RLG00000026358

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005716
Physical Location & Seq
Forward (+)
2399685 .. 2400910
1226 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026358

Sequence Viewer

Length: 1110 bp
ATGGCGATGGCGGTCGATTCAAATTCCGGCGATCCAATCTCCGACTACGGCCGAACCCAGCGGATCGTGCTTCTAATCGACCTAAACCTACTTCTCCATCTCCAAGACCCAACCCCATTTCTCACCTCTCTCCTCTCCTCCATCAAATCCCTAACCTCCTTCCCTCCTCTCTCTGCGATGATGATGATCTGCGATCCTGCGACCGGTCTAATTTGGTCATCGAAATTTGTGAGTGAGTTCTTGAATGAGGGAGTGGGTGATGAGTGTTTGGGAGATTTGAATGGGTTTTGTGAGAGATTTCGAGGGGTTTTCGAGAACGTGGATGAGGCTTTTGGTAGTAGAGACATTCCATTGAGTTGGGTTGGGTTGATGGGGATTAGCTCCTCTGATTCGATTGTGCTTGGTTCGGCTCTTGTTCCGTTTGGTTTGATATATCCAGAGATTGGGGTTTCGTCAAAGAGTTTTGGGGATCATAGTAAGAAGGTTAGAGCACAATTGAATCTTGGAATATCAGATGTAATGGGGATGCCTTTGGAGTGCAAGTTTTGTGATCTTGAGTTGGCTGATTTGAAAATGTTGCCTAGAAGTAGAGCTGATGATGGTTTGTTTTCCGTGGAAAGCATGAAGTCGCAAACAAGAGGTCATGAGCTGAAGAGGCTGTTCTGGGGGAGTGTTGGCAATGGAGTGTCGAAGATTCAGGTTAAGGCTTTGCAGAGGGACAATGAGTTTGCGAAATTCAAGGGGCGGTTATCAGATCCGATTCTTGTCTATGAAGTTTCGGGTAGAGATGGAAAAGAAATAATTAAGGTTCTGGAAATGCTATCAGTGGAATTGGGCGAGTTTGTACCGAGGAAATTGGCGCCTGTTTGGCAGATTCTGTTGAGTTTTTTATACAGGGATGGCTGCTGGGCATTGGTGTCTATTTCAAATGATAGTGGTGTATCGCATACTGGAATCCTTAAGCCTTTTACAGTTTCTTCAGCTCTTCTGTTTATTTTGGATGAAGGATTTCACCCTCACAAAAAAGGGAATGCAATTGGTGCAGGGAATGTGGGTCAATCTCGTTCAAAGGTGAACAATGAGATATGCAAACTCGATGAAGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

40.44

Weight (kDa)

5.38

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 859
AccB7I CCANNNNNTGG 1 cut(s) 443
AciI CCGC 3 cut(s) 11, 61, 745
AclWI GGATC 5 cut(s) 26, 71, 188, 477, 749
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 3 cut(s) 22, 224, 734
AcuI CTGAAG 2 cut(s) 671, 963
AcyI GRCGYC 1 cut(s) 860
AfaI GTAC 1 cut(s) 846
AfiI CCNNNNNNNGG 2 cut(s) 203, 443
AflII CTTAAG 1 cut(s) 959
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 8 cut(s) 21, 244, 280, 499, 571, 739, 927, 1068
AluBI AGCT 4 cut(s) 381, 593, 649, 983
AluI AGCT 4 cut(s) 381, 593, 649, 983
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 5 cut(s) 26, 71, 188, 477, 749
AlwNI CAGNNNCTG 1 cut(s) 877
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 903
ApoI RAATTY 3 cut(s) 22, 224, 734
ArsI GACNNNNNNTTYG 4 cut(s) 625, 657, 710, 742
AsiGI ACCGGT 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 1 cut(s) 862
AsuHPI GGTGA 4 cut(s) 115, 269, 1004, 1084
BanI GGYRCC 1 cut(s) 859
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 890
BccI CCATC 6 cut(s) 105, 149, 364, 593, 782, 893
BceAI ACGGC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 863
BfrI CTTAAG 1 cut(s) 959
BglI GCCNNNNNGGC 1 cut(s) 868
BisI GCNGC 1 cut(s) 904
BlsI GCNGC 1 cut(s) 905
BmiI GGNNCC 1 cut(s) 861
BmsI GCATC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 860
BsaJI CCNNGG 2 cut(s) 612, 848
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 443
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 955
Bse3DI GCAATG 1 cut(s) 685
Bse8I GATNNNNATC 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 612, 848
BseGI GGATG 4 cut(s) 328, 531, 904, 1006
BseJI GATNNNNATC 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 203, 443
BseMI GCAATG 1 cut(s) 685
BseNI ACTGG 1 cut(s) 955
BseRI GAGGAG 4 cut(s) 122, 127, 156, 373
BseX3I CGGCCG 1 cut(s) 49
BseXI GCAGC 1 cut(s) 890
BseYI CCCAGC 2 cut(s) 57, 906
BsgI GTGCAG 1 cut(s) 1062
Bsh1285I CGRYCG 3 cut(s) 15, 52, 204
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 859
BshTI ACCGGT 1 cut(s) 203
BsiEI CGRYCG 3 cut(s) 15, 52, 204
BsiHKAI GWGCWC 1 cut(s) 493
BsiSI CCGG 2 cut(s) 27, 204
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 2 cut(s) 203, 443
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 731
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
BspACI CCGC 3 cut(s) 11, 61, 745
BspANI GGCC 1 cut(s) 51
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 861
BspPI GGATC 5 cut(s) 26, 71, 188, 477, 749
BspQI GCTCTTC 1 cut(s) 990
BspT107I GGYRCC 1 cut(s) 859
BspTI CTTAAG 1 cut(s) 959
BsrDI GCAATG 1 cut(s) 685
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 955
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 612, 848
BssMI GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
BssNI GRCGYC 1 cut(s) 860
Bst4CI ACNGT 1 cut(s) 973
Bst6I CTCTTC 2 cut(s) 647, 990
BstACI GRCGYC 1 cut(s) 860
BstAFI CTTAAG 1 cut(s) 959
BstAPI GCANNNNNTGC 1 cut(s) 1040
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 4 cut(s) 328, 531, 904, 1006
BstH2I RGCGCY 1 cut(s) 863
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 7 cut(s) 34, 66, 189, 196, 472, 553, 757
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
BstMCI CGRYCG 3 cut(s) 15, 52, 204
BstMWI GCNNNNNNNGC 4 cut(s) 67, 655, 868, 1040
BstV1I GCAGC 1 cut(s) 890
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 1 cut(s) 754
BstZI CGGCCG 1 cut(s) 49
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 612
BtgZI GCGATG 2 cut(s) 20, 191
BtsCI GGATG 4 cut(s) 328, 531, 904, 1006
BtsIMutI CAGTG 1 cut(s) 831
CaiI CAGNNNCTG 1 cut(s) 877
CciI TCATGA 1 cut(s) 643
CfoI GCGC 1 cut(s) 862
Cfr10I RCCGGY 1 cut(s) 203
Csp6I GTAC 1 cut(s) 845
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 2 cut(s) 622, 644
CviQI GTAC 1 cut(s) 845
DinI GGCGCC 1 cut(s) 861
DpnI GATC 7 cut(s) 33, 65, 188, 195, 471, 552, 756
DpnII GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
EaeI YGGCCR 1 cut(s) 49
EagI CGGCCG 1 cut(s) 49
Eam1104I CTCTTC 2 cut(s) 647, 990
EarI CTCTTC 2 cut(s) 647, 990
EclXI CGGCCG 1 cut(s) 49
Eco52I CGGCCG 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 671, 963
EgeI GGCGCC 1 cut(s) 861
EheI GGCGCC 1 cut(s) 861
FaeI CATG 2 cut(s) 625, 647
FaiI YATR 8 cut(s) 433, 474, 623, 645, 771, 892, 948, 1087
FaqI GGGAC 1 cut(s) 731
FatI CATG 2 cut(s) 621, 643
Fnu4HI GCNGC 1 cut(s) 904
FokI GGATG 4 cut(s) 335, 538, 911, 1013
Fsp4HI GCNGC 1 cut(s) 904
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 861
GluI GCNGC 1 cut(s) 904
GsaI CCCAGC 2 cut(s) 61, 910
HaeII RGCGCY 1 cut(s) 863
HaeIII GGCC 1 cut(s) 51
HapII CCGG 2 cut(s) 27, 204
HhaI GCGC 1 cut(s) 862
Hin1I GRCGYC 1 cut(s) 860
Hin1II CATG 2 cut(s) 625, 647
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HinfI GANTC 7 cut(s) 17, 389, 499, 694, 760, 874, 954
HpaII CCGG 2 cut(s) 27, 204
HphI GGTGA 4 cut(s) 115, 269, 1004, 1084
Hpy166II GTNNAC 1 cut(s) 1075
Hpy188I TCNGA 5 cut(s) 43, 388, 514, 754, 759
Hpy188III TCNNGA 6 cut(s) 241, 313, 437, 554, 644, 812
Hpy8I GTNNAC 1 cut(s) 1075
HpyAV CCTTC 3 cut(s) 169, 475, 998
HpyCH4III ACNGT 1 cut(s) 973
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 5 cut(s) 540, 712, 1034, 1043, 1089
HpyF10VI GCNNNNNNNGC 4 cut(s) 67, 655, 868, 1040
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 860
Hsp92II CATG 2 cut(s) 625, 647
HspAI GCGC 1 cut(s) 860
KasI GGCGCC 1 cut(s) 859
Kzo9I GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
LguI GCTCTTC 1 cut(s) 990
LmnI GCTCC 1 cut(s) 386
Lsp1109I GCAGC 1 cut(s) 890
LweI GCATC 1 cut(s) 516
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 318
MalI GATC 7 cut(s) 33, 65, 188, 195, 471, 552, 756
MboI GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
MboII GAAGA 4 cut(s) 664, 703, 969, 977
MfeI CAATTG 2 cut(s) 494, 1035
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 9 cut(s) 22, 210, 224, 494, 734, 801, 830, 854, 1035
Mly113I GGCGCC 1 cut(s) 860
MmeI TCCRAC 1 cut(s) 66
MroXI GAANNNNTTC 1 cut(s) 1008
MseI TTAA 3 cut(s) 702, 804, 960
MspA1I CMGCKG 1 cut(s) 61
MspCI CTTAAG 1 cut(s) 959
MspI CCGG 2 cut(s) 27, 204
MunI CAATTG 2 cut(s) 494, 1035
Mva1269I GAATGC 1 cut(s) 1036
MwoI GCNNNNNNNGC 4 cut(s) 67, 655, 868, 1040
NarI GGCGCC 1 cut(s) 860
NdeII GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
NlaIII CATG 2 cut(s) 625, 647
NlaIV GGNNCC 1 cut(s) 861
PagI TCATGA 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 990
PctI GAATGC 1 cut(s) 1036
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 7 cut(s) 17, 389, 499, 694, 760, 874, 954
PflMI CCANNNNNTGG 1 cut(s) 443
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 905
PluTI GGCGCC 1 cut(s) 863
PspFI CCCAGC 2 cut(s) 57, 906
PspN4I GGNNCC 1 cut(s) 861
PstNI CAGNNNCTG 1 cut(s) 877
PsuI RGATCY 1 cut(s) 754
RsaI GTAC 1 cut(s) 846
RsaNI GTAC 1 cut(s) 845
SapI GCTCTTC 1 cut(s) 990
SaqAI TTAA 3 cut(s) 702, 804, 960
SatI GCNGC 1 cut(s) 904
Sau3AI GATC 7 cut(s) 31, 63, 186, 193, 469, 550, 754
SduI GDGCHC 1 cut(s) 493
SfaNI GCATC 1 cut(s) 516
SfoI GGCGCC 1 cut(s) 861
SmlI CTYRAG 2 cut(s) 554, 959
SmoI CTYRAG 2 cut(s) 554, 959
Sse9I AATT 9 cut(s) 22, 210, 224, 494, 734, 801, 830, 854, 1035
SsiI CCGC 3 cut(s) 11, 61, 745
SspDI GGCGCC 1 cut(s) 859
SspMI CTAG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 973
TaiI ACGT 1 cut(s) 321
TaqI TCGA 8 cut(s) 15, 78, 221, 301, 312, 392, 689, 1095
TasI AATT 9 cut(s) 22, 210, 224, 494, 734, 801, 830, 854, 1035
TfiI GAWTC 7 cut(s) 17, 389, 499, 694, 760, 874, 954
Tru1I TTAA 3 cut(s) 702, 804, 960
Tru9I TTAA 3 cut(s) 702, 804, 960
TscAI CASTG 1 cut(s) 831
TseI GCWGC 1 cut(s) 903
TspDTI ATGAA 3 cut(s) 638, 786, 1017
TspGWI ACGGA 2 cut(s) 408, 601
TspRI CASTG 1 cut(s) 831
Van91I CCANNNNNTGG 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 959
XapI RAATTY 3 cut(s) 22, 224, 734
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.