Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Forward (+)

3020323 .. 3023053

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTATCCAAAAACCCGACTCCGCCCGACGGCCTGTACTTGGATCCGAACGAAATGGCGTTACCCGGACTCGGCCCATTCGCTTCTGTCGCCACGGCGGCGACCACCACGGCGTCGACGACCTCGTCGTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCCGAGCACGATAAGTTCCTCGAAGCTCTTCAGCTCTTTGACCGGGATTGGAAGAAGATTGAAGCTTTTATCGGGTCGAAGACAGTTATACAGATACGTAGTCATGCACAGAAGTATTTCCTGAAGGTTCAGAAGAATGGGACAAGCGAGCATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCCTACCCTCAGAAAGCCTCAAAAAATGTGCTGGGACTCCCACAAGTGTCTGGTTCATGTCAATCTTCATCAGCGTTACTTGAATCTGGGTTCATCCAAAGGCCAGATTCATCATCGGTGCTTATTAGTCCCATTCCTGGTGGTGTAGTCCCTTCTTGGCCCAATAGTTCTGTGCAAACAGCCAACGTATCACATGAGACCAAAGGGCCAGCTAAGCCGAGCTGCAATAGTGCAGAAAGCACTCCAAAAGCTCAACCAGCCAGTGAAACAACTGATCAAGGGATTCGCAGCCTTAATCATAACCATCCATTGAGAGTTCTGCCTGACTTTTGTCAAGTATACAGCTTCATTGGCGGTGTCTTTGACCCTAATACTTCAGGGCATCTGCAGAAACTGAAGAAGATGGACCCTATAGATGTTGAAACGGTGTTACTGTTGATGAGAAATCTATCCATGAATTTGACAAGTCCCGATTTTGAGGATCATAGAAAGTTGCTTTCATCCTACAAGATTGATGCCGATACAACAGATCACCTTGATGCAAGTAAAAGCCTTCATAGCGACCAACAAAAGAATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

324

Amino Acids

35.44

Weight (kDa)

8.79

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	62 - 107	1.4e-10	Myb-like DNA-binding domain
RVE6	PF24904	237 - 299	1.2e-37	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	124, 127
AccI	GTMKAC	2 cut(s)	116, 729
AciI	CCGC	4 cut(s)	23, 98, 134, 744
AclWI	GGATC	4 cut(s)	38, 51, 147, 879
AcsI	RAATTY	1 cut(s)	847
AcuI	CTGAAG	4 cut(s)	215, 344, 750, 806
AcyI	GRCGYC	1 cut(s)	113
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 527
AgsI	TTSAA	3 cut(s)	263, 473, 812
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	9 cut(s)	192, 227, 235, 266, 383, 602, 612, 641, 735
AluI	AGCT	9 cut(s)	192, 227, 235, 266, 383, 602, 612, 641, 735
Alw21I	GWGCWC	1 cut(s)	210
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	4 cut(s)	38, 51, 147, 879
AlwNI	CAGNNNCTG	1 cut(s)	784
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	6 cut(s)	31, 73, 368, 491, 548, 596
ApeKI	GCWGC	2 cut(s)	612, 678
ApoI	RAATTY	1 cut(s)	847
Asp700I	GAANNNNTTC	2 cut(s)	228, 317
AspA2I	CCTAGG	1 cut(s)	365
AspS9I	GGNCC	4 cut(s)	74, 549, 596, 796
AsuC2I	CCSGG	2 cut(s)	66, 245
AsuHPI	GGTGA	2 cut(s)	380, 914
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	796
AvrII	CCTAGG	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	2 cut(s)	599, 690
BccI	CCATC	2 cut(s)	702, 787
BceAI	ACGGC	3 cut(s)	46, 111, 126
BciT130I	CCWGG	1 cut(s)	528
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	664
BcnI	CCSGG	2 cut(s)	66, 245
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	2 cut(s)	776, 801
BfuI	GTATCC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	3 cut(s)	99, 613, 679
BlnI	CCTAGG	1 cut(s)	365
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	3 cut(s)	100, 614, 680
Bme1390I	CCNGG	3 cut(s)	66, 245, 528
Bme18I	GGWCC	1 cut(s)	796
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	4 cut(s)	74, 549, 596, 796
BmiI	GGNNCC	2 cut(s)	45, 798
BmrFI	CCNGG	3 cut(s)	66, 245, 528
BmsI	GCATC	4 cut(s)	361, 781, 895, 919
BoxI	GACNNNNGTC	1 cut(s)	720
BpiI	GAAGAC	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	603
BpuMI	CCSGG	2 cut(s)	66, 245
BsaAI	YACGTR	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	93, 108, 365
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 527
Bse1I	ACTGG	1 cut(s)	651
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	3 cut(s)	93, 108, 365
BseGI	GGATG	3 cut(s)	483, 694, 890
BseLI	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 527
BseMII	CTCAG	3 cut(s)	134, 189, 413
BseNI	ACTGG	1 cut(s)	651
BseXI	GCAGC	2 cut(s)	599, 690
BseYI	CCCAGC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	6 cut(s)	33, 75, 370, 493, 550, 598
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	2 cut(s)	66, 244
BslFI	GGGAC	5 cut(s)	355, 438, 504, 524, 843
BslI	CCNNNNNNNGG	4 cut(s)	29, 40, 71, 527
BsmAI	GTCTC	1 cut(s)	581
BsmFI	GGGAC	5 cut(s)	355, 438, 504, 524, 843
BsnI	GGCC	6 cut(s)	33, 75, 370, 493, 550, 598
Bso31I	GGTCTC	1 cut(s)	581
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	204, 210
Bsp143I	GATC	5 cut(s)	43, 139, 664, 871, 919
Bsp1720I	GCTNAGC	1 cut(s)	603
BspACI	CCGC	4 cut(s)	23, 98, 134, 744
BspANI	GGCC	6 cut(s)	33, 75, 370, 493, 550, 598
BspCNI	CTCAG	3 cut(s)	135, 190, 412
BspLI	GGNNCC	2 cut(s)	45, 798
BspMAI	CTGCAG	1 cut(s)	780
BspPI	GGATC	4 cut(s)	38, 51, 147, 879
BspQI	GCTCTTC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	651
BssECI	CCNNGG	3 cut(s)	93, 108, 365
BssMI	GATC	5 cut(s)	43, 139, 664, 871, 919
BssNAI	GTATAC	1 cut(s)	730
BssNI	GRCGYC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	365
Bst1107I	GTATAC	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	3 cut(s)	286, 817, 825
Bst6I	CTCTTC	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	350, 600
BstDEI	CTNAG	4 cut(s)	143, 198, 399, 603
BstDSI	CCRYGG	2 cut(s)	93, 108
BstF5I	GGATG	3 cut(s)	483, 694, 890
BstKTI	GATC	5 cut(s)	46, 142, 667, 874, 922
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	5 cut(s)	43, 139, 664, 871, 919
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 98, 604, 647, 741, 948
BstNI	CCWGG	1 cut(s)	528
BstPAI	GACNNNNGTC	1 cut(s)	720
BstSCI	CCNGG	3 cut(s)	64, 243, 526
BstSFI	CTRYAG	2 cut(s)	776, 801
BstSNI	TACGTA	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	599, 690
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	43, 139
BstYI	RGATCY	2 cut(s)	43, 139
BstZ17I	GTATAC	1 cut(s)	730
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	6 cut(s)	33, 75, 370, 493, 550, 598
BtgI	CCRYGG	2 cut(s)	93, 108
BtsCI	GGATG	3 cut(s)	483, 694, 890
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	2 cut(s)	350, 600
CaiI	CAGNNNCTG	1 cut(s)	784
Cfr13I	GGNCC	4 cut(s)	74, 549, 596, 796
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	4 cut(s)	305, 447, 584, 844
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	4 cut(s)	143, 198, 399, 603
DpnI	GATC	5 cut(s)	45, 141, 666, 873, 921
DpnII	GATC	5 cut(s)	43, 139, 664, 871, 919
DrdI	GACNNNNNNGTC	2 cut(s)	124, 127
DseDI	GACNNNNNNGTC	2 cut(s)	124, 127
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EciI	GGCGGA	2 cut(s)	12, 149
Eco105I	TACGTA	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	581
Eco47I	GGWCC	1 cut(s)	796
Eco57I	CTGAAG	4 cut(s)	215, 344, 750, 806
Eco88I	CYCGRG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	365
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	365
FaeI	CATG	4 cut(s)	308, 450, 587, 847
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FaqI	GGGAC	5 cut(s)	355, 438, 504, 524, 843
FatI	CATG	4 cut(s)	304, 446, 583, 843
FbaI	TGATCA	1 cut(s)	664
FblI	GTMKAC	2 cut(s)	116, 729
Fnu4HI	GCNGC	3 cut(s)	99, 613, 679
FokI	GGATG	3 cut(s)	470, 681, 877
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	3 cut(s)	99, 613, 679
FspBI	CTAG	1 cut(s)	366
GluI	GCNGC	3 cut(s)	99, 613, 679
GsaI	CCCAGC	1 cut(s)	425
HaeIII	GGCC	6 cut(s)	33, 75, 370, 493, 550, 598
HapII	CCGG	2 cut(s)	66, 244
HgaI	GACGC	1 cut(s)	102
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	4 cut(s)	308, 450, 587, 847
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	2 cut(s)	264, 381
HinfI	GANTC	7 cut(s)	19, 69, 154, 426, 473, 497, 673
HpaII	CCGG	2 cut(s)	66, 244
HphI	GGTGA	2 cut(s)	380, 914
Hpy166II	GTNNAC	2 cut(s)	117, 730
Hpy188I	TCNGA	5 cut(s)	48, 144, 159, 333, 402
Hpy188III	TCNNGA	3 cut(s)	183, 322, 860
Hpy8I	GTNNAC	2 cut(s)	117, 730
Hpy99I	CGWCG	5 cut(s)	32, 118, 121, 130, 133
HpyAV	CCTTC	3 cut(s)	319, 552, 953
HpyCH4III	ACNGT	3 cut(s)	286, 817, 825
HpyCH4IV	ACGT	2 cut(s)	298, 576
HpyCH4V	TGCA	6 cut(s)	308, 565, 615, 623, 778, 932
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 98, 604, 647, 741, 948
HpyF3I	CTNAG	4 cut(s)	143, 198, 399, 603
HpySE526I	ACGT	2 cut(s)	298, 576
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	4 cut(s)	308, 450, 587, 847
Ksp22I	TGATCA	1 cut(s)	664
Kzo9I	GATC	5 cut(s)	43, 139, 664, 871, 919
LguI	GCTCTTC	1 cut(s)	234
Lsp1109I	GCAGC	2 cut(s)	599, 690
LweI	GCATC	4 cut(s)	361, 781, 895, 919
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	298, 576
MaeIII	GTNAC	3 cut(s)	60, 465, 819
MalI	GATC	5 cut(s)	45, 141, 666, 873, 921
MboI	GATC	5 cut(s)	43, 139, 664, 871, 919
MboII	GAAGA	9 cut(s)	163, 221, 265, 268, 292, 346, 447, 799, 802
MflI	RGATCY	2 cut(s)	43, 139
MhlI	GDGCHC	2 cut(s)	204, 210
MluCI	AATT	1 cut(s)	847
MlyI	GAGTC	3 cut(s)	13, 63, 420
MnlI	CCTC	7 cut(s)	130, 133, 230, 369, 408, 418, 862
MroXI	GAANNNNTTC	2 cut(s)	228, 317
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	927
MspI	CCGG	2 cut(s)	66, 244
MspR9I	CCNGG	3 cut(s)	66, 245, 528
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	6 cut(s)	89, 98, 604, 647, 741, 948
NciI	CCSGG	2 cut(s)	66, 245
NdeII	GATC	5 cut(s)	43, 139, 664, 871, 919
NlaIII	CATG	4 cut(s)	308, 450, 587, 847
NlaIV	GGNNCC	2 cut(s)	45, 798
NmeAIII	GCCGAG	2 cut(s)	51, 633
PciSI	GCTCTTC	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	3 cut(s)	116, 122, 125
PdmI	GAANNNNTTC	2 cut(s)	228, 317
PfeI	GAWTC	4 cut(s)	154, 473, 497, 673
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	100, 614, 680
PleI	GAGTC	3 cut(s)	13, 63, 420
PpsI	GAGTC	3 cut(s)	13, 63, 420
Ppu21I	YACGTR	1 cut(s)	299
PshAI	GACNNNNGTC	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	45, 798
PspPI	GGNCC	4 cut(s)	74, 549, 596, 796
PstI	CTGCAG	1 cut(s)	780
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	2 cut(s)	43, 139
PsyI	GACNNNGTC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	927
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	3 cut(s)	99, 613, 679
Sau3AI	GATC	5 cut(s)	43, 139, 664, 871, 919
Sau96I	GGNCC	4 cut(s)	74, 549, 596, 796
SchI	GAGTC	3 cut(s)	13, 63, 420
ScrFI	CCNGG	3 cut(s)	66, 245, 528
SduI	GDGCHC	2 cut(s)	204, 210
SfaNI	GCATC	4 cut(s)	361, 781, 895, 919
SfcI	CTRYAG	2 cut(s)	776, 801
SgrDI	CGTCGACG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	1 cut(s)	927
SnaBI	TACGTA	1 cut(s)	299
Sse9I	AATT	1 cut(s)	847
SsiI	CCGC	4 cut(s)	23, 98, 134, 744
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	64, 243, 526
StyI	CCWWGG	1 cut(s)	365
TaaI	ACNGT	3 cut(s)	286, 817, 825
TaiI	ACGT	2 cut(s)	301, 579
TaqI	TCGA	3 cut(s)	116, 222, 278
TasI	AATT	1 cut(s)	847
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	4 cut(s)	154, 473, 497, 673
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	1 cut(s)	658
TseI	GCWGC	2 cut(s)	612, 678
TspDTI	ATGAA	8 cut(s)	435, 447, 472, 489, 727, 860, 879, 935
TspRI	CASTG	1 cut(s)	658
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	1 cut(s)	847
XmaJI	CCTAGG	1 cut(s)	365
XmiI	GTMKAC	2 cut(s)	116, 729
XmnI	GAANNNNTTC	2 cut(s)	228, 317
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.