No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G52950 AT5G52950 |
| fragaria_vesca | FvH4_7g30790 |
| malus_domestica | MD01G1213200.v1.1 MD01G1213400.v1.1 MD07G1283200.v1.1 |
| prunus_persica | Prupe.2G305400_v2.0.a1 |
| pyrus_communis | pycom01g22430 pycom07g25730 |
| rosa_chinensis | RchiOBHm_Chr1g0379731 |
| rosa_laevigata | RLG00000026358 RLG00000026362 |
| rosa_multiflora | Rmu_co8427163.1_g000001 Rmu_sc0013028.1_g000010 Rmu_sc0014259.1_g000002 |
| rosa_roxburghii | Rroxscaffold_4G00279930 |
| rosa_rugosa | Rorug01G0415100 |
| rosa_samantha | Rh1AG438600 Rh1AG439100 Rh1BG395100 Rh1CG408200 Rh1CG408400 Rh1DG425500 Rh1DG426000 Rh6CG162800 Rh6DG154400 Rh7CG443300 |
| rosa_wichuraiana | Rw1G038200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1789 |
| Acc36I | ACCTGC | 1 cut(s) | 2445 |
| AccB1I | GGYRCC | 2 cut(s) | 1276, 2785 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 827, 2049 |
| AccI | GTMKAC | 2 cut(s) | 72, 876 |
| AccII | CGCG | 1 cut(s) | 594 |
| AccIII | TCCGGA | 1 cut(s) | 2286 |
| AciI | CCGC | 7 cut(s) | 312, 372, 594, 1899, 2660, 2860, 2988 |
| AclI | AACGTT | 1 cut(s) | 2932 |
| AclWI | GGATC | 4 cut(s) | 5, 1139, 1969, 2159 |
| AcuI | CTGAAG | 5 cut(s) | 169, 1061, 1851, 2229, 2253 |
| AfaI | GTAC | 3 cut(s) | 665, 1109, 2459 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 20, 538, 827, 1093, 1765, 2049, 2742, 2921 |
| AflII | CTTAAG | 1 cut(s) | 1376 |
| AjnI | CCWGG | 3 cut(s) | 404, 1002, 1086 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1802, 1834 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2241, 2273 |
| AluBI | AGCT | 6 cut(s) | 232, 388, 1663, 1916, 2756, 2952 |
| AluI | AGCT | 6 cut(s) | 232, 388, 1663, 1916, 2756, 2952 |
| Alw21I | GWGCWC | 2 cut(s) | 66, 2758 |
| Alw26I | GTCTC | 3 cut(s) | 896, 1341, 2459 |
| AlwI | GGATC | 4 cut(s) | 5, 1139, 1969, 2159 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2231, 2460 |
| Ama87I | CYCGRG | 2 cut(s) | 354, 893 |
| Aor13HI | TCCGGA | 1 cut(s) | 2286 |
| AoxI | GGCC | 1 cut(s) | 2808 |
| ApaI | GGGCCC | 1 cut(s) | 2812 |
| ApeKI | GCWGC | 6 cut(s) | 52, 1643, 1916, 2135, 2949, 2952 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2825, 2857 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1049, 1425 |
| AspLEI | GCGC | 2 cut(s) | 57, 384 |
| AspS9I | GGNCC | 5 cut(s) | 409, 1471, 2808, 2809, 2875 |
| AsuC2I | CCSGG | 2 cut(s) | 355, 356 |
| AsuHPI | GGTGA | 9 cut(s) | 25, 35, 311, 828, 1043, 1265, 1421, 1533, 2126 |
| AvaI | CYCGRG | 2 cut(s) | 354, 893 |
| AvaII | GGWCC | 3 cut(s) | 409, 1471, 2875 |
| AxyI | CCTNAGG | 1 cut(s) | 1434 |
| BaeGI | GKGCMC | 3 cut(s) | 1137, 2692, 2812 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2288, 2321 |
| BanI | GGYRCC | 2 cut(s) | 1276, 2785 |
| BanII | GRGCYC | 3 cut(s) | 2652, 2758, 2812 |
| BbsI | GAAGAC | 1 cut(s) | 1953 |
| Bbv12I | GWGCWC | 2 cut(s) | 66, 2758 |
| BbvCI | CCTCAGC | 1 cut(s) | 2139 |
| BbvI | GCAGC | 6 cut(s) | 64, 1655, 1903, 2122, 2939, 2961 |
| BccI | CCATC | 6 cut(s) | 337, 747, 1181, 1552, 2284, 2390 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2767, 2801 |
| BciT130I | CCWGG | 3 cut(s) | 406, 1004, 1088 |
| BcnI | CCSGG | 2 cut(s) | 355, 356 |
| BcoDI | GTCTC | 3 cut(s) | 896, 1341, 2459 |
| BfaI | CTAG | 4 cut(s) | 479, 972, 1664, 1755 |
| BfmI | CTRYAG | 3 cut(s) | 40, 1560, 2300 |
| BfrI | CTTAAG | 1 cut(s) | 1376 |
| BfuAI | ACCTGC | 1 cut(s) | 2445 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2946 |
| BisI | GCNGC | 7 cut(s) | 53, 372, 1644, 1917, 2136, 2950, 2953 |
| BlsI | GCNGC | 7 cut(s) | 54, 373, 1645, 1918, 2137, 2951, 2954 |
| Bme1390I | CCNGG | 5 cut(s) | 355, 356, 406, 1004, 1088 |
| Bme18I | GGWCC | 3 cut(s) | 409, 1471, 2875 |
| BmeT110I | CYCGRG | 2 cut(s) | 354, 893 |
| BmgT120I | GGNCC | 5 cut(s) | 409, 1471, 2808, 2809, 2875 |
| BmiI | GGNNCC | 8 cut(s) | 410, 411, 1278, 2532, 2787, 2810, 2811, 2887 |
| BmrFI | CCNGG | 5 cut(s) | 355, 356, 406, 1004, 1088 |
| BmrI | ACTGGG | 1 cut(s) | 2679 |
| BmsI | GCATC | 5 cut(s) | 14, 702, 1224, 2225, 2837 |
| BmuI | ACTGGG | 1 cut(s) | 2679 |
| BpiI | GAAGAC | 1 cut(s) | 1953 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2080, 2112 |
| BpmI | CTGGAG | 1 cut(s) | 2437 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2139 |
| BpuEI | CTTGAG | 2 cut(s) | 1250, 1318 |
| BpuMI | CCSGG | 2 cut(s) | 355, 356 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1524, 2565 |
| BsaJI | CCNNGG | 7 cut(s) | 353, 354, 405, 432, 1002, 1941, 2169 |
| BsaWI | WCCGGW | 2 cut(s) | 20, 2286 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1317, 1347, 1452, 1482 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 20, 538, 827, 1093, 1765, 2049, 2742, 2921 |
| Bse1I | ACTGG | 4 cut(s) | 1789, 2420, 2685, 3025 |
| Bse21I | CCTNAGG | 1 cut(s) | 1434 |
| Bse3DI | GCAATG | 1 cut(s) | 332 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1524, 2565 |
| BseAI | TCCGGA | 1 cut(s) | 2286 |
| BseBI | CCWGG | 3 cut(s) | 406, 1004, 1088 |
| BseDI | CCNNGG | 7 cut(s) | 353, 354, 405, 432, 1002, 1941, 2169 |
| BseJI | GATNNNNATC | 2 cut(s) | 1524, 2565 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 20, 538, 827, 1093, 1765, 2049, 2742, 2921 |
| BseMI | GCAATG | 1 cut(s) | 332 |
| BseMII | CTCAG | 4 cut(s) | 1448, 1524, 2130, 2150 |
| BseNI | ACTGG | 4 cut(s) | 1789, 2420, 2685, 3025 |
| BseRI | GAGGAG | 8 cut(s) | 56, 116, 121, 157, 211, 214, 2088, 2758 |
| BseSI | GKGCMC | 3 cut(s) | 1137, 2692, 2812 |
| BseXI | GCAGC | 6 cut(s) | 64, 1655, 1903, 2122, 2939, 2961 |
| BsgI | GTGCAG | 1 cut(s) | 1283 |
| Bsh1236I | CGCG | 1 cut(s) | 594 |
| BshFI | GGCC | 1 cut(s) | 2810 |
| BshNI | GGYRCC | 2 cut(s) | 1276, 2785 |
| BsiHKAI | GWGCWC | 2 cut(s) | 66, 2758 |
| BsiHKCI | CYCGRG | 2 cut(s) | 354, 893 |
| BsiSI | CCGG | 3 cut(s) | 21, 355, 2287 |
| BslFI | GGGAC | 1 cut(s) | 422 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 20, 538, 827, 1093, 1765, 2049, 2742, 2921 |
| BsmAI | GTCTC | 3 cut(s) | 896, 1341, 2459 |
| BsmFI | GGGAC | 1 cut(s) | 422 |
| BsmI | GAATGC | 3 cut(s) | 932, 1519, 1555 |
| BsnI | GGCC | 1 cut(s) | 2810 |
| BsoBI | CYCGRG | 2 cut(s) | 354, 893 |
| Bsp120I | GGGCCC | 1 cut(s) | 2808 |
| Bsp1286I | GDGCHC | 6 cut(s) | 66, 1137, 2652, 2692, 2758, 2812 |
| Bsp13I | TCCGGA | 1 cut(s) | 2286 |
| Bsp143I | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| BspACI | CCGC | 7 cut(s) | 312, 372, 594, 1899, 2660, 2860, 2988 |
| BspANI | GGCC | 1 cut(s) | 2810 |
| BspCNI | CTCAG | 4 cut(s) | 1447, 1525, 2131, 2151 |
| BspEI | TCCGGA | 1 cut(s) | 2286 |
| BspFNI | CGCG | 1 cut(s) | 594 |
| BspHI | TCATGA | 3 cut(s) | 729, 865, 1011 |
| BspLI | GGNNCC | 8 cut(s) | 410, 411, 1278, 2532, 2787, 2810, 2811, 2887 |
| BspMAI | CTGCAG | 1 cut(s) | 1564 |
| BspMI | ACCTGC | 1 cut(s) | 2445 |
| BspPI | GGATC | 4 cut(s) | 5, 1139, 1969, 2159 |
| BspT107I | GGYRCC | 2 cut(s) | 1276, 2785 |
| BspTI | CTTAAG | 1 cut(s) | 1376 |
| BsrDI | GCAATG | 1 cut(s) | 332 |
| BsrI | ACTGG | 4 cut(s) | 1789, 2420, 2685, 3025 |
| BssECI | CCNNGG | 7 cut(s) | 353, 354, 405, 432, 1002, 1941, 2169 |
| BssMI | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| BssT1I | CCWWGG | 1 cut(s) | 2169 |
| Bst2UI | CCWGG | 3 cut(s) | 406, 1004, 1088 |
| Bst4CI | ACNGT | 7 cut(s) | 518, 1352, 1390, 1891, 2304, 2462, 2555 |
| Bst6I | CTCTTC | 5 cut(s) | 175, 197, 1155, 1668, 2106 |
| BstAFI | CTTAAG | 1 cut(s) | 1376 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2324 |
| BstC8I | GCNNGC | 4 cut(s) | 386, 1564, 1897, 2715 |
| BstDEI | CTNAG | 4 cut(s) | 1434, 1533, 2139, 2159 |
| BstDSI | CCRYGG | 1 cut(s) | 432 |
| BstEII | GGTNACC | 1 cut(s) | 23 |
| BstFNI | CGCG | 1 cut(s) | 594 |
| BstHHI | GCGC | 2 cut(s) | 57, 384 |
| BstKTI | GATC | 7 cut(s) | 13, 420, 943, 1147, 1934, 1977, 2167 |
| BstMAI | GTCTC | 3 cut(s) | 896, 1341, 2459 |
| BstMBI | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 61, 2324, 2794, 2946 |
| BstNI | CCWGG | 3 cut(s) | 406, 1004, 1088 |
| BstNSI | RCATGY | 1 cut(s) | 2717 |
| BstPI | GGTNACC | 1 cut(s) | 23 |
| BstSCI | CCNGG | 5 cut(s) | 353, 354, 404, 1002, 1086 |
| BstSFI | CTRYAG | 3 cut(s) | 40, 1560, 2300 |
| BstSLI | GKGCMC | 3 cut(s) | 1137, 2692, 2812 |
| BstUI | CGCG | 1 cut(s) | 594 |
| BstV1I | GCAGC | 6 cut(s) | 64, 1655, 1903, 2122, 2939, 2961 |
| BstV2I | GAAGAC | 1 cut(s) | 1953 |
| BstX2I | RGATCY | 2 cut(s) | 1974, 2164 |
| BstYI | RGATCY | 2 cut(s) | 1974, 2164 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1434 |
| BsuRI | GGCC | 1 cut(s) | 2810 |
| BtgI | CCRYGG | 1 cut(s) | 432 |
| BtsI | GCAGTG | 5 cut(s) | 83, 212, 1075, 2007, 2203 |
| BtsIMutI | CAGTG | 8 cut(s) | 83, 212, 1075, 1357, 2007, 2203, 2560, 2692 |
| BveI | ACCTGC | 1 cut(s) | 2445 |
| Cac8I | GCNNGC | 4 cut(s) | 386, 1564, 1897, 2715 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2231, 2460 |
| CciI | TCATGA | 3 cut(s) | 729, 865, 1011 |
| CfoI | GCGC | 2 cut(s) | 57, 384 |
| Cfr13I | GGNCC | 5 cut(s) | 409, 1471, 2808, 2809, 2875 |
| Cfr9I | CCCGGG | 1 cut(s) | 354 |
| Csp6I | GTAC | 3 cut(s) | 664, 1108, 2458 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2179, 2214 |
| CviAII | CATG | 8 cut(s) | 395, 730, 866, 1012, 1623, 2714, 2937, 2985 |
| CviQI | GTAC | 3 cut(s) | 664, 1108, 2458 |
| DdeI | CTNAG | 4 cut(s) | 1434, 1533, 2139, 2159 |
| DpnI | GATC | 7 cut(s) | 12, 419, 942, 1146, 1933, 1976, 2166 |
| DpnII | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| DraI | TTTAAA | 2 cut(s) | 2212, 2866 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1789 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1789 |
| Eam1104I | CTCTTC | 5 cut(s) | 175, 197, 1155, 1668, 2106 |
| EarI | CTCTTC | 5 cut(s) | 175, 197, 1155, 1668, 2106 |
| EciI | GGCGGA | 1 cut(s) | 2649 |
| Ecl136II | GAGCTC | 1 cut(s) | 2756 |
| Eco130I | CCWWGG | 1 cut(s) | 2169 |
| Eco24I | GRGCYC | 3 cut(s) | 2652, 2758, 2812 |
| Eco32I | GATATC | 3 cut(s) | 94, 834, 2176 |
| Eco47I | GGWCC | 3 cut(s) | 409, 1471, 2875 |
| Eco53kI | GAGCTC | 1 cut(s) | 2756 |
| Eco57I | CTGAAG | 5 cut(s) | 169, 1061, 1851, 2229, 2253 |
| Eco81I | CCTNAGG | 1 cut(s) | 1434 |
| Eco88I | CYCGRG | 2 cut(s) | 354, 893 |
| Eco91I | GGTNACC | 1 cut(s) | 23 |
| EcoICRI | GAGCTC | 1 cut(s) | 2756 |
| EcoO109I | RGGNCCY | 2 cut(s) | 409, 2809 |
| EcoO65I | GGTNACC | 1 cut(s) | 23 |
| EcoRI | GAATTC | 3 cut(s) | 527, 1015, 2035 |
| EcoRII | CCWGG | 3 cut(s) | 404, 1002, 1086 |
| EcoRV | GATATC | 3 cut(s) | 94, 834, 2176 |
| EcoT14I | CCWWGG | 1 cut(s) | 2169 |
| EcoT22I | ATGCAT | 1 cut(s) | 622 |
| EcoT38I | GRGCYC | 3 cut(s) | 2652, 2758, 2812 |
| ErhI | CCWWGG | 1 cut(s) | 2169 |
| FaeI | CATG | 8 cut(s) | 398, 733, 869, 1015, 1626, 2717, 2940, 2988 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1121, 1153, 2064, 2096 |
| FaqI | GGGAC | 1 cut(s) | 422 |
| FatI | CATG | 8 cut(s) | 394, 729, 865, 1011, 1622, 2713, 2936, 2984 |
| FauI | CCCGC | 1 cut(s) | 319 |
| FblI | GTMKAC | 2 cut(s) | 72, 876 |
| Fnu4HI | GCNGC | 7 cut(s) | 53, 372, 1644, 1917, 2136, 2950, 2953 |
| FriOI | GRGCYC | 3 cut(s) | 2652, 2758, 2812 |
| Fsp4HI | GCNGC | 7 cut(s) | 53, 372, 1644, 1917, 2136, 2950, 2953 |
| FspBI | CTAG | 4 cut(s) | 479, 972, 1664, 1755 |
| GlaI | GCGC | 2 cut(s) | 56, 383 |
| GluI | GCNGC | 7 cut(s) | 53, 372, 1644, 1917, 2136, 2950, 2953 |
| GsuI | CTGGAG | 1 cut(s) | 2437 |
| HaeIII | GGCC | 1 cut(s) | 2810 |
| HapII | CCGG | 3 cut(s) | 21, 355, 2287 |
| HhaI | GCGC | 2 cut(s) | 57, 384 |
| Hin1II | CATG | 8 cut(s) | 398, 733, 869, 1015, 1626, 2717, 2940, 2988 |
| Hin6I | GCGC | 2 cut(s) | 55, 382 |
| HinP1I | GCGC | 2 cut(s) | 55, 382 |
| HpaII | CCGG | 3 cut(s) | 21, 355, 2287 |
| HphI | GGTGA | 9 cut(s) | 25, 35, 311, 828, 1043, 1265, 1421, 1533, 2126 |
| Hpy166II | GTNNAC | 8 cut(s) | 73, 514, 877, 1471, 1681, 1844, 2005, 2485 |
| Hpy8I | GTNNAC | 8 cut(s) | 73, 514, 877, 1471, 1681, 1844, 2005, 2485 |
| Hpy99I | CGWCG | 1 cut(s) | 772 |
| HpyCH4III | ACNGT | 7 cut(s) | 518, 1352, 1390, 1891, 2304, 2462, 2555 |
| HpyCH4IV | ACGT | 2 cut(s) | 2433, 2932 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 61, 2324, 2794, 2946 |
| HpyF3I | CTNAG | 4 cut(s) | 1434, 1533, 2139, 2159 |
| HpySE526I | ACGT | 2 cut(s) | 2433, 2932 |
| Hsp92II | CATG | 8 cut(s) | 398, 733, 869, 1015, 1626, 2717, 2940, 2988 |
| HspAI | GCGC | 2 cut(s) | 55, 382 |
| KflI | GGGWCCC | 1 cut(s) | 409 |
| Kpn2I | TCCGGA | 1 cut(s) | 2286 |
| Kzo9I | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| LmnI | GCTCC | 5 cut(s) | 69, 237, 1325, 2418, 2710 |
| Lsp1109I | GCAGC | 6 cut(s) | 64, 1655, 1903, 2122, 2939, 2961 |
| LweI | GCATC | 5 cut(s) | 14, 702, 1224, 2225, 2837 |
| MaeI | CTAG | 4 cut(s) | 479, 972, 1664, 1755 |
| MaeII | ACGT | 2 cut(s) | 2433, 2932 |
| MaeIII | GTNAC | 4 cut(s) | 23, 1075, 2066, 2411 |
| MalI | GATC | 7 cut(s) | 12, 419, 942, 1146, 1933, 1976, 2166 |
| MboI | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| MfeI | CAATTG | 1 cut(s) | 777 |
| MflI | RGATCY | 2 cut(s) | 1974, 2164 |
| MhlI | GDGCHC | 6 cut(s) | 66, 1137, 2652, 2692, 2758, 2812 |
| MlyI | GAGTC | 6 cut(s) | 183, 563, 898, 2098, 2339, 2990 |
| MmeI | TCCRAC | 3 cut(s) | 1800, 1852, 2002 |
| Mph1103I | ATGCAT | 1 cut(s) | 622 |
| MroI | TCCGGA | 1 cut(s) | 2286 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1049, 1425 |
| MslI | CAYNNNNRTG | 3 cut(s) | 399, 437, 2394 |
| MspA1I | CMGCKG | 1 cut(s) | 2952 |
| MspCI | CTTAAG | 1 cut(s) | 1376 |
| MspI | CCGG | 3 cut(s) | 21, 355, 2287 |
| MspR9I | CCNGG | 5 cut(s) | 355, 356, 406, 1004, 1088 |
| MunI | CAATTG | 1 cut(s) | 777 |
| Mva1269I | GAATGC | 3 cut(s) | 932, 1519, 1555 |
| MvaI | CCWGG | 3 cut(s) | 406, 1004, 1088 |
| MvnI | CGCG | 1 cut(s) | 594 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 61, 2324, 2794, 2946 |
| NciI | CCSGG | 2 cut(s) | 355, 356 |
| NdeII | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| NlaIII | CATG | 8 cut(s) | 398, 733, 869, 1015, 1626, 2717, 2940, 2988 |
| NlaIV | GGNNCC | 8 cut(s) | 410, 411, 1278, 2532, 2787, 2810, 2811, 2887 |
| NmuCI | GTSAC | 3 cut(s) | 23, 1075, 2066 |
| NsiI | ATGCAT | 1 cut(s) | 622 |
| NspI | RCATGY | 1 cut(s) | 2717 |
| PaeI | GCATGC | 1 cut(s) | 2717 |
| PaeR7I | CTCGAG | 1 cut(s) | 893 |
| PagI | TCATGA | 3 cut(s) | 729, 865, 1011 |
| PctI | GAATGC | 3 cut(s) | 932, 1519, 1555 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1049, 1425 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 827, 2049 |
| PkrI | GCNGC | 7 cut(s) | 54, 373, 1645, 1918, 2137, 2951, 2954 |
| PleI | GAGTC | 6 cut(s) | 183, 562, 897, 2097, 2338, 2989 |
| PpsI | GAGTC | 6 cut(s) | 183, 562, 897, 2097, 2338, 2989 |
| PpuMI | RGGWCCY | 1 cut(s) | 409 |
| Psp124BI | GAGCTC | 1 cut(s) | 2758 |
| Psp1406I | AACGTT | 1 cut(s) | 2932 |
| Psp5II | RGGWCCY | 1 cut(s) | 409 |
| Psp6I | CCWGG | 3 cut(s) | 404, 1002, 1086 |
| PspEI | GGTNACC | 1 cut(s) | 23 |
| PspGI | CCWGG | 3 cut(s) | 404, 1002, 1086 |
| PspN4I | GGNNCC | 8 cut(s) | 410, 411, 1278, 2532, 2787, 2810, 2811, 2887 |
| PspOMI | GGGCCC | 1 cut(s) | 2808 |
| PspPI | GGNCC | 5 cut(s) | 409, 1471, 2808, 2809, 2875 |
| PspPPI | RGGWCCY | 1 cut(s) | 409 |
| PstI | CTGCAG | 1 cut(s) | 1564 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2231, 2460 |
| PsuI | RGATCY | 2 cut(s) | 1974, 2164 |
| PvuII | CAGCTG | 1 cut(s) | 2952 |
| RsaI | GTAC | 3 cut(s) | 665, 1109, 2459 |
| RsaNI | GTAC | 3 cut(s) | 664, 1108, 2458 |
| RseI | CAYNNNNRTG | 3 cut(s) | 399, 437, 2394 |
| SacI | GAGCTC | 1 cut(s) | 2758 |
| SatI | GCNGC | 7 cut(s) | 53, 372, 1644, 1917, 2136, 2950, 2953 |
| Sau3AI | GATC | 7 cut(s) | 10, 417, 940, 1144, 1931, 1974, 2164 |
| Sau96I | GGNCC | 5 cut(s) | 409, 1471, 2808, 2809, 2875 |
| SchI | GAGTC | 6 cut(s) | 183, 563, 898, 2098, 2339, 2990 |
| ScrFI | CCNGG | 5 cut(s) | 355, 356, 406, 1004, 1088 |
| SduI | GDGCHC | 6 cut(s) | 66, 1137, 2652, 2692, 2758, 2812 |
| SfaNI | GCATC | 5 cut(s) | 14, 702, 1224, 2225, 2837 |
| SfcI | CTRYAG | 3 cut(s) | 40, 1560, 2300 |
| Sfr274I | CTCGAG | 1 cut(s) | 893 |
| SinI | GGWCC | 3 cut(s) | 409, 1471, 2875 |
| SlaI | CTCGAG | 1 cut(s) | 893 |
| SmaI | CCCGGG | 1 cut(s) | 356 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 399, 437, 2394 |
| SmlI | CTYRAG | 4 cut(s) | 893, 1229, 1297, 1376 |
| SmoI | CTYRAG | 4 cut(s) | 893, 1229, 1297, 1376 |
| SphI | GCATGC | 1 cut(s) | 2717 |
| SsiI | CCGC | 7 cut(s) | 312, 372, 594, 1899, 2660, 2860, 2988 |
| SspMI | CTAG | 4 cut(s) | 479, 972, 1664, 1755 |
| SstI | GAGCTC | 1 cut(s) | 2758 |
| StyD4I | CCNGG | 5 cut(s) | 353, 354, 404, 1002, 1086 |
| StyI | CCWWGG | 1 cut(s) | 2169 |
| TaaI | ACNGT | 7 cut(s) | 518, 1352, 1390, 1891, 2304, 2462, 2555 |
| TaiI | ACGT | 2 cut(s) | 2436, 2935 |
| TaqI | TCGA | 9 cut(s) | 90, 631, 767, 894, 2092, 2260, 2831, 2843, 2854 |
| TatI | WGTACW | 1 cut(s) | 1107 |
| TauI | GCSGC | 1 cut(s) | 374 |
| TscAI | CASTG | 8 cut(s) | 90, 219, 1075, 1357, 2007, 2203, 2560, 2692 |
| TseFI | GTSAC | 3 cut(s) | 23, 1075, 2066 |
| TseI | GCWGC | 6 cut(s) | 52, 1643, 1916, 2135, 2949, 2952 |
| Tsp45I | GTSAC | 3 cut(s) | 23, 1075, 2066 |
| TspGWI | ACGGA | 1 cut(s) | 785 |
| TspMI | CCCGGG | 1 cut(s) | 354 |
| TspRI | CASTG | 8 cut(s) | 90, 219, 1075, 1357, 2007, 2203, 2560, 2692 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 827, 2049 |
| Vha464I | CTTAAG | 1 cut(s) | 1376 |
| VpaK11BI | GGWCC | 3 cut(s) | 409, 1471, 2875 |
| XceI | RCATGY | 1 cut(s) | 2717 |
| XhoI | CTCGAG | 1 cut(s) | 893 |
| XmaI | CCCGGG | 1 cut(s) | 354 |
| XmiI | GTMKAC | 2 cut(s) | 72, 876 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1049, 1425 |
| XspI | CTAG | 4 cut(s) | 479, 972, 1664, 1755 |
| Zsp2I | ATGCAT | 1 cut(s) | 622 |