Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014259.1

Orthogroup ID

OG0005716

Physical Location & Seq

Genomic Coordinates Reverse (-)

2578 .. 4342

Gene Structure 1765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014259.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggagattttacaatcagaagttggagcaagtatcaaaggttctgtgaaacagaagtttgtgaaaaatatttgcatgcttttggaggccattcgtgttcggtgtcatctggagggaggcttctttggtgactggaccctagaaaattatgctggaaagattataaaaaacaggtactgtcagactgctgaagatgtggttcataaaatctacacaaaaatggatctgttgctgtttgatgatgaggaagaactctctaataatctattcaacagtgaggatagcaatcaatcctacagagaaaaaccagggaaagatgaggtgggtgaaaatagtagaatcaaggaattagtatcagcagaagatgaatcccctgatctgggaaaacattacaatggaagaccaagtgctcaagtggttaaacaagaggagcatgctcgcaagttgattgaagctcaagagagtagagagagggctaggagatttgcttcttttacaagtagggtagctgatttgcagcgagtttgggccccaaaacagcctaaggcgttcaagccaaaatcaaattctcttccaaagcccgctaagaggaaggaccatacagattcctattatgagagagtattagaaaccccaatgacagaaaataaacgaatccacatcaatgatgaagattaccaagactatggaagccgttctgtttctaaatcattgtttcaggatgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

28.0

Weight (kDa)

6.35

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52950 AT5G52950
fragaria_vesca	FvH4_7g30790
malus_domestica	MD01G1213200.v1.1 MD01G1213400.v1.1 MD07G1283200.v1.1
prunus_persica	Prupe.2G305400_v2.0.a1
pyrus_communis	pycom01g22430 pycom07g25730
rosa_chinensis	RchiOBHm_Chr1g0379731
rosa_laevigata	RLG00000026358 RLG00000026362
rosa_multiflora	Rmu_co8427163.1_g000001 Rmu_sc0013028.1_g000010 Rmu_sc0014259.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279930
rosa_rugosa	Rorug01G0415100
rosa_samantha	Rh1AG438600 Rh1AG439100 Rh1BG395100 Rh1CG408200 Rh1CG408400 Rh1DG425500 Rh1DG426000 Rh6CG162800 Rh6DG154400 Rh7CG443300
rosa_wichuraiana	Rw1G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	164
AciI	CCGC	1 cut(s)	582
AclWI	GGATC	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	379, 380, 588
AgsI	TTSAA	3 cut(s)	271, 452, 553
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	550, 582
AluBI	AGCT	2 cut(s)	455, 509
AluI	AGCT	2 cut(s)	455, 509
Alw21I	GWGCWC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	177
AoxI	GGCC	2 cut(s)	87, 528
ApaI	GGGCCC	1 cut(s)	532
ApeKI	GCWGC	1 cut(s)	517
ApoI	RAATTY	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	694
AspS9I	GGNCC	4 cut(s)	135, 528, 529, 595
AsuHPI	GGTGA	2 cut(s)	140, 338
AvaII	GGWCC	2 cut(s)	135, 595
AxyI	CCTNAGG	1 cut(s)	543
BaeGI	GKGCMC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	529
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	1 cut(s)	309
BfaI	CTAG	3 cut(s)	140, 477, 727
BfmI	CTRYAG	1 cut(s)	295
BisI	GCNGC	1 cut(s)	518
BlsI	GCNGC	1 cut(s)	519
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	135, 595
BmgT120I	GGNCC	4 cut(s)	135, 528, 529, 595
BmiI	GGNNCC	3 cut(s)	137, 530, 531
BmrFI	CCNGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	406
BpmI	CTGGAG	1 cut(s)	131
BpuEI	CTTGAG	2 cut(s)	396, 441
BsaBI	GATNNNNATC	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 380, 588
Bse1I	ACTGG	1 cut(s)	137
Bse21I	CCTNAGG	1 cut(s)	543
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	727
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	379, 380, 588
BseNI	ACTGG	1 cut(s)	137
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	529
BshFI	GGCC	2 cut(s)	89, 530
BsiHKAI	GWGCWC	1 cut(s)	412
BslI	CCNNNNNNNGG	3 cut(s)	379, 380, 588
BsnI	GGCC	2 cut(s)	89, 530
Bsp120I	GGGCCC	1 cut(s)	528
Bsp1286I	GDGCHC	2 cut(s)	412, 532
Bsp143I	GATC	2 cut(s)	223, 376
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	2 cut(s)	89, 530
BspLI	GGNNCC	3 cut(s)	137, 530, 531
BspPI	GGATC	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	2 cut(s)	223, 376
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	179, 275
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	4 cut(s)	77, 435, 439, 582
BstDEI	CTNAG	2 cut(s)	543, 585
BstF5I	GGATG	1 cut(s)	727
BstKTI	GATC	2 cut(s)	226, 379
BstMBI	GATC	2 cut(s)	223, 376
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	2 cut(s)	79, 437
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	295
BstSLI	GKGCMC	1 cut(s)	532
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	223
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	89, 530
BtsCI	GGATG	1 cut(s)	727
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	4 cut(s)	77, 435, 439, 582
CaiI	CAGNNNCTG	1 cut(s)	177
Cfr13I	GGNCC	4 cut(s)	135, 528, 529, 595
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	76, 434
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	543, 585
DpnI	GATC	2 cut(s)	225, 378
DpnII	GATC	2 cut(s)	223, 376
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco24I	GRGCYC	1 cut(s)	532
Eco47I	GGWCC	2 cut(s)	135, 595
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	532
FaeI	CATG	2 cut(s)	79, 437
FaiI	YATR	8 cut(s)	77, 150, 164, 204, 435, 600, 615, 687
FatI	CATG	2 cut(s)	75, 433
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	518
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	1 cut(s)	518
FspBI	CTAG	3 cut(s)	140, 477, 727
GluI	GCNGC	1 cut(s)	518
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	89, 530
Hin1II	CATG	2 cut(s)	79, 437
HinfI	GANTC	4 cut(s)	339, 368, 605, 654
HphI	GGTGA	2 cut(s)	140, 338
Hpy188I	TCNGA	2 cut(s)	19, 183
Hpy188III	TCNNGA	3 cut(s)	110, 458, 719
HpyAV	CCTTC	1 cut(s)	586
HpyCH4III	ACNGT	2 cut(s)	179, 275
HpyCH4V	TGCA	2 cut(s)	75, 517
HpyF3I	CTNAG	2 cut(s)	543, 585
Hsp92II	CATG	2 cut(s)	79, 437
Kzo9I	GATC	2 cut(s)	223, 376
LmnI	GCTCC	2 cut(s)	26, 430
LpnPI	CCDG	9 cut(s)	95, 118, 138, 157, 294, 321, 365, 387, 704
Lsp1109I	GCAGC	1 cut(s)	529
MaeI	CTAG	3 cut(s)	140, 477, 727
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	225, 378
MboI	GATC	2 cut(s)	223, 376
MboII	GAAGA	6 cut(s)	203, 260, 374, 411, 563, 683
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	412, 532
MluCI	AATT	3 cut(s)	145, 347, 565
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	9 cut(s)	79, 106, 110, 238, 271, 313, 421, 465, 582
MroXI	GAANNNNTTC	1 cut(s)	694
MseI	TTAA	1 cut(s)	420
MslI	CAYNNNNRTG	3 cut(s)	218, 393, 663
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	223, 376
NlaIII	CATG	2 cut(s)	79, 437
NlaIV	GGNNCC	3 cut(s)	137, 530, 531
NmuCI	GTSAC	1 cut(s)	128
NspI	RCATGY	2 cut(s)	79, 437
PaeI	GCATGC	2 cut(s)	79, 437
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	4 cut(s)	339, 368, 605, 654
PkrI	GCNGC	1 cut(s)	519
PsiI	TTATAA	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	3 cut(s)	137, 530, 531
PspOMI	GGGCCC	1 cut(s)	528
PspPI	GGNCC	4 cut(s)	135, 528, 529, 595
PsrI	GAACNNNNNNTAC	2 cut(s)	25, 57
PstNI	CAGNNNCTG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	3 cut(s)	218, 393, 663
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	518
Sau3AI	GATC	2 cut(s)	223, 376
Sau96I	GGNCC	4 cut(s)	135, 528, 529, 595
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	2 cut(s)	412, 532
SetI	ASST	5 cut(s)	43, 176, 324, 457, 511
SfcI	CTRYAG	1 cut(s)	295
SinI	GGWCC	2 cut(s)	135, 595
SmiMI	CAYNNNNRTG	3 cut(s)	218, 393, 663
SmlI	CTYRAG	2 cut(s)	411, 456
SmoI	CTYRAG	2 cut(s)	411, 456
SphI	GCATGC	2 cut(s)	79, 437
Sse9I	AATT	3 cut(s)	145, 347, 565
SsiI	CCGC	1 cut(s)	582
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	3 cut(s)	140, 477, 727
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	2 cut(s)	179, 275
TasI	AATT	3 cut(s)	145, 347, 565
TfiI	GAWTC	4 cut(s)	339, 368, 605, 654
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	3 cut(s)	191, 381, 684
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	135, 595
XapI	RAATTY	1 cut(s)	565
XceI	RCATGY	2 cut(s)	79, 437
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	3 cut(s)	140, 477, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.