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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52950 AT5G52950 |
| fragaria_vesca | FvH4_7g30790 |
| malus_domestica | MD01G1213200.v1.1 MD01G1213400.v1.1 MD07G1283200.v1.1 |
| prunus_persica | Prupe.2G305400_v2.0.a1 |
| pyrus_communis | pycom01g22430 pycom07g25730 |
| rosa_chinensis | RchiOBHm_Chr1g0379731 |
| rosa_laevigata | RLG00000026358 RLG00000026362 |
| rosa_multiflora | Rmu_co8427163.1_g000001 Rmu_sc0013028.1_g000010 Rmu_sc0014259.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00279930 |
| rosa_rugosa | Rorug01G0415100 |
| rosa_samantha | Rh1AG438600 Rh1AG439100 Rh1BG395100 Rh1CG408200 Rh1CG408400 Rh1DG425500 Rh1DG426000 Rh6CG162800 Rh6DG154400 Rh7CG443300 |
| rosa_wichuraiana | Rw1G038200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1683 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 404 |
| AccB1I | GGYRCC | 1 cut(s) | 1264 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 815 |
| AccII | CGCG | 2 cut(s) | 324, 1064 |
| AciI | CCGC | 9 cut(s) | 120, 132, 212, 312, 322, 360, 1435, 1564, 1993 |
| AclWI | GGATC | 5 cut(s) | 18, 226, 407, 1127, 1962 |
| AcsI | RAATTY | 8 cut(s) | 515, 1003, 1048, 1103, 1112, 1579, 1870, 1916 |
| AcuI | CTGAAG | 2 cut(s) | 169, 1049 |
| AfaI | GTAC | 1 cut(s) | 495 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 422, 526, 815, 1756, 1862 |
| AflII | CTTAAG | 1 cut(s) | 1364 |
| AgsI | TTSAA | 9 cut(s) | 280, 629, 756, 935, 949, 1332, 1634, 1898, 1984 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 331 |
| AjnI | CCWGG | 4 cut(s) | 265, 392, 1165, 1670 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1493, 1525 |
| AluBI | AGCT | 7 cut(s) | 18, 107, 376, 971, 1645, 1907, 1940 |
| AluI | AGCT | 7 cut(s) | 18, 107, 376, 971, 1645, 1907, 1940 |
| Alw21I | GWGCWC | 2 cut(s) | 20, 384 |
| Alw26I | GTCTC | 2 cut(s) | 884, 1329 |
| Alw44I | GTGCAC | 1 cut(s) | 380 |
| AlwI | GGATC | 5 cut(s) | 18, 226, 407, 1127, 1962 |
| Ama87I | CYCGRG | 2 cut(s) | 342, 881 |
| AoxI | GGCC | 3 cut(s) | 268, 1523, 1747 |
| ApaLI | GTGCAC | 1 cut(s) | 380 |
| ApeKI | GCWGC | 5 cut(s) | 52, 214, 968, 1625, 1907 |
| ApoI | RAATTY | 8 cut(s) | 515, 1003, 1048, 1103, 1112, 1579, 1870, 1916 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1413 |
| AspLEI | GCGC | 3 cut(s) | 57, 372, 1064 |
| AspS9I | GGNCC | 5 cut(s) | 269, 397, 459, 1513, 1523 |
| AsuC2I | CCSGG | 3 cut(s) | 343, 344, 581 |
| AsuHPI | GGTGA | 5 cut(s) | 109, 548, 680, 686, 1253 |
| AsuII | TTCGAA | 2 cut(s) | 434, 1109 |
| AsuNHI | GCTAGC | 1 cut(s) | 1225 |
| AvaI | CYCGRG | 2 cut(s) | 342, 881 |
| AvaII | GGWCC | 3 cut(s) | 397, 459, 1513 |
| BaeGI | GKGCMC | 2 cut(s) | 384, 1125 |
| BanI | GGYRCC | 1 cut(s) | 1264 |
| BanII | GRGCYC | 1 cut(s) | 20 |
| BauI | CACGAG | 1 cut(s) | 377 |
| Bbv12I | GWGCWC | 2 cut(s) | 20, 384 |
| BbvI | GCAGC | 5 cut(s) | 64, 201, 980, 1612, 1894 |
| BccI | CCATC | 6 cut(s) | 280, 735, 1169, 1547, 1792, 1967 |
| BceAI | ACGGC | 2 cut(s) | 58, 119 |
| BciT130I | CCWGG | 4 cut(s) | 267, 394, 1167, 1672 |
| BcnI | CCSGG | 3 cut(s) | 343, 344, 581 |
| BcoDI | GTCTC | 2 cut(s) | 884, 1329 |
| BfaI | CTAG | 7 cut(s) | 71, 960, 992, 1217, 1226, 1646, 1737 |
| BfmI | CTRYAG | 1 cut(s) | 1542 |
| BfrI | CTTAAG | 1 cut(s) | 1364 |
| BglII | AGATCT | 1 cut(s) | 1597 |
| BisI | GCNGC | 8 cut(s) | 53, 132, 215, 322, 360, 969, 1626, 1908 |
| BlsI | GCNGC | 8 cut(s) | 54, 133, 216, 323, 361, 970, 1627, 1909 |
| Bme1390I | CCNGG | 7 cut(s) | 267, 343, 344, 394, 581, 1167, 1672 |
| Bme18I | GGWCC | 3 cut(s) | 397, 459, 1513 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 331 |
| BmeT110I | CYCGRG | 2 cut(s) | 342, 881 |
| BmgT120I | GGNCC | 5 cut(s) | 269, 397, 459, 1513, 1523 |
| BmiI | GGNNCC | 3 cut(s) | 398, 399, 1266 |
| BmrFI | CCNGG | 7 cut(s) | 267, 343, 344, 394, 581, 1167, 1672 |
| BmrI | ACTGGG | 3 cut(s) | 1263, 1530, 1765 |
| BmsI | GCATC | 4 cut(s) | 14, 66, 595, 967 |
| BmtI | GCTAGC | 1 cut(s) | 1229 |
| BmuI | ACTGGG | 3 cut(s) | 1263, 1530, 1765 |
| Bpu14I | TTCGAA | 2 cut(s) | 434, 1109 |
| BpuEI | CTTGAG | 1 cut(s) | 1306 |
| BpuMI | CCSGG | 3 cut(s) | 343, 344, 581 |
| Bsa29I | ATCGAT | 2 cut(s) | 1962, 1966 |
| BsaJI | CCNNGG | 7 cut(s) | 265, 341, 342, 393, 402, 580, 1671 |
| BsaWI | WCCGGW | 1 cut(s) | 415 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 272, 302, 1305, 1335 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 422, 526, 815, 1756, 1862 |
| Bse1I | ACTGG | 3 cut(s) | 1269, 1525, 1771 |
| BseBI | CCWGG | 4 cut(s) | 267, 394, 1167, 1672 |
| BseCI | ATCGAT | 2 cut(s) | 1962, 1966 |
| BseDI | CCNNGG | 7 cut(s) | 265, 341, 342, 393, 402, 580, 1671 |
| BseGI | GGATG | 5 cut(s) | 746, 824, 1411, 1558, 1722 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 422, 526, 815, 1756, 1862 |
| BseMII | CTCAG | 2 cut(s) | 1436, 1653 |
| BseNI | ACTGG | 3 cut(s) | 1269, 1525, 1771 |
| BseRI | GAGGAG | 6 cut(s) | 56, 150, 157, 190, 211, 214 |
| BseSI | GKGCMC | 2 cut(s) | 384, 1125 |
| BseXI | GCAGC | 5 cut(s) | 64, 201, 980, 1612, 1894 |
| BseYI | CCCAGC | 1 cut(s) | 103 |
| Bsh1236I | CGCG | 2 cut(s) | 324, 1064 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1966 |
| BshFI | GGCC | 3 cut(s) | 270, 1525, 1749 |
| BshNI | GGYRCC | 1 cut(s) | 1264 |
| BshVI | ATCGAT | 2 cut(s) | 1962, 1966 |
| BsiEI | CGRYCG | 1 cut(s) | 1966 |
| BsiHKAI | GWGCWC | 2 cut(s) | 20, 384 |
| BsiHKCI | CYCGRG | 2 cut(s) | 342, 881 |
| BsiSI | CCGG | 4 cut(s) | 21, 343, 416, 580 |
| BslFI | GGGAC | 1 cut(s) | 410 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 422, 526, 815, 1756, 1862 |
| BsmAI | GTCTC | 2 cut(s) | 884, 1329 |
| BsmFI | GGGAC | 1 cut(s) | 410 |
| BsmI | GAATGC | 6 cut(s) | 565, 920, 980, 1252, 1507, 1537 |
| BsnI | GGCC | 3 cut(s) | 270, 1525, 1749 |
| BsoBI | CYCGRG | 2 cut(s) | 342, 881 |
| Bsp119I | TTCGAA | 2 cut(s) | 434, 1109 |
| Bsp1286I | GDGCHC | 3 cut(s) | 20, 384, 1125 |
| Bsp143I | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| BspACI | CCGC | 9 cut(s) | 120, 132, 212, 312, 322, 360, 1435, 1564, 1993 |
| BspANI | GGCC | 3 cut(s) | 270, 1525, 1749 |
| BspCNI | CTCAG | 2 cut(s) | 1435, 1652 |
| BspDI | ATCGAT | 2 cut(s) | 1962, 1966 |
| BspFNI | CGCG | 2 cut(s) | 324, 1064 |
| BspHI | TCATGA | 1 cut(s) | 999 |
| BspLI | GGNNCC | 3 cut(s) | 398, 399, 1266 |
| BspOI | GCTAGC | 1 cut(s) | 1229 |
| BspPI | GGATC | 5 cut(s) | 18, 226, 407, 1127, 1962 |
| BspT104I | TTCGAA | 2 cut(s) | 434, 1109 |
| BspT107I | GGYRCC | 1 cut(s) | 1264 |
| BspTI | CTTAAG | 1 cut(s) | 1364 |
| BsrI | ACTGG | 3 cut(s) | 1269, 1525, 1771 |
| BssECI | CCNNGG | 7 cut(s) | 265, 341, 342, 393, 402, 580, 1671 |
| BssMI | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| BssSI | CACGAG | 1 cut(s) | 377 |
| Bst2BI | CACGAG | 1 cut(s) | 377 |
| Bst2UI | CCWGG | 4 cut(s) | 267, 394, 1167, 1672 |
| Bst4CI | ACNGT | 4 cut(s) | 506, 1340, 1378, 1882 |
| Bst6I | CTCTTC | 2 cut(s) | 182, 1650 |
| BstAFI | CTTAAG | 1 cut(s) | 1364 |
| BstBI | TTCGAA | 2 cut(s) | 434, 1109 |
| BstC8I | GCNNGC | 3 cut(s) | 374, 1227, 1742 |
| BstDEI | CTNAG | 3 cut(s) | 228, 1422, 1639 |
| BstDSI | CCRYGG | 1 cut(s) | 402 |
| BstF5I | GGATG | 5 cut(s) | 746, 824, 1411, 1558, 1722 |
| BstFNI | CGCG | 2 cut(s) | 324, 1064 |
| BstHHI | GCGC | 3 cut(s) | 57, 372, 1064 |
| BstKTI | GATC | 9 cut(s) | 13, 234, 415, 931, 1135, 1600, 1925, 1966, 1970 |
| BstMAI | GTCTC | 2 cut(s) | 884, 1329 |
| BstMBI | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| BstMCI | CGRYCG | 1 cut(s) | 1966 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 128, 977, 1746 |
| BstNI | CCWGG | 4 cut(s) | 267, 394, 1167, 1672 |
| BstSCI | CCNGG | 7 cut(s) | 265, 341, 342, 392, 579, 1165, 1670 |
| BstSFI | CTRYAG | 1 cut(s) | 1542 |
| BstSLI | GKGCMC | 2 cut(s) | 384, 1125 |
| BstUI | CGCG | 2 cut(s) | 324, 1064 |
| BstV1I | GCAGC | 5 cut(s) | 64, 201, 980, 1612, 1894 |
| BstX2I | RGATCY | 2 cut(s) | 231, 1597 |
| BstYI | RGATCY | 2 cut(s) | 231, 1597 |
| Bsu15I | ATCGAT | 2 cut(s) | 1962, 1966 |
| BsuRI | GGCC | 3 cut(s) | 270, 1525, 1749 |
| BsuTUI | ATCGAT | 2 cut(s) | 1962, 1966 |
| BtgI | CCRYGG | 1 cut(s) | 402 |
| BtsCI | GGATG | 5 cut(s) | 746, 824, 1411, 1558, 1722 |
| BtsI | GCAGTG | 1 cut(s) | 1236 |
| BtsIMutI | CAGTG | 2 cut(s) | 1236, 1345 |
| Cac8I | GCNNGC | 3 cut(s) | 374, 1227, 1742 |
| CciI | TCATGA | 1 cut(s) | 999 |
| CfoI | GCGC | 3 cut(s) | 57, 372, 1064 |
| Cfr13I | GGNCC | 5 cut(s) | 269, 397, 459, 1513, 1523 |
| Cfr9I | CCCGGG | 1 cut(s) | 342 |
| ClaI | ATCGAT | 2 cut(s) | 1962, 1966 |
| CsiI | ACCWGGT | 1 cut(s) | 1165 |
| Csp6I | GTAC | 1 cut(s) | 494 |
| CviAII | CATG | 3 cut(s) | 1000, 1310, 1605 |
| CviQI | GTAC | 1 cut(s) | 494 |
| DdeI | CTNAG | 3 cut(s) | 228, 1422, 1639 |
| DpnI | GATC | 9 cut(s) | 12, 233, 414, 930, 1134, 1599, 1924, 1965, 1969 |
| DpnII | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 404 |
| DriI | GACNNNNNGTC | 1 cut(s) | 331 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 404 |
| Eam1104I | CTCTTC | 2 cut(s) | 182, 1650 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 331 |
| EarI | CTCTTC | 2 cut(s) | 182, 1650 |
| Ecl136II | GAGCTC | 1 cut(s) | 18 |
| Eco24I | GRGCYC | 1 cut(s) | 20 |
| Eco47I | GGWCC | 3 cut(s) | 397, 459, 1513 |
| Eco53kI | GAGCTC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 2 cut(s) | 169, 1049 |
| Eco88I | CYCGRG | 2 cut(s) | 342, 881 |
| EcoICRI | GAGCTC | 1 cut(s) | 18 |
| EcoO109I | RGGNCCY | 1 cut(s) | 397 |
| EcoRI | GAATTC | 2 cut(s) | 515, 1003 |
| EcoRII | CCWGG | 4 cut(s) | 265, 392, 1165, 1670 |
| EcoT22I | ATGCAT | 2 cut(s) | 610, 982 |
| EcoT38I | GRGCYC | 1 cut(s) | 20 |
| FaeI | CATG | 3 cut(s) | 1003, 1313, 1608 |
| FaqI | GGGAC | 1 cut(s) | 410 |
| FatI | CATG | 3 cut(s) | 999, 1309, 1604 |
| FauI | CCCGC | 2 cut(s) | 319, 1428 |
| Fnu4HI | GCNGC | 8 cut(s) | 53, 132, 215, 322, 360, 969, 1626, 1908 |
| FokI | GGATG | 5 cut(s) | 753, 811, 1418, 1565, 1729 |
| FriOI | GRGCYC | 1 cut(s) | 20 |
| Fsp4HI | GCNGC | 8 cut(s) | 53, 132, 215, 322, 360, 969, 1626, 1908 |
| FspBI | CTAG | 7 cut(s) | 71, 960, 992, 1217, 1226, 1646, 1737 |
| GlaI | GCGC | 3 cut(s) | 56, 371, 1063 |
| GluI | GCNGC | 8 cut(s) | 53, 132, 215, 322, 360, 969, 1626, 1908 |
| GsaI | CCCAGC | 1 cut(s) | 107 |
| HaeIII | GGCC | 3 cut(s) | 270, 1525, 1749 |
| HapII | CCGG | 4 cut(s) | 21, 343, 416, 580 |
| HhaI | GCGC | 3 cut(s) | 57, 372, 1064 |
| Hin1II | CATG | 3 cut(s) | 1003, 1313, 1608 |
| Hin6I | GCGC | 3 cut(s) | 55, 370, 1062 |
| HinP1I | GCGC | 3 cut(s) | 55, 370, 1062 |
| HindIII | AAGCTT | 1 cut(s) | 1938 |
| HinfI | GANTC | 7 cut(s) | 443, 542, 576, 761, 877, 1279, 1766 |
| HpaII | CCGG | 4 cut(s) | 21, 343, 416, 580 |
| HphI | GGTGA | 5 cut(s) | 109, 548, 680, 686, 1253 |
| Hpy166II | GTNNAC | 6 cut(s) | 382, 494, 1025, 1234, 1663, 1835 |
| Hpy8I | GTNNAC | 6 cut(s) | 382, 494, 1025, 1234, 1663, 1835 |
| Hpy99I | CGWCG | 1 cut(s) | 1936 |
| HpyAV | CCTTC | 8 cut(s) | 155, 163, 193, 1024, 1145, 1403, 1551, 1866 |
| HpyCH4III | ACNGT | 4 cut(s) | 506, 1340, 1378, 1882 |
| HpyCH4IV | ACGT | 1 cut(s) | 1931 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 128, 977, 1746 |
| HpyF3I | CTNAG | 3 cut(s) | 228, 1422, 1639 |
| HpySE526I | ACGT | 1 cut(s) | 1931 |
| Hsp92II | CATG | 3 cut(s) | 1003, 1313, 1608 |
| HspAI | GCGC | 3 cut(s) | 55, 370, 1062 |
| KflI | GGGWCCC | 1 cut(s) | 397 |
| Kzo9I | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| LmnI | GCTCC | 5 cut(s) | 15, 23, 112, 1313, 1448 |
| Lsp1109I | GCAGC | 5 cut(s) | 64, 201, 980, 1612, 1894 |
| LweI | GCATC | 4 cut(s) | 14, 66, 595, 967 |
| MabI | ACCWGGT | 1 cut(s) | 1165 |
| MaeI | CTAG | 7 cut(s) | 71, 960, 992, 1217, 1226, 1646, 1737 |
| MaeII | ACGT | 1 cut(s) | 1931 |
| MaeIII | GTNAC | 3 cut(s) | 418, 536, 1590 |
| MalI | GATC | 9 cut(s) | 12, 233, 414, 930, 1134, 1599, 1924, 1965, 1969 |
| MboI | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| MboII | GAAGA | 8 cut(s) | 169, 187, 923, 961, 1374, 1492, 1667, 1839 |
| MfeI | CAATTG | 1 cut(s) | 935 |
| MflI | RGATCY | 2 cut(s) | 231, 1597 |
| MhlI | GDGCHC | 3 cut(s) | 20, 384, 1125 |
| MlyI | GAGTC | 2 cut(s) | 551, 886 |
| MmeI | TCCRAC | 2 cut(s) | 1791, 1914 |
| Mph1103I | ATGCAT | 2 cut(s) | 610, 982 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1413 |
| MseI | TTAA | 3 cut(s) | 1365, 1466, 1728 |
| MspA1I | CMGCKG | 2 cut(s) | 214, 971 |
| MspCI | CTTAAG | 1 cut(s) | 1364 |
| MspI | CCGG | 4 cut(s) | 21, 343, 416, 580 |
| MspR9I | CCNGG | 7 cut(s) | 267, 343, 344, 394, 581, 1167, 1672 |
| MunI | CAATTG | 1 cut(s) | 935 |
| Mva1269I | GAATGC | 6 cut(s) | 565, 920, 980, 1252, 1507, 1537 |
| MvaI | CCWGG | 4 cut(s) | 267, 394, 1167, 1672 |
| MvnI | CGCG | 2 cut(s) | 324, 1064 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 128, 977, 1746 |
| NciI | CCSGG | 3 cut(s) | 343, 344, 581 |
| NdeII | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| NheI | GCTAGC | 1 cut(s) | 1225 |
| NlaIII | CATG | 3 cut(s) | 1003, 1313, 1608 |
| NlaIV | GGNNCC | 3 cut(s) | 398, 399, 1266 |
| NmuCI | GTSAC | 1 cut(s) | 536 |
| NsiI | ATGCAT | 2 cut(s) | 610, 982 |
| NspV | TTCGAA | 2 cut(s) | 434, 1109 |
| PaeR7I | CTCGAG | 1 cut(s) | 881 |
| PagI | TCATGA | 1 cut(s) | 999 |
| PctI | GAATGC | 6 cut(s) | 565, 920, 980, 1252, 1507, 1537 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1413 |
| PfeI | GAWTC | 5 cut(s) | 443, 576, 761, 1279, 1766 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 815 |
| PkrI | GCNGC | 8 cut(s) | 54, 133, 216, 323, 361, 970, 1627, 1909 |
| Ple19I | CGATCG | 1 cut(s) | 1966 |
| PleI | GAGTC | 2 cut(s) | 550, 885 |
| PpsI | GAGTC | 2 cut(s) | 550, 885 |
| PpuMI | RGGWCCY | 1 cut(s) | 397 |
| PsiI | TTATAA | 1 cut(s) | 1683 |
| Psp124BI | GAGCTC | 1 cut(s) | 20 |
| Psp5II | RGGWCCY | 1 cut(s) | 397 |
| Psp6I | CCWGG | 4 cut(s) | 265, 392, 1165, 1670 |
| PspFI | CCCAGC | 1 cut(s) | 103 |
| PspGI | CCWGG | 4 cut(s) | 265, 392, 1165, 1670 |
| PspN4I | GGNNCC | 3 cut(s) | 398, 399, 1266 |
| PspPI | GGNCC | 5 cut(s) | 269, 397, 459, 1513, 1523 |
| PspPPI | RGGWCCY | 1 cut(s) | 397 |
| PsuI | RGATCY | 2 cut(s) | 231, 1597 |
| PvuI | CGATCG | 1 cut(s) | 1966 |
| PvuII | CAGCTG | 1 cut(s) | 971 |
| RsaI | GTAC | 1 cut(s) | 495 |
| RsaNI | GTAC | 1 cut(s) | 494 |
| SacI | GAGCTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 3 cut(s) | 1365, 1466, 1728 |
| SatI | GCNGC | 8 cut(s) | 53, 132, 215, 322, 360, 969, 1626, 1908 |
| Sau3AI | GATC | 9 cut(s) | 10, 231, 412, 928, 1132, 1597, 1922, 1963, 1967 |
| Sau96I | GGNCC | 5 cut(s) | 269, 397, 459, 1513, 1523 |
| SchI | GAGTC | 2 cut(s) | 551, 886 |
| ScrFI | CCNGG | 7 cut(s) | 267, 343, 344, 394, 581, 1167, 1672 |
| SduI | GDGCHC | 3 cut(s) | 20, 384, 1125 |
| SexAI | ACCWGGT | 1 cut(s) | 1165 |
| SfaNI | GCATC | 4 cut(s) | 14, 66, 595, 967 |
| SfcI | CTRYAG | 1 cut(s) | 1542 |
| Sfr274I | CTCGAG | 1 cut(s) | 881 |
| SfuI | TTCGAA | 2 cut(s) | 434, 1109 |
| SinI | GGWCC | 3 cut(s) | 397, 459, 1513 |
| SlaI | CTCGAG | 1 cut(s) | 881 |
| SmaI | CCCGGG | 1 cut(s) | 344 |
| SmlI | CTYRAG | 3 cut(s) | 881, 1285, 1364 |
| SmoI | CTYRAG | 3 cut(s) | 881, 1285, 1364 |
| SsiI | CCGC | 9 cut(s) | 120, 132, 212, 312, 322, 360, 1435, 1564, 1993 |
| SspMI | CTAG | 7 cut(s) | 71, 960, 992, 1217, 1226, 1646, 1737 |
| SstI | GAGCTC | 1 cut(s) | 20 |
| StyD4I | CCNGG | 7 cut(s) | 265, 341, 342, 392, 579, 1165, 1670 |
| TaaI | ACNGT | 4 cut(s) | 506, 1340, 1378, 1882 |
| TaiI | ACGT | 1 cut(s) | 1934 |
| TaqI | TCGA | 8 cut(s) | 434, 446, 717, 764, 882, 1109, 1962, 1966 |
| TauI | GCSGC | 3 cut(s) | 134, 324, 362 |
| TfiI | GAWTC | 5 cut(s) | 443, 576, 761, 1279, 1766 |
| Tru1I | TTAA | 3 cut(s) | 1365, 1466, 1728 |
| Tru9I | TTAA | 3 cut(s) | 1365, 1466, 1728 |
| TscAI | CASTG | 2 cut(s) | 1236, 1345 |
| TseFI | GTSAC | 1 cut(s) | 536 |
| TseI | GCWGC | 5 cut(s) | 52, 214, 968, 1625, 1907 |
| Tsp45I | GTSAC | 1 cut(s) | 536 |
| TspDTI | ATGAA | 8 cut(s) | 669, 813, 1016, 1422, 1493, 1733, 1839, 1917 |
| TspMI | CCCGGG | 1 cut(s) | 342 |
| TspRI | CASTG | 2 cut(s) | 1236, 1345 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 815 |
| Vha464I | CTTAAG | 1 cut(s) | 1364 |
| VneI | GTGCAC | 1 cut(s) | 380 |
| VpaK11BI | GGWCC | 3 cut(s) | 397, 459, 1513 |
| XapI | RAATTY | 8 cut(s) | 515, 1003, 1048, 1103, 1112, 1579, 1870, 1916 |
| XbaI | TCTAGA | 1 cut(s) | 1216 |
| XhoI | CTCGAG | 1 cut(s) | 881 |
| XmaI | CCCGGG | 1 cut(s) | 342 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1413 |
| XspI | CTAG | 7 cut(s) | 71, 960, 992, 1217, 1226, 1646, 1737 |
| Zsp2I | ATGCAT | 2 cut(s) | 610, 982 |