Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011669

Physical Location & Seq

Genomic Coordinates Forward (+)

51471222 .. 51473369

Gene Structure 2148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0408800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCGGTGAAGTGGGTATGTTCAAGTTCCTGAAGCCCAAGAGTCGTCCTCACCCCGTGGATATCCAAGCCGCTGCCTTGTGGGGTGTCGCCGCCGGCACCACGGCTCTTTGGGTCGTCCAGCCATTCAACTGGATAAAGAAGACCTTTTTCGAGACTCCAGAACCAGAAAAAGTTCATGGGAATAATTATGTATTTTTGTACTGGTATTCGCGAACGGGTAAAATCCAAAGCGGTTGGTTGAGCGGCCTAGTATGGAATATGCTGATCGAAACCGTACTGAACGTACATTCCAAGAAGGTGATTGGGTTTTTCTTGAGCTCCATCCTTACTGGTAGAAGTCCTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0042493 GO:0042752 GO:0046677 GO:0046686 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

116

Amino Acids

13.11

Weight (kDa)

9.85

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011669)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52660 AT5G52660
fragaria_vesca	FvH4_7g30300
malus_domestica	MD01G1208900.v1.1 MD07G1279300.v1.1
prunus_persica	Prupe.2G301500_v2.0.a1
pyrus_communis	pycom01g21950 pycom07g25410
rosa_chinensis	RchiOBHm_Chr1g0378441
rosa_laevigata	RLG00000026436
rosa_multiflora	Rmu_sc0000938.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280460
rosa_rugosa	Rorug01G0408700 Rorug01G0408800
rosa_samantha	Rh1AG430200 Rh1BG388000 Rh1CG401500 Rh1DG419100
rosa_wichuraiana	Rw1G037660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	98
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	1 cut(s)	214
AciI	CCGC	4 cut(s)	72, 93, 234, 246
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	53
AdeI	CACNNNGTG	1 cut(s)	58
AfaI	GTAC	3 cut(s)	203, 279, 288
AgsI	TTSAA	2 cut(s)	25, 130
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	1 cut(s)	149
AoxI	GGCC	2 cut(s)	3, 247
ApeKI	GCWGC	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	20, 44, 313
BanI	GGYRCC	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	120
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	4 cut(s)	72, 75, 93, 247
BlsI	GCNGC	4 cut(s)	73, 76, 94, 248
BmiI	GGNNCC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	149
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	337
BsaJI	CCNNGG	2 cut(s)	57, 102
Bse118I	RCCGGY	2 cut(s)	5, 95
Bse1I	ACTGG	3 cut(s)	137, 209, 337
BseDI	CCNNGG	2 cut(s)	57, 102
BseGI	GGATG	1 cut(s)	324
BseNI	ACTGG	3 cut(s)	137, 209, 337
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	5, 249
BshNI	GGYRCC	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	6, 96
BsmAI	GTCTC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	5, 249
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	267
Bsp68I	TCGCGA	1 cut(s)	214
BspACI	CCGC	4 cut(s)	72, 93, 234, 246
BspANI	GGCC	2 cut(s)	5, 249
BspFNI	CGCG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	100
BspT107I	GGYRCC	1 cut(s)	98
BsrBI	CCGCTC	1 cut(s)	246
BsrFI	RCCGGY	2 cut(s)	5, 95
BsrI	ACTGG	3 cut(s)	137, 209, 337
BssAI	RCCGGY	2 cut(s)	5, 95
BssECI	CCNNGG	2 cut(s)	57, 102
BssMI	GATC	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	97
BstDSI	CCRYGG	2 cut(s)	57, 102
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	214
BstKTI	GATC	1 cut(s)	270
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	5, 249
BtgI	CCRYGG	2 cut(s)	57, 102
BtsCI	GGATG	1 cut(s)	324
BtuMI	TCGCGA	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	97
Cfr10I	RCCGGY	2 cut(s)	5, 95
Csp6I	GTAC	3 cut(s)	202, 278, 287
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	7 cut(s)	5, 37, 71, 107, 124, 249, 321
CviKI_1	RGCY	7 cut(s)	5, 37, 71, 107, 124, 249, 321
CviQI	GTAC	3 cut(s)	202, 278, 287
DpnI	GATC	1 cut(s)	269
DpnII	GATC	1 cut(s)	267
DraIII	CACNNNGTG	1 cut(s)	58
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	64
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	321
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	1 cut(s)	182
FaiI	YATR	5 cut(s)	20, 180, 192, 256, 263
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	4 cut(s)	72, 75, 93, 247
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	4 cut(s)	72, 75, 93, 247
FspBI	CTAG	1 cut(s)	251
GluI	GCNGC	4 cut(s)	72, 75, 93, 247
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	5, 249
HapII	CCGG	2 cut(s)	6, 96
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	2 cut(s)	43, 157
HpaII	CCGG	2 cut(s)	6, 96
HphI	GGTGA	3 cut(s)	20, 44, 313
Hpy188III	TCNNGA	5 cut(s)	31, 154, 161, 213, 316
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	285
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	267
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	9 cut(s)	19, 44, 109, 118, 134, 174, 180, 190, 318
Lsp1109I	GCAGC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	269
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	1 cut(s)	267
MboII	GAAGA	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	1 cut(s)	187
MlyI	GAGTC	2 cut(s)	52, 151
MnlI	CCTC	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	6, 96
MvnI	CGCG	1 cut(s)	214
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	267
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	73, 76, 94, 248
PleI	GAGTC	2 cut(s)	51, 151
PpsI	GAGTC	2 cut(s)	51, 151
Psp124BI	GAGCTC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	100
RruI	TCGCGA	1 cut(s)	214
RsaI	GTAC	3 cut(s)	203, 279, 288
RsaNI	GTAC	3 cut(s)	202, 278, 287
SacI	GAGCTC	1 cut(s)	323
SatI	GCNGC	4 cut(s)	72, 75, 93, 247
Sau3AI	GATC	1 cut(s)	267
SchI	GAGTC	2 cut(s)	52, 151
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	4 cut(s)	149, 288, 303, 323
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	4 cut(s)	72, 93, 234, 246
SspMI	CTAG	1 cut(s)	251
SstI	GAGCTC	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	153, 270
TasI	AATT	1 cut(s)	187
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	3 cut(s)	74, 95, 249
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.