Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG430200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTATCCAAAAACCCGACTCCGCCCGACGGCCTGTACTTGGATCCGAACGAAATGGCGCTACCCGGACTCGGGCCATTCGCGTCTGTCGCCACGGCGGCGACCACCACGGCGTCGACGTCGTCGTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCCTACACTATTACCAAGTCCAGAGAGAGCTGGACTGAGCCCGAGCACGATAAGTTCCTCGAAGCTCTTCAGCTCTTTGACCGGGATTGGAAGAAGATTGAAGCTTTTATTGGTTCGAAGACAGTTATACAGATACGCAGTCATGCACAGAAGTATTTCCTGAAGGTTCAGAAGAATGGGACAAGCGAGCATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCCTACCCTCAGAAAGCCTCAAAAAATGTGCTGGCACTCCCACAAGTGTCTGGTTCATGTCAATCTTCATCGGCGTTACTTGAATCTGCGTTCATCCAAAGGCCAGATTCATCATCGGTGCTTATTAGTCCCATTCCTGGTGGTGTAGTCCCTTCTTGGCCTAATAGTTCTGTGCAAACAGCCAACCTATCACATGAGACCAAAGGGCCAGCTAAGCCGAGCTGCAATAGTGCAGAAAGCACTCCAAACGCTCAACCACCCAGTGAAACAACTGATCAAGGGAATCGCAGCCTTAATCATAACCATCCATTGAGAGTTCTGCCTGACTTTTGTCAAGTATACGGCTTCATTGGCAGTGTCTTTGACCCTAATACTTCAGGGCATCTGCAGACACTGAAGAAGATGGACCCTATAGATGTTGAAACGGTGTTACTGTTGATGAGAAATCTATCCATGAATTTGACAAGTCCCGATTTTGAGGATCATAGAAAGTTGCTTTCATCCTACAAGATTGATGCCGATACAACAGATCACCTTGATGCAAGTAAAAGCCTTCATAGCGACCAACAAAAGAATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

35.36

Weight (kDa)

8.31

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	61 - 106	1.4e-10	Myb-like DNA-binding domain
RVE6	PF24904	236 - 298	3.5e-37	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	124
AatII	GACGTC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	116, 726
AccII	CGCG	1 cut(s)	83
AciI	CCGC	3 cut(s)	23, 98, 131
AclWI	GGATC	4 cut(s)	38, 51, 144, 876
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	4 cut(s)	212, 341, 747, 803
AcyI	GRCGYC	2 cut(s)	113, 119
AdeI	CACNNNGTG	1 cut(s)	650
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 524
AgsI	TTSAA	3 cut(s)	260, 470, 809
AjnI	CCWGG	1 cut(s)	523
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AluBI	AGCT	7 cut(s)	189, 224, 232, 263, 380, 599, 609
AluI	AGCT	7 cut(s)	189, 224, 232, 263, 380, 599, 609
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	4 cut(s)	38, 51, 144, 876
AlwNI	CAGNNNCTG	1 cut(s)	781
Ama87I	CYCGRG	2 cut(s)	71, 200
AoxI	GGCC	6 cut(s)	31, 74, 365, 488, 545, 593
ApeKI	GCWGC	2 cut(s)	609, 675
ApoI	RAATTY	1 cut(s)	844
Asp700I	GAANNNNTTC	2 cut(s)	225, 314
AspA2I	CCTAGG	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	74, 593, 793
AsuC2I	CCSGG	2 cut(s)	66, 242
AsuHPI	GGTGA	2 cut(s)	377, 911
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	2 cut(s)	71, 200
AvaII	GGWCC	1 cut(s)	793
AvrII	CCTAGG	1 cut(s)	362
BamHI	GGATCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	201
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	596, 687
BccI	CCATC	2 cut(s)	699, 784
BceAI	ACGGC	4 cut(s)	46, 111, 126, 745
BciT130I	CCWGG	1 cut(s)	525
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	661
BcnI	CCSGG	2 cut(s)	66, 242
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	2 cut(s)	773, 798
BfoI	RGCGCY	1 cut(s)	62
BfuI	GTATCC	1 cut(s)	16
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	3 cut(s)	99, 610, 676
BlnI	CCTAGG	1 cut(s)	362
BlpI	GCTNAGC	1 cut(s)	600
BlsI	GCNGC	3 cut(s)	100, 611, 677
Bme1390I	CCNGG	3 cut(s)	66, 242, 525
Bme18I	GGWCC	1 cut(s)	793
BmeT110I	CYCGRG	2 cut(s)	71, 200
BmgT120I	GGNCC	3 cut(s)	74, 593, 793
BmiI	GGNNCC	2 cut(s)	45, 795
BmrFI	CCNGG	3 cut(s)	66, 242, 525
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	4 cut(s)	358, 778, 892, 916
BmuI	ACTGGG	1 cut(s)	642
BoxI	GACNNNNGTC	1 cut(s)	717
BpiI	GAAGAC	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	600
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	66, 242
BsaHI	GRCGYC	2 cut(s)	113, 119
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	3 cut(s)	93, 108, 362
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 524
Bse1I	ACTGG	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	3 cut(s)	93, 108, 362
BseGI	GGATG	3 cut(s)	480, 691, 887
BseLI	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 524
BseMII	CTCAG	3 cut(s)	131, 186, 410
BseNI	ACTGG	1 cut(s)	648
BseXI	GCAGC	2 cut(s)	596, 687
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	6 cut(s)	33, 76, 367, 490, 547, 595
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	71, 200
BsiSI	CCGG	2 cut(s)	66, 241
BslFI	GGGAC	4 cut(s)	352, 501, 521, 840
BslI	CCNNNNNNNGG	5 cut(s)	29, 40, 71, 72, 524
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	4 cut(s)	352, 501, 521, 840
BsnI	GGCC	6 cut(s)	33, 76, 367, 490, 547, 595
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	2 cut(s)	71, 200
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	201, 207
Bsp143I	GATC	5 cut(s)	43, 136, 661, 868, 916
Bsp1720I	GCTNAGC	1 cut(s)	600
BspACI	CCGC	3 cut(s)	23, 98, 131
BspANI	GGCC	6 cut(s)	33, 76, 367, 490, 547, 595
BspCNI	CTCAG	3 cut(s)	132, 187, 409
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	45, 795
BspMAI	CTGCAG	1 cut(s)	777
BspPI	GGATC	4 cut(s)	38, 51, 144, 876
BspQI	GCTCTTC	1 cut(s)	231
BspT104I	TTCGAA	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	578
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	3 cut(s)	93, 108, 362
BssMI	GATC	5 cut(s)	43, 136, 661, 868, 916
BssNAI	GTATAC	1 cut(s)	727
BssNI	GRCGYC	2 cut(s)	113, 119
BssT1I	CCWWGG	1 cut(s)	362
Bst1107I	GTATAC	1 cut(s)	727
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	283, 814, 822
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	2 cut(s)	113, 119
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	347, 420, 597
BstDEI	CTNAG	4 cut(s)	140, 195, 396, 600
BstDSI	CCRYGG	2 cut(s)	93, 108
BstF5I	GGATG	3 cut(s)	480, 691, 887
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	5 cut(s)	46, 139, 664, 871, 919
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	5 cut(s)	43, 136, 661, 868, 916
BstMWI	GCNNNNNNNGC	5 cut(s)	89, 98, 601, 738, 945
BstNI	CCWGG	1 cut(s)	525
BstPAI	GACNNNNGTC	1 cut(s)	717
BstSCI	CCNGG	3 cut(s)	64, 240, 523
BstSFI	CTRYAG	2 cut(s)	773, 798
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	596, 687
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	2 cut(s)	43, 136
BstYI	RGATCY	2 cut(s)	43, 136
BstZ17I	GTATAC	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	6 cut(s)	33, 76, 367, 490, 547, 595
BtgI	CCRYGG	2 cut(s)	93, 108
BtsCI	GGATG	3 cut(s)	480, 691, 887
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	3 cut(s)	655, 748, 779
Cac8I	GCNNGC	3 cut(s)	347, 420, 597
CaiI	CAGNNNCTG	1 cut(s)	781
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	74, 593, 793
CseI	GACGC	2 cut(s)	72, 102
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	4 cut(s)	302, 444, 581, 841
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	4 cut(s)	140, 195, 396, 600
DpnI	GATC	5 cut(s)	45, 138, 663, 870, 918
DpnII	GATC	5 cut(s)	43, 136, 661, 868, 916
DraIII	CACNNNGTG	1 cut(s)	650
DrdI	GACNNNNNNGTC	1 cut(s)	124
DseDI	GACNNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
EciI	GGCGGA	2 cut(s)	12, 146
Eco130I	CCWWGG	1 cut(s)	362
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	793
Eco57I	CTGAAG	4 cut(s)	212, 341, 747, 803
Eco88I	CYCGRG	2 cut(s)	71, 200
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	362
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	362
FaeI	CATG	4 cut(s)	305, 447, 584, 844
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FaqI	GGGAC	4 cut(s)	352, 501, 521, 840
FatI	CATG	4 cut(s)	301, 443, 580, 840
FbaI	TGATCA	1 cut(s)	661
FblI	GTMKAC	2 cut(s)	116, 726
Fnu4HI	GCNGC	3 cut(s)	99, 610, 676
FokI	GGATG	3 cut(s)	467, 678, 874
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	99, 610, 676
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	99, 610, 676
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	6 cut(s)	33, 76, 367, 490, 547, 595
HapII	CCGG	2 cut(s)	66, 241
HgaI	GACGC	2 cut(s)	72, 102
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	2 cut(s)	113, 119
Hin1II	CATG	4 cut(s)	305, 447, 584, 844
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	2 cut(s)	261, 378
HinfI	GANTC	6 cut(s)	19, 69, 151, 470, 494, 670
HpaII	CCGG	2 cut(s)	66, 241
HphI	GGTGA	2 cut(s)	377, 911
Hpy166II	GTNNAC	2 cut(s)	117, 727
Hpy188I	TCNGA	5 cut(s)	48, 141, 156, 330, 399
Hpy188III	TCNNGA	3 cut(s)	180, 319, 857
Hpy8I	GTNNAC	2 cut(s)	117, 727
Hpy99I	CGWCG	6 cut(s)	32, 118, 121, 124, 127, 130
HpyAV	CCTTC	3 cut(s)	316, 549, 950
HpyCH4III	ACNGT	3 cut(s)	283, 814, 822
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	6 cut(s)	305, 562, 612, 620, 775, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	89, 98, 601, 738, 945
HpyF3I	CTNAG	4 cut(s)	140, 195, 396, 600
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	2 cut(s)	113, 119
Hsp92II	CATG	4 cut(s)	305, 447, 584, 844
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	661
Kzo9I	GATC	5 cut(s)	43, 136, 661, 868, 916
LguI	GCTCTTC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	596, 687
LweI	GCATC	4 cut(s)	358, 778, 892, 916
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	2 cut(s)	462, 816
MalI	GATC	5 cut(s)	45, 138, 663, 870, 918
MboI	GATC	5 cut(s)	43, 136, 661, 868, 916
MboII	GAAGA	9 cut(s)	160, 218, 262, 265, 289, 343, 444, 796, 799
MflI	RGATCY	2 cut(s)	43, 136
MhlI	GDGCHC	2 cut(s)	201, 207
MluCI	AATT	1 cut(s)	844
MlyI	GAGTC	2 cut(s)	13, 63
MnlI	CCTC	6 cut(s)	127, 227, 366, 405, 415, 859
MroXI	GAANNNNTTC	2 cut(s)	225, 314
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	1 cut(s)	924
MspI	CCGG	2 cut(s)	66, 241
MspR9I	CCNGG	3 cut(s)	66, 242, 525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	5 cut(s)	89, 98, 601, 738, 945
NciI	CCSGG	2 cut(s)	66, 242
NdeII	GATC	5 cut(s)	43, 136, 661, 868, 916
NlaIII	CATG	4 cut(s)	305, 447, 584, 844
NlaIV	GGNNCC	2 cut(s)	45, 795
NmeAIII	GCCGAG	1 cut(s)	630
NspV	TTCGAA	1 cut(s)	275
PciSI	GCTCTTC	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	2 cut(s)	116, 122
PdmI	GAANNNNTTC	2 cut(s)	225, 314
PfeI	GAWTC	4 cut(s)	151, 470, 494, 670
PflFI	GACNNNGTC	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	100, 611, 677
PleI	GAGTC	2 cut(s)	13, 63
PpsI	GAGTC	2 cut(s)	13, 63
PshAI	GACNNNNGTC	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	45, 795
PspPI	GGNCC	3 cut(s)	74, 593, 793
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	43, 136
PsyI	GACNNNGTC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	924
SalI	GTCGAC	1 cut(s)	115
SapI	GCTCTTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	3 cut(s)	99, 610, 676
Sau3AI	GATC	5 cut(s)	43, 136, 661, 868, 916
Sau96I	GGNCC	3 cut(s)	74, 593, 793
SchI	GAGTC	2 cut(s)	13, 63
ScrFI	CCNGG	3 cut(s)	66, 242, 525
SduI	GDGCHC	2 cut(s)	201, 207
SfaNI	GCATC	4 cut(s)	358, 778, 892, 916
SfcI	CTRYAG	2 cut(s)	773, 798
SfuI	TTCGAA	1 cut(s)	275
SgrDI	CGTCGACG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	1 cut(s)	924
Sse9I	AATT	1 cut(s)	844
SsiI	CCGC	3 cut(s)	23, 98, 131
SspMI	CTAG	1 cut(s)	363
StyD4I	CCNGG	3 cut(s)	64, 240, 523
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	283, 814, 822
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	3 cut(s)	116, 219, 275
TasI	AATT	1 cut(s)	844
TatI	WGTACW	1 cut(s)	36
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	4 cut(s)	151, 470, 494, 670
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	3 cut(s)	655, 748, 786
TseI	GCWGC	2 cut(s)	609, 675
TspDTI	ATGAA	8 cut(s)	432, 444, 469, 486, 724, 857, 876, 932
TspRI	CASTG	3 cut(s)	655, 748, 786
Tth111I	GACNNNGTC	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	1 cut(s)	844
XmaJI	CCTAGG	1 cut(s)	362
XmiI	GTMKAC	2 cut(s)	116, 726
XmnI	GAANNNNTTC	2 cut(s)	225, 314
XspI	CTAG	1 cut(s)	363
ZraI	GACGTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.