Rh1DG426000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
63915415 .. 63915990
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG426000.1

Sequence Viewer

Length: 576 bp
ATGGGTTTTGTGAGAGATTTCGAGAACGTGGATGAGGCATTTGGTAGTAGAGACATTCAATTGAGTTGGGTTGATGTGAGGTATGAATTGGAGTGTGGTGAGAATGAGGCTGGATTGAAATGTGGTTTTTTCGAAAGGGGGATTAGCTCCTCTGATTCGATTGTGCTTGGTTCGGCTCTTGTTCCGTTTGGTTTGATATATCCAGAGATTGGGGTTTCGTCGAAGATTTTTGGGGATCATAGTAAGAAGGTTAGAGCACAATTGAATCTTGGAATATCAGATGTAATGGGGATGCCTTTGGAGTGCAAGTTTTGTGATCTTGAGTTGGCTGGTTTGAAAATGTTGCCTGATGATGGTTTGTTTTCCGTGGAAAGCATGAAGTCGCAAGCAAGAGGTCATGAGCTGAAGAGGCTGTTCTGGGGAAGTGTTGGCAATGGAGTGTCGAAGATTCAGGTTAAGGCTTTGCAGAGGGACAATGAGTTTGCGAAATTCAAGGGGCGGTTATCAGATCCGATTGTTGTCTATGAAGTTTCGGGTAGAGATGGAAAAGAAGTTTCTGGTGGTTTTTTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.03

Weight (kDa)

5.18

Isoelectric Point (pI)

21.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 1 cut(s) 499
AclWI GGATC 2 cut(s) 243, 503
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 209, 353
AgsI TTSAA 5 cut(s) 59, 118, 265, 337, 493
AluBI AGCT 2 cut(s) 147, 403
AluI AGCT 2 cut(s) 147, 403
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 2 cut(s) 243, 503
ApoI RAATTY 1 cut(s) 488
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
AsuHPI GGTGA 1 cut(s) 110
AsuII TTCGAA 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 259
BccI CCATC 2 cut(s) 347, 536
BcoDI GTCTC 1 cut(s) 45
BmsI GCATC 1 cut(s) 282
Bpu14I TTCGAA 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 366
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 353
Bse3DI GCAATG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 2 cut(s) 37, 297
BseLI CCNNNNNNNGG 2 cut(s) 209, 353
BseMI GCAATG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 259
BslFI GGGAC 1 cut(s) 485
BslI CCNNNNNNNGG 2 cut(s) 209, 353
BsmAI GTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 485
Bsp119I TTCGAA 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 3 cut(s) 235, 316, 508
BspACI CCGC 1 cut(s) 499
BspHI TCATGA 1 cut(s) 397
BspPI GGATC 2 cut(s) 243, 503
BspT104I TTCGAA 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 3 cut(s) 235, 316, 508
Bst6I CTCTTC 1 cut(s) 401
BstBI TTCGAA 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 387
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 2 cut(s) 37, 297
BstKTI GATC 3 cut(s) 238, 319, 511
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 3 cut(s) 235, 316, 508
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 2 cut(s) 37, 297
Cac8I GCNNGC 1 cut(s) 387
CciI TCATGA 1 cut(s) 397
CviAII CATG 2 cut(s) 376, 398
CviJI RGCY 7 cut(s) 110, 147, 176, 329, 403, 412, 461
CviKI_1 RGCY 7 cut(s) 110, 147, 176, 329, 403, 412, 461
DpnI GATC 3 cut(s) 237, 318, 510
DpnII GATC 3 cut(s) 235, 316, 508
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
Eco57I CTGAAG 1 cut(s) 425
FaeI CATG 2 cut(s) 379, 401
FaiI YATR 6 cut(s) 84, 199, 240, 377, 399, 525
FaqI GGGAC 1 cut(s) 485
FatI CATG 2 cut(s) 375, 397
FokI GGATG 2 cut(s) 44, 304
Hin1II CATG 2 cut(s) 379, 401
HinfI GANTC 3 cut(s) 155, 265, 448
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 4 cut(s) 154, 280, 508, 513
Hpy188III TCNNGA 4 cut(s) 22, 203, 320, 398
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 306, 466
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 379, 401
Kzo9I GATC 3 cut(s) 235, 316, 508
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 96, 216, 315, 360, 403, 437, 543
LweI GCATC 1 cut(s) 282
MaeII ACGT 1 cut(s) 27
MalI GATC 3 cut(s) 237, 318, 510
MboI GATC 3 cut(s) 235, 316, 508
MboII GAAGA 3 cut(s) 235, 418, 457
MfeI CAATTG 2 cut(s) 59, 260
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 4 cut(s) 59, 86, 260, 488
MnlI CCTC 7 cut(s) 28, 72, 100, 160, 386, 402, 462
MseI TTAA 1 cut(s) 456
MunI CAATTG 2 cut(s) 59, 260
MwoI GCNNNNNNNGC 1 cut(s) 409
NdeII GATC 3 cut(s) 235, 316, 508
NlaIII CATG 2 cut(s) 379, 401
NspV TTCGAA 1 cut(s) 132
PagI TCATGA 1 cut(s) 397
PfeI GAWTC 3 cut(s) 155, 265, 448
PflMI CCANNNNNTGG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 508
SaqAI TTAA 1 cut(s) 456
Sau3AI GATC 3 cut(s) 235, 316, 508
SduI GDGCHC 1 cut(s) 259
SetI ASST 7 cut(s) 30, 83, 149, 252, 397, 405, 456
SfaNI GCATC 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 4 cut(s) 59, 86, 260, 488
SsiI CCGC 1 cut(s) 499
TaiI ACGT 1 cut(s) 30
TaqI TCGA 5 cut(s) 21, 132, 158, 221, 443
TasI AATT 4 cut(s) 59, 86, 260, 488
TfiI GAWTC 3 cut(s) 155, 265, 448
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TspDTI ATGAA 3 cut(s) 99, 392, 540
TspGWI ACGGA 2 cut(s) 174, 355
Van91I CCANNNNNTGG 1 cut(s) 209
XapI RAATTY 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.