCCATGCATTGAGAGTTCTTCCCGACTTTACTCAAGTATACGGATTCATTGGCAGTGTCTTTGACCCCAATGTTACAGGTCATATGCAGAATCTGAAGAAGATGGATCCGATAGATGTTGAAACGGTATTACTGTTGATGCGAAACCTGTCCATGAATTTGACCAATCCTGATTTCGAGGATCATAGACAGTTGCTTTCATCCTACAAGATGGATGCGGATACAGGGAATCTCAGTGATGAAACTAAAAGCCGTCGTGACAATCAACATGAGAAAGTTGCTTAA

Protein Analysis

325

Amino Acids

35.2

Weight (kDa)

7.78

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011669)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52660 AT5G52660
fragaria_vesca FvH4_7g30300
malus_domestica MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica Prupe.2G301500_v2.0.a1
pyrus_communis pycom01g21950 pycom07g25410
rosa_chinensis RchiOBHm_Chr1g0378441
rosa_laevigata RLG00000026436
rosa_multiflora Rmu_sc0000938.1_g000005
rosa_roxburghii Rroxscaffold_4G00280460
rosa_rugosa Rorug01G0408700 Rorug01G0408800
rosa_samantha Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana Rw1G037660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB7I CCANNNNNTGG 2 cut(s) 434, 665
AccI GTMKAC 1 cut(s) 729
AccII CGCG 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 46
AciI CCGC 3 cut(s) 128, 425, 908
AclWI GGATC 6 cut(s) 38, 51, 141, 791, 804, 879
AcsI RAATTY 1 cut(s) 847
AcuI CTGAAG 2 cut(s) 338, 806
AcyI GRCGYC 1 cut(s) 107
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 6 cut(s) 28, 77, 434, 521, 540, 665
AgsI TTSAA 5 cut(s) 257, 326, 405, 467, 812
AjnI CCWGG 2 cut(s) 70, 520
AjuI GAANNNNNNNTTGG 4 cut(s) 249, 281, 848, 880
AloI GAACNNNNNNTCC 2 cut(s) 535, 567
AluBI AGCT 6 cut(s) 186, 229, 260, 377, 401, 653
AluI AGCT 6 cut(s) 186, 229, 260, 377, 401, 653
Alw21I GWGCWC 1 cut(s) 204
AlwI GGATC 6 cut(s) 38, 51, 141, 791, 804, 879
AlwNI CAGNNNCTG 3 cut(s) 434, 608, 784
Ama87I CYCGRG 1 cut(s) 77
Aor13HI TCCGGA 1 cut(s) 46
AoxI GGCC 5 cut(s) 80, 362, 485, 523, 599
ApeKI GCWGC 2 cut(s) 377, 627
ApoI RAATTY 1 cut(s) 847
ArsI GACNNNNNNTTYG 2 cut(s) 106, 138
AspA2I CCTAGG 1 cut(s) 359
AspS9I GGNCC 4 cut(s) 80, 485, 524, 599
AsuC2I CCSGG 1 cut(s) 92
AvaI CYCGRG 1 cut(s) 77
AvrII CCTAGG 1 cut(s) 359
BamHI GGATCC 2 cut(s) 43, 796
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 2 cut(s) 364, 639
BccI CCATC 4 cut(s) 524, 580, 787, 895
BceAI ACGGC 4 cut(s) 67, 73, 120, 927
BciT130I CCWGG 2 cut(s) 72, 522
BciVI GTATCC 3 cut(s) 16, 399, 904
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 30
BfuI GTATCC 3 cut(s) 16, 399, 904
BisI GCNGC 2 cut(s) 378, 628
BlnI CCTAGG 1 cut(s) 359
BlsI GCNGC 2 cut(s) 379, 629
Bme1390I CCNGG 3 cut(s) 72, 92, 522
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 4 cut(s) 80, 485, 524, 599
BmiI GGNNCC 3 cut(s) 45, 600, 798
BmrFI CCNGG 3 cut(s) 72, 92, 522
BmsI GCATC 3 cut(s) 355, 819, 895
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 2 cut(s) 208, 209
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 92
BsaAI YACGTR 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 90, 359, 520
BsaWI WCCGGW 2 cut(s) 46, 196
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 77, 434, 521, 540, 665
Bse1I ACTGG 2 cut(s) 428, 659
BseAI TCCGGA 1 cut(s) 46
BseBI CCWGG 2 cut(s) 72, 522
BseDI CCNNGG 3 cut(s) 90, 359, 520
BseGI GGATG 4 cut(s) 382, 516, 890, 910
BseLI CCNNNNNNNGG 6 cut(s) 28, 77, 434, 521, 540, 665
BseMII CTCAG 3 cut(s) 151, 570, 937
BseNI ACTGG 2 cut(s) 428, 659
BseXI GCAGC 2 cut(s) 364, 639
Bsh1236I CGCG 1 cut(s) 240
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 5 cut(s) 82, 364, 487, 525, 601
BsiEI CGRYCG 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 3 cut(s) 47, 92, 197
BslFI GGGAC 2 cut(s) 349, 498
BslI CCNNNNNNNGG 6 cut(s) 28, 77, 434, 521, 540, 665
BsmFI GGGAC 2 cut(s) 349, 498
BsnI GGCC 5 cut(s) 82, 364, 487, 525, 601
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 46
Bsp143I GATC 6 cut(s) 43, 133, 235, 676, 796, 871
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 3 cut(s) 128, 425, 908
BspANI GGCC 5 cut(s) 82, 364, 487, 525, 601
BspCNI CTCAG 3 cut(s) 150, 571, 936
BspEI TCCGGA 1 cut(s) 46
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 3 cut(s) 45, 600, 798
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 6 cut(s) 38, 51, 141, 791, 804, 879
BspQI GCTCTTC 1 cut(s) 236
BsrI ACTGG 2 cut(s) 428, 659
BssECI CCNNGG 3 cut(s) 90, 359, 520
BssMI GATC 6 cut(s) 43, 133, 235, 676, 796, 871
BssNAI GTATAC 1 cut(s) 730
BssNI GRCGYC 1 cut(s) 107
BssT1I CCWWGG 1 cut(s) 359
Bst1107I GTATAC 1 cut(s) 730
Bst2UI CCWGG 2 cut(s) 72, 522
Bst4CI ACNGT 6 cut(s) 280, 610, 623, 817, 825, 882
Bst6I CTCTTC 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 344, 603
BstDEI CTNAG 3 cut(s) 137, 579, 923
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 4 cut(s) 382, 516, 890, 910
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 6 cut(s) 46, 136, 238, 679, 799, 874
BstMBI GATC 6 cut(s) 43, 133, 235, 676, 796, 871
BstMCI CGRYCG 1 cut(s) 238
BstNI CCWGG 2 cut(s) 72, 522
BstSCI CCNGG 3 cut(s) 70, 90, 520
BstSFI CTRYAG 1 cut(s) 528
BstSNI TACGTA 1 cut(s) 293
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 364, 639
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 3 cut(s) 43, 133, 796
BstYI RGATCY 3 cut(s) 43, 133, 796
BstZ17I GTATAC 1 cut(s) 730
BsuI GTATCC 3 cut(s) 16, 399, 904
BsuRI GGCC 5 cut(s) 82, 364, 487, 525, 601
BtsCI GGATG 4 cut(s) 382, 516, 890, 910
BtsI GCAGTG 2 cut(s) 96, 751
BtsIMutI CAGTG 4 cut(s) 96, 507, 751, 931
BtuMI TCGCGA 1 cut(s) 240
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 344, 603
CaiI CAGNNNCTG 3 cut(s) 434, 608, 784
Cfr13I GGNCC 4 cut(s) 80, 485, 524, 599
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 37
CviAII CATG 6 cut(s) 61, 299, 441, 695, 844, 959
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 137, 579, 923
DpnI GATC 6 cut(s) 45, 135, 237, 678, 798, 873
DpnII GATC 6 cut(s) 43, 133, 235, 676, 796, 871
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
EciI GGCGGA 2 cut(s) 143, 414
Eco105I TACGTA 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 359
Eco57I CTGAAG 2 cut(s) 338, 806
Eco88I CYCGRG 1 cut(s) 77
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoRII CCWGG 2 cut(s) 70, 520
EcoT14I CCWWGG 1 cut(s) 359
EcoT22I ATGCAT 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 359
FaeI CATG 6 cut(s) 64, 302, 444, 698, 847, 962
FaqI GGGAC 2 cut(s) 349, 498
FatI CATG 6 cut(s) 60, 298, 440, 694, 843, 958
FauNDI CATATG 1 cut(s) 774
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 2 cut(s) 378, 628
FokI GGATG 4 cut(s) 369, 503, 877, 917
Fsp4HI GCNGC 2 cut(s) 378, 628
FspBI CTAG 1 cut(s) 360
GluI GCNGC 2 cut(s) 378, 628
GsuI CTGGAG 2 cut(s) 208, 209
HaeIII GGCC 5 cut(s) 82, 364, 487, 525, 601
HapII CCGG 3 cut(s) 47, 92, 197
HgaI GACGC 1 cut(s) 96
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 6 cut(s) 64, 302, 444, 698, 847, 962
HincII GTYRAC 1 cut(s) 111
HindII GTYRAC 1 cut(s) 111
HindIII AAGCTT 2 cut(s) 258, 399
HinfI GANTC 9 cut(s) 75, 148, 467, 491, 511, 581, 735, 781, 919
HpaII CCGG 3 cut(s) 47, 92, 197
Hpy166II GTNNAC 4 cut(s) 55, 111, 685, 730
Hpy188I TCNGA 4 cut(s) 153, 318, 786, 801
Hpy188III TCNNGA 7 cut(s) 47, 177, 239, 578, 713, 860, 947
Hpy8I GTNNAC 4 cut(s) 55, 111, 685, 730
Hpy99I CGWCG 2 cut(s) 106, 948
HpyAV CCTTC 2 cut(s) 313, 546
HpyCH4III ACNGT 6 cut(s) 280, 610, 623, 817, 825, 882
HpyCH4IV ACGT 2 cut(s) 51, 292
HpyCH4V TGCA 5 cut(s) 302, 559, 627, 698, 778
HpyF3I CTNAG 3 cut(s) 137, 579, 923
HpySE526I ACGT 2 cut(s) 51, 292
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 6 cut(s) 64, 302, 444, 698, 847, 962
Kpn2I TCCGGA 1 cut(s) 46
Kzo9I GATC 6 cut(s) 43, 133, 235, 676, 796, 871
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 189, 199
Lsp1109I GCAGC 2 cut(s) 364, 639
LweI GCATC 3 cut(s) 355, 819, 895
MaeI CTAG 1 cut(s) 360
MaeII ACGT 2 cut(s) 51, 292
MaeIII GTNAC 3 cut(s) 94, 763, 947
MalI GATC 6 cut(s) 45, 135, 237, 678, 798, 873
MboI GATC 6 cut(s) 43, 133, 235, 676, 796, 871
MboII GAAGA 7 cut(s) 114, 157, 223, 441, 701, 799, 802
MflI RGATCY 3 cut(s) 43, 133, 796
MhlI GDGCHC 1 cut(s) 204
MluCI AATT 1 cut(s) 847
MlyI GAGTC 3 cut(s) 69, 520, 590
MnlI CCTC 8 cut(s) 22, 124, 127, 224, 233, 363, 402, 862
Mph1103I ATGCAT 1 cut(s) 700
MroI TCCGGA 1 cut(s) 46
MseI TTAA 3 cut(s) 477, 648, 973
MslI CAYNNNNRTG 1 cut(s) 693
MspI CCGG 3 cut(s) 47, 92, 197
MspR9I CCNGG 3 cut(s) 72, 92, 522
MvaI CCWGG 2 cut(s) 72, 522
MvnI CGCG 1 cut(s) 240
NciI CCSGG 1 cut(s) 92
NdeI CATATG 1 cut(s) 774
NdeII GATC 6 cut(s) 43, 133, 235, 676, 796, 871
NlaIII CATG 6 cut(s) 64, 302, 444, 698, 847, 962
NlaIV GGNNCC 3 cut(s) 45, 600, 798
NmuCI GTSAC 2 cut(s) 94, 947
NruI TCGCGA 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 700
PciSI GCTCTTC 1 cut(s) 236
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 6 cut(s) 148, 467, 491, 735, 781, 919
PflFI GACNNNGTC 2 cut(s) 106, 118
PflMI CCANNNNNTGG 2 cut(s) 434, 665
PkrI GCNGC 2 cut(s) 379, 629
Ple19I CGATCG 1 cut(s) 238
PleI GAGTC 3 cut(s) 69, 519, 589
PpsI GAGTC 3 cut(s) 69, 519, 589
Ppu21I YACGTR 1 cut(s) 293
Psp6I CCWGG 2 cut(s) 70, 520
PspGI CCWGG 2 cut(s) 70, 520
PspN4I GGNNCC 3 cut(s) 45, 600, 798
PspPI GGNCC 4 cut(s) 80, 485, 524, 599
PstNI CAGNNNCTG 3 cut(s) 434, 608, 784
PsuI RGATCY 3 cut(s) 43, 133, 796
PsyI GACNNNGTC 2 cut(s) 106, 118
PvuI CGATCG 1 cut(s) 238
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
RseI CAYNNNNRTG 1 cut(s) 693
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 477, 648, 973
SatI GCNGC 2 cut(s) 378, 628
Sau3AI GATC 6 cut(s) 43, 133, 235, 676, 796, 871
Sau96I GGNCC 4 cut(s) 80, 485, 524, 599
SchI GAGTC 3 cut(s) 69, 520, 590
ScrFI CCNGG 3 cut(s) 72, 92, 522
SduI GDGCHC 1 cut(s) 204
SfaNI GCATC 3 cut(s) 355, 819, 895
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 693
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
SnaBI TACGTA 1 cut(s) 293
Sse9I AATT 1 cut(s) 847
SsiI CCGC 3 cut(s) 128, 425, 908
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 3 cut(s) 70, 90, 520
StyI CCWWGG 1 cut(s) 359
TaaI ACNGT 6 cut(s) 280, 610, 623, 817, 825, 882
TaiI ACGT 2 cut(s) 54, 295
TaqI TCGA 3 cut(s) 216, 234, 867
TasI AATT 1 cut(s) 847
TatI WGTACW 1 cut(s) 36
TfiI GAWTC 6 cut(s) 148, 467, 491, 735, 781, 919
Tru1I TTAA 3 cut(s) 477, 648, 973
Tru9I TTAA 3 cut(s) 477, 648, 973
TscAI CASTG 4 cut(s) 103, 507, 751, 931
TseFI GTSAC 2 cut(s) 94, 947
TseI GCWGC 2 cut(s) 377, 627
Tsp45I GTSAC 2 cut(s) 94, 947
TspDTI ATGAA 6 cut(s) 253, 483, 727, 860, 879, 945
TspGWI ACGGA 2 cut(s) 375, 747
TspRI CASTG 4 cut(s) 103, 507, 751, 931
Tth111I GACNNNGTC 2 cut(s) 106, 118
Van91I CCANNNNNTGG 2 cut(s) 434, 665
XagI CCTNNNNNAGG 1 cut(s) 26
XapI RAATTY 1 cut(s) 847
XmaJI CCTAGG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 729
XspI CTAG 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.