Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Reverse (-)

22108618 .. 22111923

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTATCCAAAAACCCGAACCCGCCAGAGGGCCTTTACTTGGATCCGGACGAAATGGCCTTACCGGGACTCGGTCCATTCGCCACGGCGGCGACCACCACCGCCGTGTCGACGACGACTTCGTCGGCGGAGGATCTGAGCAAGAAGATTCGGAAGCCGTACACTATCACCAAGTCCAGAGAGAGCTGGACTGAGCCCGAGCACGATAAGTTCCTCGAAGCGCTTCAGCTATTTGACCGTGATTGGAAGAAGATTGAAGCGTTTATCGGGTCGAAGACAGTTATTCAGATACGTAGTCATGCGCAGAAGTATTTCCTGAAGGTTCAGAAGAACGGGACAAGCGAGCATCTACCTCCACCTAGGCCGAAAAGGAAAGCTTCTCACCCTTACCCTCAGAAAGCCTCAAAAAATGCGCTGGCACTCCCACAAGTGTCTGGTTCATGTCAATCTTCATCGGCGTTACTTGAATCTGGGTTTAACCAAAGGCCAGATTCAGCATCGGTGCTTATTAGTCCCAGGGCTGGTGGGGTAGTCCCTTCTTGGCCTAATGGTTCTGTGCAAACAGCCAACCCATCGCATGAGAATAAAGGGCCAACTAGGCCGAGTTGTCATAGCGCAGAAAGTACTCCAAAAGCTCAACCAGCCAGTGAAACAACTGATCAAGGGAAGCGTAGCCAAAATCATGGCCAACATCCATTGAGAGTTCTGCCTGACTTTTCTCAAGTATACGGCTTCATTGGCAGTGTTTTTGACCCGAATATTTCAGGGCACCTGCAGACACTGAAGAAGATGGACCCTATAGATGTTGAAACGGTGTTATTGCTGATGAGAAATCTATCCATGAATTTGACAAGTCCTGATTTTGAAGATCATAGAAAGTTGCTGTCATCCTACAAGATTGATGGTGATTCAACAGACCACCTTGATGTGAGTAAAAGCCTTCATACTGACGAACACAAGAGTGTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

324

Amino Acids

35.44

Weight (kDa)

8.67

Isoelectric Point (pI)

44.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	60 - 105	1.4e-10	Myb-like DNA-binding domain
RVE6	PF24904	236 - 298	5.9e-37	REVEILLE 6-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	780
AasI	GACNNNNNNGTC	1 cut(s)	121
Acc16I	TGCGCA	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	780
AccB1I	GGYRCC	1 cut(s)	768
AccI	GTMKAC	2 cut(s)	110, 726
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	4 cut(s)	23, 89, 102, 128
AclWI	GGATC	3 cut(s)	38, 51, 141
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	1 cut(s)	844
AcuI	CTGAAG	3 cut(s)	209, 338, 803
AfaI	GTAC	2 cut(s)	161, 625
AfeI	AGCGCT	1 cut(s)	222
AfiI	CCNNNNNNNGG	5 cut(s)	28, 29, 40, 71, 521
AgsI	TTSAA	5 cut(s)	257, 467, 809, 866, 912
AjnI	CCWGG	1 cut(s)	515
AleI	CACNNNNGTG	2 cut(s)	104, 960
AluBI	AGCT	4 cut(s)	186, 229, 377, 635
AluI	AGCT	4 cut(s)	186, 229, 377, 635
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	3 cut(s)	38, 51, 141
AlwNI	CAGNNNCTG	1 cut(s)	781
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	46
Aor51HI	AGCGCT	1 cut(s)	222
AoxI	GGCC	8 cut(s)	31, 57, 362, 485, 542, 590, 599, 685
ApoI	RAATTY	1 cut(s)	844
ArsI	GACNNNNNNTTYG	2 cut(s)	103, 135
Asp700I	GAANNNNTTC	2 cut(s)	222, 311
AspA2I	CCTAGG	1 cut(s)	359
AspLEI	GCGC	4 cut(s)	223, 304, 415, 617
AspS9I	GGNCC	4 cut(s)	31, 74, 590, 793
AsuC2I	CCSGG	1 cut(s)	66
AsuHPI	GGTGA	3 cut(s)	160, 374, 917
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	74, 793
AvrII	CCTAGG	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	771
BalI	TGGCCA	1 cut(s)	687
BamHI	GGATCC	1 cut(s)	43
BanI	GGYRCC	1 cut(s)	768
BanII	GRGCYC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	3 cut(s)	580, 784, 896
BceAI	ACGGC	4 cut(s)	89, 102, 142, 745
BciT130I	CCWGG	1 cut(s)	517
BciVI	GTATCC	1 cut(s)	16
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	66
BfaI	CTAG	2 cut(s)	360, 597
BfmI	CTRYAG	2 cut(s)	773, 798
BfoI	RGCGCY	1 cut(s)	224
BfuAI	ACCTGC	1 cut(s)	780
BfuI	GTATCC	1 cut(s)	16
BglI	GCCNNNNNGGC	2 cut(s)	89, 598
BisI	GCNGC	1 cut(s)	90
BlnI	CCTAGG	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	91
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	2 cut(s)	66, 517
Bme18I	GGWCC	2 cut(s)	74, 793
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	4 cut(s)	31, 74, 590, 793
BmiI	GGNNCC	3 cut(s)	45, 770, 795
BmrFI	CCNGG	2 cut(s)	66, 517
BmsI	GCATC	2 cut(s)	355, 506
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	293
BsaJI	CCNNGG	4 cut(s)	84, 359, 515, 516
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 29, 40, 71, 521
Bse1I	ACTGG	1 cut(s)	645
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	517
BseDI	CCNNGG	4 cut(s)	84, 359, 515, 516
BseGI	GGATG	2 cut(s)	691, 887
BseLI	CCNNNNNNNGG	5 cut(s)	28, 29, 40, 71, 521
BseMII	CTCAG	3 cut(s)	128, 183, 407
BseNI	ACTGG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	771
BshFI	GGCC	8 cut(s)	33, 59, 364, 487, 544, 592, 601, 687
BshNI	GGYRCC	1 cut(s)	768
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	2 cut(s)	47, 65
BslFI	GGGAC	4 cut(s)	81, 349, 498, 518
BslI	CCNNNNNNNGG	5 cut(s)	28, 29, 40, 71, 521
BsmFI	GGGAC	4 cut(s)	81, 349, 498, 518
BsnI	GGCC	8 cut(s)	33, 59, 364, 487, 544, 592, 601, 687
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	3 cut(s)	198, 204, 771
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	4 cut(s)	43, 133, 658, 868
BspACI	CCGC	4 cut(s)	23, 89, 102, 128
BspANI	GGCC	8 cut(s)	33, 59, 364, 487, 544, 592, 601, 687
BspCNI	CTCAG	3 cut(s)	129, 184, 406
BspEI	TCCGGA	1 cut(s)	46
BspLI	GGNNCC	3 cut(s)	45, 770, 795
BspMAI	CTGCAG	1 cut(s)	777
BspMI	ACCTGC	1 cut(s)	780
BspPI	GGATC	3 cut(s)	38, 51, 141
BspT107I	GGYRCC	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	645
BssECI	CCNNGG	4 cut(s)	84, 359, 515, 516
BssMI	GATC	4 cut(s)	43, 133, 658, 868
BssNAI	GTATAC	1 cut(s)	727
BssT1I	CCWWGG	1 cut(s)	359
Bst1107I	GTATAC	1 cut(s)	727
Bst2UI	CCWGG	1 cut(s)	517
Bst4CI	ACNGT	3 cut(s)	239, 280, 814
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	344, 417
BstDEI	CTNAG	3 cut(s)	137, 192, 393
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	2 cut(s)	691, 887
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	4 cut(s)	223, 304, 415, 617
BstKTI	GATC	4 cut(s)	46, 136, 661, 871
BstMBI	GATC	4 cut(s)	43, 133, 658, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 598, 641, 738
BstNI	CCWGG	1 cut(s)	517
BstSCI	CCNGG	2 cut(s)	64, 515
BstSFI	CTRYAG	2 cut(s)	773, 798
BstSLI	GKGCMC	1 cut(s)	771
BstSNI	TACGTA	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	2 cut(s)	43, 133
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	2 cut(s)	43, 133
BstZ17I	GTATAC	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	8 cut(s)	33, 59, 364, 487, 544, 592, 601, 687
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	691, 887
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	3 cut(s)	652, 748, 779
BveI	ACCTGC	1 cut(s)	780
Cac8I	GCNNGC	2 cut(s)	344, 417
CaiI	CAGNNNCTG	1 cut(s)	781
CfoI	GCGC	4 cut(s)	223, 304, 415, 617
Cfr13I	GGNCC	4 cut(s)	31, 74, 590, 793
Csp6I	GTAC	2 cut(s)	160, 624
CviAII	CATG	5 cut(s)	299, 441, 578, 683, 841
CviQI	GTAC	2 cut(s)	160, 624
DdeI	CTNAG	3 cut(s)	137, 192, 393
DpnI	GATC	4 cut(s)	45, 135, 660, 870
DpnII	GATC	4 cut(s)	43, 133, 658, 868
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	685
EciI	GGCGGA	1 cut(s)	143
Eco105I	TACGTA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	74, 793
Eco47III	AGCGCT	1 cut(s)	222
Eco57I	CTGAAG	3 cut(s)	209, 338, 803
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	515
EcoT14I	CCWWGG	1 cut(s)	359
EcoT38I	GRGCYC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	359
FaeI	CATG	5 cut(s)	302, 444, 581, 686, 844
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	4 cut(s)	81, 349, 498, 518
FatI	CATG	5 cut(s)	298, 440, 577, 682, 840
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	658
FblI	GTMKAC	2 cut(s)	110, 726
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	678, 874
FriOI	GRGCYC	1 cut(s)	198
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	360, 597
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	4 cut(s)	222, 303, 414, 616
GluI	GCNGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	8 cut(s)	33, 59, 364, 487, 544, 592, 601, 687
HapII	CCGG	2 cut(s)	47, 65
HhaI	GCGC	4 cut(s)	223, 304, 415, 617
Hin1II	CATG	5 cut(s)	302, 444, 581, 686, 844
Hin6I	GCGC	4 cut(s)	221, 302, 413, 615
HinP1I	GCGC	4 cut(s)	221, 302, 413, 615
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	5 cut(s)	69, 148, 467, 491, 908
HpaII	CCGG	2 cut(s)	47, 65
HphI	GGTGA	3 cut(s)	160, 374, 917
Hpy166II	GTNNAC	3 cut(s)	111, 162, 727
Hpy188I	TCNGA	5 cut(s)	138, 153, 288, 327, 396
Hpy188III	TCNNGA	4 cut(s)	47, 177, 316, 857
Hpy8I	GTNNAC	3 cut(s)	111, 162, 727
Hpy99I	CGWCG	3 cut(s)	115, 118, 127
HpyAV	CCTTC	3 cut(s)	313, 546, 950
HpyCH4III	ACNGT	3 cut(s)	239, 280, 814
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	559, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 598, 641, 738
HpyF3I	CTNAG	3 cut(s)	137, 192, 393
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	5 cut(s)	302, 444, 581, 686, 844
HspAI	GCGC	4 cut(s)	221, 302, 413, 615
Kpn2I	TCCGGA	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	43, 133, 658, 868
LweI	GCATC	2 cut(s)	355, 506
MaeI	CTAG	2 cut(s)	360, 597
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	459
MalI	GATC	4 cut(s)	45, 135, 660, 870
MboI	GATC	4 cut(s)	43, 133, 658, 868
MboII	GAAGA	9 cut(s)	157, 259, 262, 286, 340, 441, 796, 799, 878
MflI	RGATCY	2 cut(s)	43, 133
MhlI	GDGCHC	3 cut(s)	198, 204, 771
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	1 cut(s)	844
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	22, 124, 224, 363, 402, 412
Mox20I	TGGCCA	1 cut(s)	687
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	2 cut(s)	222, 311
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	1 cut(s)	477
MslI	CAYNNNNRTG	3 cut(s)	104, 924, 960
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	2 cut(s)	47, 65
MspR9I	CCNGG	2 cut(s)	66, 517
MvaI	CCWGG	1 cut(s)	517
MwoI	GCNNNNNNNGC	4 cut(s)	89, 598, 641, 738
NciI	CCSGG	1 cut(s)	66
NdeII	GATC	4 cut(s)	43, 133, 658, 868
NlaIII	CATG	5 cut(s)	302, 444, 581, 686, 844
NlaIV	GGNNCC	3 cut(s)	45, 770, 795
NmeAIII	GCCGAG	1 cut(s)	627
NsbI	TGCGCA	1 cut(s)	303
OliI	CACNNNNGTG	2 cut(s)	104, 960
PaqCI	CACCTGC	1 cut(s)	780
PasI	CCCWGGG	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	2 cut(s)	119, 339
PdmI	GAANNNNTTC	2 cut(s)	222, 311
PfeI	GAWTC	4 cut(s)	148, 467, 491, 908
PflFI	GACNNNGTC	2 cut(s)	72, 121
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	515
PspN4I	GGNNCC	3 cut(s)	45, 770, 795
PspPI	GGNCC	4 cut(s)	31, 74, 590, 793
PstI	CTGCAG	1 cut(s)	777
PstNI	CAGNNNCTG	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	43, 133
PsyI	GACNNNGTC	2 cut(s)	72, 121
RsaI	GTAC	2 cut(s)	161, 625
RsaNI	GTAC	2 cut(s)	160, 624
RseI	CAYNNNNRTG	3 cut(s)	104, 924, 960
SalI	GTCGAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	4 cut(s)	43, 133, 658, 868
Sau96I	GGNCC	4 cut(s)	31, 74, 590, 793
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	66, 517
SduI	GDGCHC	3 cut(s)	198, 204, 771
SfaNI	GCATC	2 cut(s)	355, 506
SfcI	CTRYAG	2 cut(s)	773, 798
SfiI	GGCCNNNNNGGCC	1 cut(s)	598
SinI	GGWCC	2 cut(s)	74, 793
SmiMI	CAYNNNNRTG	3 cut(s)	104, 924, 960
SmlI	CTYRAG	1 cut(s)	720
SmoI	CTYRAG	1 cut(s)	720
SnaBI	TACGTA	1 cut(s)	293
Sse9I	AATT	1 cut(s)	844
SsiI	CCGC	4 cut(s)	23, 89, 102, 128
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	2 cut(s)	360, 597
StyD4I	CCNGG	2 cut(s)	64, 515
StyI	CCWWGG	1 cut(s)	359
TaaI	ACNGT	3 cut(s)	239, 280, 814
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	3 cut(s)	110, 216, 272
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	844
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	4 cut(s)	148, 467, 491, 908
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	3 cut(s)	652, 748, 786
TspDTI	ATGAA	5 cut(s)	429, 441, 724, 857, 932
TspRI	CASTG	3 cut(s)	652, 748, 786
Tth111I	GACNNNGTC	2 cut(s)	72, 121
VpaK11BI	GGWCC	2 cut(s)	74, 793
XapI	RAATTY	1 cut(s)	844
XmaJI	CCTAGG	1 cut(s)	359
XmiI	GTMKAC	2 cut(s)	110, 726
XmnI	GAANNNNTTC	2 cut(s)	222, 311
XspI	CTAG	2 cut(s)	360, 597
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.