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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52950 AT5G52950 |
| fragaria_vesca | FvH4_7g30790 |
| malus_domestica | MD01G1213200.v1.1 MD01G1213400.v1.1 MD07G1283200.v1.1 |
| prunus_persica | Prupe.2G305400_v2.0.a1 |
| pyrus_communis | pycom01g22430 pycom07g25730 |
| rosa_chinensis | RchiOBHm_Chr1g0379731 |
| rosa_laevigata | RLG00000026358 RLG00000026362 |
| rosa_multiflora | Rmu_co8427163.1_g000001 Rmu_sc0013028.1_g000010 Rmu_sc0014259.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00279930 |
| rosa_rugosa | Rorug01G0415100 |
| rosa_samantha | Rh1AG438600 Rh1AG439100 Rh1BG395100 Rh1CG408200 Rh1CG408400 Rh1DG425500 Rh1DG426000 Rh6CG162800 Rh6DG154400 Rh7CG443300 |
| rosa_wichuraiana | Rw1G038200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 2623 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 812 |
| AccBSI | CCGCTC | 2 cut(s) | 1900, 2074 |
| AccI | GTMKAC | 2 cut(s) | 1097, 2286 |
| AccII | CGCG | 3 cut(s) | 285, 296, 368 |
| AccIII | TCCGGA | 2 cut(s) | 424, 1772 |
| AclWI | GGATC | 6 cut(s) | 416, 1410, 2009, 2111, 2364, 2388 |
| AcoI | YGGCCR | 1 cut(s) | 2676 |
| AcsI | RAATTY | 6 cut(s) | 167, 373, 481, 845, 1462, 1822 |
| AcuI | CTGAAG | 5 cut(s) | 762, 839, 1719, 1758, 1890 |
| AfaI | GTAC | 3 cut(s) | 1039, 2494, 2814 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 431, 812, 1978 |
| AflII | CTTAAG | 1 cut(s) | 1571 |
| AgeI | ACCGGT | 1 cut(s) | 409 |
| AjnI | CCWGG | 5 cut(s) | 442, 1131, 1179, 2303, 2488 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1447, 1479 |
| Alw26I | GTCTC | 8 cut(s) | 277, 1132, 1199, 1392, 1697, 2720, 2741, 2786 |
| AlwI | GGATC | 6 cut(s) | 416, 1410, 2009, 2111, 2364, 2388 |
| Ama87I | CYCGRG | 1 cut(s) | 2581 |
| Aor13HI | TCCGGA | 2 cut(s) | 424, 1772 |
| AoxI | GGCC | 4 cut(s) | 1056, 1356, 2655, 2676 |
| ApeKI | GCWGC | 3 cut(s) | 31, 1620, 2122 |
| ApoI | RAATTY | 6 cut(s) | 167, 373, 481, 845, 1462, 1822 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 200, 232 |
| AseI | ATTAAT | 2 cut(s) | 797, 882 |
| AsiGI | ACCGGT | 1 cut(s) | 409 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1826, 2484 |
| AspLEI | GCGC | 1 cut(s) | 287 |
| AspS9I | GGNCC | 1 cut(s) | 2093 |
| AsuHPI | GGTGA | 5 cut(s) | 566, 926, 1223, 1227, 2273 |
| AvaI | CYCGRG | 1 cut(s) | 2581 |
| AvaII | GGWCC | 1 cut(s) | 2093 |
| BaeGI | GKGCMC | 1 cut(s) | 2626 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1098, 1131 |
| BanI | GGYRCC | 1 cut(s) | 2623 |
| BauI | CACGAG | 1 cut(s) | 351 |
| BbsI | GAAGAC | 3 cut(s) | 1829, 1912, 2415 |
| BbvI | GCAGC | 3 cut(s) | 43, 1632, 2109 |
| BccI | CCATC | 6 cut(s) | 296, 449, 1025, 2134, 2240, 2347 |
| BceAI | ACGGC | 3 cut(s) | 83, 354, 2691 |
| BciT130I | CCWGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| BclI | TGATCA | 2 cut(s) | 69, 1141 |
| BcoDI | GTCTC | 8 cut(s) | 277, 1132, 1199, 1392, 1697, 2720, 2741, 2786 |
| BfmI | CTRYAG | 4 cut(s) | 1267, 1495, 1951, 2123 |
| BfrI | CTTAAG | 1 cut(s) | 1571 |
| BglII | AGATCT | 3 cut(s) | 52, 1248, 1525 |
| BisI | GCNGC | 7 cut(s) | 32, 114, 342, 369, 1621, 1901, 2123 |
| BlsI | GCNGC | 7 cut(s) | 33, 115, 343, 370, 1622, 1902, 2124 |
| Bme1390I | CCNGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| Bme18I | GGWCC | 1 cut(s) | 2093 |
| BmeT110I | CYCGRG | 1 cut(s) | 2581 |
| BmgT120I | GGNCC | 1 cut(s) | 2093 |
| BmiI | GGNNCC | 5 cut(s) | 408, 1969, 2095, 2270, 2625 |
| BmrFI | CCNGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| BmrI | ACTGGG | 1 cut(s) | 2091 |
| BmsI | GCATC | 3 cut(s) | 353, 1814, 2589 |
| BmuI | ACTGGG | 1 cut(s) | 2091 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2415 |
| BpiI | GAAGAC | 3 cut(s) | 1829, 1912, 2415 |
| BpmI | CTGGAG | 2 cut(s) | 27, 693 |
| BpuEI | CTTGAG | 4 cut(s) | 887, 1081, 1319, 2243 |
| BsaAI | YACGTR | 1 cut(s) | 1794 |
| BsaBI | GATNNNNATC | 3 cut(s) | 57, 1146, 2379 |
| BsaI | GGTCTC | 1 cut(s) | 2741 |
| BsaJI | CCNNGG | 5 cut(s) | 327, 1131, 1353, 1454, 1629 |
| BsaWI | WCCGGW | 3 cut(s) | 409, 424, 1772 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1151, 1181, 2316, 2346 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 431, 812, 1978 |
| Bse118I | RCCGGY | 1 cut(s) | 409 |
| Bse1I | ACTGG | 3 cut(s) | 995, 2097, 2770 |
| Bse3DI | GCAATG | 3 cut(s) | 1315, 1651, 1746 |
| Bse8I | GATNNNNATC | 3 cut(s) | 57, 1146, 2379 |
| BseAI | TCCGGA | 2 cut(s) | 424, 1772 |
| BseBI | CCWGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| BseDI | CCNNGG | 5 cut(s) | 327, 1131, 1353, 1454, 1629 |
| BseGI | GGATG | 7 cut(s) | 200, 1071, 1596, 1663, 2145, 2604, 2839 |
| BseJI | GATNNNNATC | 3 cut(s) | 57, 1146, 2379 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 431, 812, 1978 |
| BseMI | GCAATG | 3 cut(s) | 1315, 1651, 1746 |
| BseMII | CTCAG | 6 cut(s) | 522, 981, 1060, 1296, 1932, 2505 |
| BseNI | ACTGG | 3 cut(s) | 995, 2097, 2770 |
| BseRI | GAGGAG | 7 cut(s) | 1169, 1172, 1380, 1502, 1684, 1918, 2340 |
| BseSI | GKGCMC | 1 cut(s) | 2626 |
| BseXI | GCAGC | 3 cut(s) | 43, 1632, 2109 |
| BseYI | CCCAGC | 1 cut(s) | 1482 |
| Bsh1236I | CGCG | 3 cut(s) | 285, 296, 368 |
| BshFI | GGCC | 4 cut(s) | 1058, 1358, 2657, 2678 |
| BshNI | GGYRCC | 1 cut(s) | 2623 |
| BshTI | ACCGGT | 1 cut(s) | 409 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2581 |
| BsiSI | CCGG | 3 cut(s) | 410, 425, 1773 |
| BslFI | GGGAC | 1 cut(s) | 1000 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 431, 812, 1978 |
| BsmAI | GTCTC | 8 cut(s) | 277, 1132, 1199, 1392, 1697, 2720, 2741, 2786 |
| BsmBI | CGTCTC | 2 cut(s) | 277, 1199 |
| BsmFI | GGGAC | 1 cut(s) | 1000 |
| BsmI | GAATGC | 2 cut(s) | 905, 2229 |
| BsnI | GGCC | 4 cut(s) | 1058, 1358, 2657, 2678 |
| Bso31I | GGTCTC | 1 cut(s) | 2741 |
| BsoBI | CYCGRG | 1 cut(s) | 2581 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2626 |
| Bsp13I | TCCGGA | 2 cut(s) | 424, 1772 |
| BspANI | GGCC | 4 cut(s) | 1058, 1358, 2657, 2678 |
| BspCNI | CTCAG | 6 cut(s) | 523, 982, 1059, 1295, 1933, 2506 |
| BspEI | TCCGGA | 2 cut(s) | 424, 1772 |
| BspFNI | CGCG | 3 cut(s) | 285, 296, 368 |
| BspHI | TCATGA | 3 cut(s) | 1003, 1405, 2397 |
| BspLI | GGNNCC | 5 cut(s) | 408, 1969, 2095, 2270, 2625 |
| BspMAI | CTGCAG | 2 cut(s) | 1499, 2127 |
| BspPI | GGATC | 6 cut(s) | 416, 1410, 2009, 2111, 2364, 2388 |
| BspT107I | GGYRCC | 1 cut(s) | 2623 |
| BspTI | CTTAAG | 1 cut(s) | 1571 |
| BspTNI | GGTCTC | 1 cut(s) | 2741 |
| BsrBI | CCGCTC | 2 cut(s) | 1900, 2074 |
| BsrDI | GCAATG | 3 cut(s) | 1315, 1651, 1746 |
| BsrFI | RCCGGY | 1 cut(s) | 409 |
| BsrI | ACTGG | 3 cut(s) | 995, 2097, 2770 |
| BssAI | RCCGGY | 1 cut(s) | 409 |
| BssECI | CCNNGG | 5 cut(s) | 327, 1131, 1353, 1454, 1629 |
| BssNAI | GTATAC | 1 cut(s) | 1098 |
| BssSI | CACGAG | 1 cut(s) | 351 |
| BssT1I | CCWWGG | 1 cut(s) | 1454 |
| Bst1107I | GTATAC | 1 cut(s) | 1098 |
| Bst2BI | CACGAG | 1 cut(s) | 351 |
| Bst2UI | CCWGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| Bst4CI | ACNGT | 4 cut(s) | 331, 1023, 1399, 2414 |
| Bst6I | CTCTTC | 4 cut(s) | 161, 947, 1695, 1734 |
| BstAFI | CTTAAG | 1 cut(s) | 1571 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2235 |
| BstBAI | YACGTR | 1 cut(s) | 1794 |
| BstDSI | CCRYGG | 2 cut(s) | 327, 1629 |
| BstF5I | GGATG | 7 cut(s) | 200, 1071, 1596, 1663, 2145, 2604, 2839 |
| BstFNI | CGCG | 3 cut(s) | 285, 296, 368 |
| BstHHI | GCGC | 1 cut(s) | 287 |
| BstMAI | GTCTC | 8 cut(s) | 277, 1132, 1199, 1392, 1697, 2720, 2741, 2786 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 40, 293, 341, 1172, 2235 |
| BstNI | CCWGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| BstNSI | RCATGY | 1 cut(s) | 2218 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2415 |
| BstSCI | CCNGG | 5 cut(s) | 442, 1131, 1179, 2303, 2488 |
| BstSFI | CTRYAG | 4 cut(s) | 1267, 1495, 1951, 2123 |
| BstSLI | GKGCMC | 1 cut(s) | 2626 |
| BstSNI | TACGTA | 1 cut(s) | 1794 |
| BstUI | CGCG | 3 cut(s) | 285, 296, 368 |
| BstV1I | GCAGC | 3 cut(s) | 43, 1632, 2109 |
| BstV2I | GAAGAC | 3 cut(s) | 1829, 1912, 2415 |
| BstX2I | RGATCY | 7 cut(s) | 52, 421, 1248, 1525, 2014, 2356, 2380 |
| BstYI | RGATCY | 7 cut(s) | 52, 421, 1248, 1525, 2014, 2356, 2380 |
| BstZ17I | GTATAC | 1 cut(s) | 1098 |
| BsuRI | GGCC | 4 cut(s) | 1058, 1358, 2657, 2678 |
| BtgI | CCRYGG | 2 cut(s) | 327, 1629 |
| BtgZI | GCGATG | 1 cut(s) | 330 |
| BtsCI | GGATG | 7 cut(s) | 200, 1071, 1596, 1663, 2145, 2604, 2839 |
| BtsIMutI | CAGTG | 6 cut(s) | 1509, 2067, 2240, 2370, 2511, 2709 |
| CciI | TCATGA | 3 cut(s) | 1003, 1405, 2397 |
| CfoI | GCGC | 1 cut(s) | 287 |
| Cfr10I | RCCGGY | 1 cut(s) | 409 |
| Cfr13I | GGNCC | 1 cut(s) | 2093 |
| CseI | GACGC | 2 cut(s) | 302, 1673 |
| CsiI | ACCWGGT | 1 cut(s) | 1179 |
| Csp6I | GTAC | 3 cut(s) | 1038, 2493, 2813 |
| CspAI | ACCGGT | 1 cut(s) | 409 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 892, 927 |
| CviAII | CATG | 6 cut(s) | 1004, 1406, 1802, 2215, 2365, 2398 |
| CviQI | GTAC | 3 cut(s) | 1038, 2493, 2813 |
| EaeI | YGGCCR | 1 cut(s) | 2676 |
| Eam1104I | CTCTTC | 4 cut(s) | 161, 947, 1695, 1734 |
| EarI | CTCTTC | 4 cut(s) | 161, 947, 1695, 1734 |
| EciI | GGCGGA | 2 cut(s) | 100, 2265 |
| Eco105I | TACGTA | 1 cut(s) | 1794 |
| Eco130I | CCWWGG | 1 cut(s) | 1454 |
| Eco147I | AGGCCT | 1 cut(s) | 1058 |
| Eco31I | GGTCTC | 1 cut(s) | 2741 |
| Eco47I | GGWCC | 1 cut(s) | 2093 |
| Eco57I | CTGAAG | 5 cut(s) | 762, 839, 1719, 1758, 1890 |
| Eco88I | CYCGRG | 1 cut(s) | 2581 |
| EcoRII | CCWGG | 5 cut(s) | 442, 1131, 1179, 2303, 2488 |
| EcoT14I | CCWWGG | 1 cut(s) | 1454 |
| EcoT22I | ATGCAT | 2 cut(s) | 1651, 1807 |
| ErhI | CCWWGG | 1 cut(s) | 1454 |
| Esp3I | CGTCTC | 2 cut(s) | 277, 1199 |
| FaeI | CATG | 6 cut(s) | 1007, 1409, 1805, 2218, 2368, 2401 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 113, 145 |
| FaqI | GGGAC | 1 cut(s) | 1000 |
| FatI | CATG | 6 cut(s) | 1003, 1405, 1801, 2214, 2364, 2397 |
| FbaI | TGATCA | 2 cut(s) | 69, 1141 |
| FblI | GTMKAC | 2 cut(s) | 1097, 2286 |
| Fnu4HI | GCNGC | 7 cut(s) | 32, 114, 342, 369, 1621, 1901, 2123 |
| FokI | GGATG | 6 cut(s) | 187, 1078, 1603, 1670, 2152, 2611 |
| Fsp4HI | GCNGC | 7 cut(s) | 32, 114, 342, 369, 1621, 1901, 2123 |
| GlaI | GCGC | 1 cut(s) | 286 |
| GluI | GCNGC | 7 cut(s) | 32, 114, 342, 369, 1621, 1901, 2123 |
| GsaI | CCCAGC | 1 cut(s) | 1486 |
| GsuI | CTGGAG | 2 cut(s) | 27, 693 |
| HaeIII | GGCC | 4 cut(s) | 1058, 1358, 2657, 2678 |
| HapII | CCGG | 3 cut(s) | 410, 425, 1773 |
| HgaI | GACGC | 2 cut(s) | 302, 1673 |
| HhaI | GCGC | 1 cut(s) | 287 |
| Hin1II | CATG | 6 cut(s) | 1007, 1409, 1805, 2218, 2368, 2401 |
| Hin6I | GCGC | 1 cut(s) | 285 |
| HinP1I | GCGC | 1 cut(s) | 285 |
| HindIII | AAGCTT | 1 cut(s) | 122 |
| HpaII | CCGG | 3 cut(s) | 410, 425, 1773 |
| HphI | GGTGA | 5 cut(s) | 566, 926, 1223, 1227, 2273 |
| Hpy166II | GTNNAC | 6 cut(s) | 890, 1098, 1607, 1663, 2287, 2370 |
| Hpy8I | GTNNAC | 6 cut(s) | 890, 1098, 1607, 1663, 2287, 2370 |
| Hpy99I | CGWCG | 3 cut(s) | 104, 296, 340 |
| HpyAV | CCTTC | 6 cut(s) | 263, 863, 1268, 1351, 1939, 2683 |
| HpyCH4III | ACNGT | 4 cut(s) | 331, 1023, 1399, 2414 |
| HpyCH4IV | ACGT | 1 cut(s) | 1793 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 40, 293, 341, 1172, 2235 |
| HpySE526I | ACGT | 1 cut(s) | 1793 |
| Hsp92II | CATG | 6 cut(s) | 1007, 1409, 1805, 2218, 2368, 2401 |
| HspAI | GCGC | 1 cut(s) | 285 |
| Kpn2I | TCCGGA | 2 cut(s) | 424, 1772 |
| Ksp22I | TGATCA | 2 cut(s) | 69, 1141 |
| LmnI | GCTCC | 5 cut(s) | 85, 329, 2268, 2327, 2692 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 1632, 2109 |
| LweI | GCATC | 3 cut(s) | 353, 1814, 2589 |
| MabI | ACCWGGT | 1 cut(s) | 1179 |
| MaeII | ACGT | 1 cut(s) | 1793 |
| MaeIII | GTNAC | 4 cut(s) | 216, 2004, 2185, 2768 |
| MbiI | CCGCTC | 2 cut(s) | 1900, 2074 |
| MfeI | CAATTG | 3 cut(s) | 762, 810, 1674 |
| MflI | RGATCY | 7 cut(s) | 52, 421, 1248, 1525, 2014, 2356, 2380 |
| MhlI | GDGCHC | 1 cut(s) | 2626 |
| MlyI | GAGTC | 4 cut(s) | 1001, 1130, 1874, 2625 |
| MmeI | TCCRAC | 1 cut(s) | 2576 |
| Mph1103I | ATGCAT | 2 cut(s) | 1651, 1807 |
| MroI | TCCGGA | 2 cut(s) | 424, 1772 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1826, 2484 |
| MspCI | CTTAAG | 1 cut(s) | 1571 |
| MspI | CCGG | 3 cut(s) | 410, 425, 1773 |
| MspR9I | CCNGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| MunI | CAATTG | 3 cut(s) | 762, 810, 1674 |
| Mva1269I | GAATGC | 2 cut(s) | 905, 2229 |
| MvaI | CCWGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| MvnI | CGCG | 3 cut(s) | 285, 296, 368 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 40, 293, 341, 1172, 2235 |
| NlaIII | CATG | 6 cut(s) | 1007, 1409, 1805, 2218, 2368, 2401 |
| NlaIV | GGNNCC | 5 cut(s) | 408, 1969, 2095, 2270, 2625 |
| NmeAIII | GCCGAG | 3 cut(s) | 142, 1334, 1921 |
| NmuCI | GTSAC | 2 cut(s) | 216, 2185 |
| NsiI | ATGCAT | 2 cut(s) | 1651, 1807 |
| NspI | RCATGY | 1 cut(s) | 2218 |
| PaeR7I | CTCGAG | 1 cut(s) | 2581 |
| PagI | TCATGA | 3 cut(s) | 1003, 1405, 2397 |
| PceI | AGGCCT | 1 cut(s) | 1058 |
| PctI | GAATGC | 2 cut(s) | 905, 2229 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1826, 2484 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 812 |
| PfoI | TCCNGGA | 1 cut(s) | 442 |
| PinAI | ACCGGT | 1 cut(s) | 409 |
| PkrI | GCNGC | 7 cut(s) | 33, 115, 343, 370, 1622, 1902, 2124 |
| PleI | GAGTC | 4 cut(s) | 1001, 1130, 1873, 2624 |
| PpsI | GAGTC | 4 cut(s) | 1001, 1130, 1873, 2624 |
| Ppu21I | YACGTR | 1 cut(s) | 1794 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2415 |
| PshBI | ATTAAT | 2 cut(s) | 797, 882 |
| Psp6I | CCWGG | 5 cut(s) | 442, 1131, 1179, 2303, 2488 |
| PspFI | CCCAGC | 1 cut(s) | 1482 |
| PspGI | CCWGG | 5 cut(s) | 442, 1131, 1179, 2303, 2488 |
| PspN4I | GGNNCC | 5 cut(s) | 408, 1969, 2095, 2270, 2625 |
| PspPI | GGNCC | 1 cut(s) | 2093 |
| PstI | CTGCAG | 2 cut(s) | 1499, 2127 |
| PsuI | RGATCY | 7 cut(s) | 52, 421, 1248, 1525, 2014, 2356, 2380 |
| RsaI | GTAC | 3 cut(s) | 1039, 2494, 2814 |
| RsaNI | GTAC | 3 cut(s) | 1038, 2493, 2813 |
| SatI | GCNGC | 7 cut(s) | 32, 114, 342, 369, 1621, 1901, 2123 |
| Sau96I | GGNCC | 1 cut(s) | 2093 |
| SchI | GAGTC | 4 cut(s) | 1001, 1130, 1874, 2625 |
| ScrFI | CCNGG | 5 cut(s) | 444, 1133, 1181, 2305, 2490 |
| SduI | GDGCHC | 1 cut(s) | 2626 |
| SexAI | ACCWGGT | 1 cut(s) | 1179 |
| SfaNI | GCATC | 3 cut(s) | 353, 1814, 2589 |
| SfcI | CTRYAG | 4 cut(s) | 1267, 1495, 1951, 2123 |
| Sfr274I | CTCGAG | 1 cut(s) | 2581 |
| SinI | GGWCC | 1 cut(s) | 2093 |
| SlaI | CTCGAG | 1 cut(s) | 2581 |
| SmlI | CTYRAG | 6 cut(s) | 866, 1060, 1334, 1571, 2222, 2581 |
| SmoI | CTYRAG | 6 cut(s) | 866, 1060, 1334, 1571, 2222, 2581 |
| SnaBI | TACGTA | 1 cut(s) | 1794 |
| SseBI | AGGCCT | 1 cut(s) | 1058 |
| SspI | AATATT | 1 cut(s) | 942 |
| StuI | AGGCCT | 1 cut(s) | 1058 |
| StyD4I | CCNGG | 5 cut(s) | 442, 1131, 1179, 2303, 2488 |
| StyI | CCWWGG | 1 cut(s) | 1454 |
| TaaI | ACNGT | 4 cut(s) | 331, 1023, 1399, 2414 |
| TaiI | ACGT | 1 cut(s) | 1796 |
| TaqI | TCGA | 7 cut(s) | 291, 316, 418, 479, 714, 1562, 2582 |
| TauI | GCSGC | 4 cut(s) | 116, 344, 371, 1903 |
| TscAI | CASTG | 6 cut(s) | 1509, 2067, 2240, 2377, 2518, 2709 |
| TseFI | GTSAC | 2 cut(s) | 216, 2185 |
| TseI | GCWGC | 3 cut(s) | 31, 1620, 2122 |
| Tsp45I | GTSAC | 2 cut(s) | 216, 2185 |
| TspGWI | ACGGA | 1 cut(s) | 1618 |
| TspRI | CASTG | 6 cut(s) | 1509, 2067, 2240, 2377, 2518, 2709 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 812 |
| Vha464I | CTTAAG | 1 cut(s) | 1571 |
| VpaK11BI | GGWCC | 1 cut(s) | 2093 |
| VspI | ATTAAT | 2 cut(s) | 797, 882 |
| XapI | RAATTY | 6 cut(s) | 167, 373, 481, 845, 1462, 1822 |
| XbaI | TCTAGA | 1 cut(s) | 1528 |
| XceI | RCATGY | 1 cut(s) | 2218 |
| XhoI | CTCGAG | 1 cut(s) | 2581 |
| XmiI | GTMKAC | 2 cut(s) | 1097, 2286 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1826, 2484 |
| Zsp2I | ATGCAT | 2 cut(s) | 1651, 1807 |