Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005716

Physical Location & Seq

Genomic Coordinates Reverse (-)

66204976 .. 66205467

Gene Structure 492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG439100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAGTCGCAAACAAGAGGTCATGAGCTGAAGAGGCTGTTCTGGGGAGTGTCGAAGATTCAGGTTAAGGCTTTGCAGAGGGACAATGAGTTTGTGAAATTCAAGGGGTGGTTATCAGATCCGATTCTTGTCTATGAAGTTTTGGGTAGAGATGGAAAAGAAGTTTCTGGTGGTTTTTTTGTAGATAAGGTTCTGGAAATGCTATCAGTGGAATTGGGTGAGTTTGTACTGAGGAAATTGGCGCCTGTTTGGCAGATTCTGTTGAGTTTTTTATACAGGGACGGCTGCTGGGCATTGGTGTCTATTTCAAATGATAGTGGTGTATCGCATACTGGAATCCTTAAGCCTTTTACAGTTTCTTCAGCTCTTCTGTTTATTTTGGATGAAGGATTTCACCCTCACAAAAAAGGGAATGGCATTGGTGCAGGGAATGTGGGTCAATCTCGTCCAAAGGTGAACAATGAGATATGCAAACTCGATGAAGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.28

Weight (kDa)

8.52

Isoelectric Point (pI)

20.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52950 AT5G52950
fragaria_vesca	FvH4_7g30790
malus_domestica	MD01G1213200.v1.1 MD01G1213400.v1.1 MD07G1283200.v1.1
prunus_persica	Prupe.2G305400_v2.0.a1
pyrus_communis	pycom01g22430 pycom07g25730
rosa_chinensis	RchiOBHm_Chr1g0379731
rosa_laevigata	RLG00000026358 RLG00000026362
rosa_multiflora	Rmu_co8427163.1_g000001 Rmu_sc0013028.1_g000010 Rmu_sc0014259.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279930
rosa_rugosa	Rorug01G0415100
rosa_samantha	Rh1AG438600 Rh1AG439100 Rh1BG395100 Rh1CG408200 Rh1CG408400 Rh1DG425500 Rh1DG426000 Rh6CG162800 Rh6DG154400 Rh7CG443300
rosa_wichuraiana	Rw1G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	2 cut(s)	50, 345
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	1 cut(s)	228
AflII	CTTAAG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	103, 309
AluBI	AGCT	2 cut(s)	28, 365
AluI	AGCT	2 cut(s)	28, 365
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	285
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	3 cut(s)	36, 74, 106
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	244
AsuHPI	GGTGA	3 cut(s)	230, 386, 466
BanI	GGYRCC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	272
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	1 cut(s)	298
BfoI	RGCGCY	1 cut(s)	245
BfrI	CTTAAG	1 cut(s)	341
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	337
BseGI	GGATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	272
BseYI	CCCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	444
BshNI	GGYRCC	1 cut(s)	241
BslFI	GGGAC	2 cut(s)	95, 293
BsmFI	GGGAC	2 cut(s)	95, 293
Bsp143I	GATC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	222
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	241
BspTI	CTTAAG	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	337
BssMI	GATC	1 cut(s)	118
BssNI	GRCGYC	1 cut(s)	242
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	26, 372
BstACI	GRCGYC	1 cut(s)	242
BstAFI	CTTAAG	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	388
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 250
BstV1I	GCAGC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	118
BstYI	RGATCY	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	259
CciI	TCATGA	1 cut(s)	22
CfoI	GCGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	6 cut(s)	28, 37, 71, 285, 346, 365
CviKI_1	RGCY	6 cut(s)	28, 37, 71, 285, 346, 365
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	1 cut(s)	230
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	26, 372
EarI	CTCTTC	2 cut(s)	26, 372
Eco57I	CTGAAG	2 cut(s)	50, 345
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
FaeI	CATG	1 cut(s)	26
FaiI	YATR	5 cut(s)	24, 135, 274, 330, 469
FaqI	GGGAC	2 cut(s)	95, 293
FatI	CATG	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	1 cut(s)	286
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	1 cut(s)	286
GsaI	CCCAGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	245
HhaI	GCGC	1 cut(s)	244
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	4 cut(s)	58, 124, 256, 336
HphI	GGTGA	3 cut(s)	230, 386, 466
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	2 cut(s)	118, 123
Hpy188III	TCNNGA	2 cut(s)	23, 194
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	3 cut(s)	76, 425, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 250
HpyF3I	CTNAG	1 cut(s)	230
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	242
KasI	GGCGCC	1 cut(s)	241
Kzo9I	GATC	1 cut(s)	118
LguI	GCTCTTC	1 cut(s)	372
LpnPI	CCDG	9 cut(s)	28, 47, 153, 179, 258, 262, 274, 318, 411
Lsp1109I	GCAGC	1 cut(s)	272
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	4 cut(s)	43, 67, 351, 359
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	3 cut(s)	98, 212, 236
Mly113I	GGCGCC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	11, 27, 72, 225, 408
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	66, 342
MspCI	CTTAAG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	34, 250
NarI	GGCGCC	1 cut(s)	242
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	243
PagI	TCATGA	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	58, 124, 256, 336
PkrI	GCNGC	1 cut(s)	287
PluTI	GGCGCC	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	243
PsrI	GAACNNNNNNTAC	2 cut(s)	174, 206
PstNI	CAGNNNCTG	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	118
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	2 cut(s)	66, 342
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	1 cut(s)	118
SetI	ASST	6 cut(s)	22, 30, 66, 192, 367, 456
SfoI	GGCGCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	3 cut(s)	98, 212, 236
SspDI	GGCGCC	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	53, 477
TasI	AATT	3 cut(s)	98, 212, 236
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	4 cut(s)	58, 124, 256, 336
Tru1I	TTAA	2 cut(s)	66, 342
Tru9I	TTAA	2 cut(s)	66, 342
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	1 cut(s)	285
TspDTI	ATGAA	3 cut(s)	17, 150, 399
TspRI	CASTG	1 cut(s)	213
Vha464I	CTTAAG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.