Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8427163.1

Orthogroup ID

OG0005716

Physical Location & Seq

Genomic Coordinates Reverse (-)

509 .. 1312

Gene Structure 804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8427163.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgaacaatgagatatgcaaacccgacgttgatttgaacaacttgtgcgggtcgcaaactggatctaataagcattctgcagagattgatggaaagaagaaaagtagcaaaagaaattcacattcactccaagacctcacctggagtgctttctgtaaggcagcatttgaatattcagacttacatttggaagaggtttactttgccaggcaacgcagcatctcaaaaaagttgaaatttctgaaatgctggatgaaacagataaaaaaagtgaagtatccaataatggaggagtccaagacgcaccaggaaaaccaaaaagagatgggcaataggttggatgtgttgcaccaagagagcgaacagccgatgtcatcatcgggttcagctggagaaaattctttgactgtggcttttggagtacaggatgaagctgctcaggaatatagattagaaacctcggaatcctttttcagtaatttctccaataagatccgacaagggcttgaatctgaagcagtagacttgggggctttcgcacatcggcttgtgagtcaatctatatctttgttgaatcaaaagcatagcacaacaagcccttcagagaatcaaactcttgtaaaatctgacaatattgatgatttggttgccgccgagctgttaaaacttttactcagagatcccaaggatatggttgcaaggcacaaaagctatgatccatcttttcaagcatctgatccaggatctgaaggatttacttcagaaataatagttcgagagtatcctttcacatttatcacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

267

Amino Acids

30.16

Weight (kDa)

5.94

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52950 AT5G52950
fragaria_vesca	FvH4_7g30790
malus_domestica	MD01G1213200.v1.1 MD01G1213400.v1.1 MD07G1283200.v1.1
prunus_persica	Prupe.2G305400_v2.0.a1
pyrus_communis	pycom01g22430 pycom07g25730
rosa_chinensis	RchiOBHm_Chr1g0379731
rosa_laevigata	RLG00000026358 RLG00000026362
rosa_multiflora	Rmu_co8427163.1_g000001 Rmu_sc0013028.1_g000010 Rmu_sc0014259.1_g000002
rosa_roxburghii	Rroxscaffold_4G00279930
rosa_rugosa	Rorug01G0415100
rosa_samantha	Rh1AG438600 Rh1AG439100 Rh1BG395100 Rh1CG408200 Rh1CG408400 Rh1DG425500 Rh1DG426000 Rh6CG162800 Rh6DG154400 Rh7CG443300
rosa_wichuraiana	Rw1G038200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	522
AciI	CCGC	2 cut(s)	48, 651
AclWI	GGATC	6 cut(s)	70, 487, 674, 710, 731, 751
AcsI	RAATTY	3 cut(s)	115, 236, 397
AcuI	CTGAAG	4 cut(s)	534, 585, 744, 768
AfaI	GTAC	1 cut(s)	423
AgsI	TTSAA	6 cut(s)	37, 170, 235, 509, 574, 728
AjnI	CCWGG	4 cut(s)	140, 206, 306, 739
AluBI	AGCT	4 cut(s)	389, 434, 658, 711
AluI	AGCT	4 cut(s)	389, 434, 658, 711
AlwI	GGATC	6 cut(s)	70, 487, 674, 710, 731, 751
AlwNI	CAGNNNCTG	1 cut(s)	746
ApeKI	GCWGC	3 cut(s)	161, 216, 434
ApoI	RAATTY	3 cut(s)	115, 236, 397
AsuHPI	GGTGA	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	173, 228, 421
BccI	CCATC	3 cut(s)	83, 319, 727
BciT130I	CCWGG	4 cut(s)	142, 208, 308, 741
BciVI	GTATCC	2 cut(s)	288, 792
BfmI	CTRYAG	1 cut(s)	78
BfuI	GTATCC	2 cut(s)	288, 792
BisI	GCNGC	4 cut(s)	162, 217, 435, 651
BlsI	GCNGC	4 cut(s)	163, 218, 436, 652
Bme1390I	CCNGG	4 cut(s)	142, 208, 308, 741
BmrFI	CCNGG	4 cut(s)	142, 208, 308, 741
BmsI	GCATC	2 cut(s)	228, 740
BpmI	CTGGAG	2 cut(s)	163, 411
Bpu10I	CCTNAGC	1 cut(s)	438
BsaJI	CCNNGG	2 cut(s)	459, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	4 cut(s)	142, 208, 308, 741
BseDI	CCNNGG	2 cut(s)	459, 684
BseGI	GGATG	3 cut(s)	258, 346, 433
BseMII	CTCAG	2 cut(s)	452, 688
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	173, 228, 421
BsmI	GAATGC	1 cut(s)	73
Bsp143I	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
BspACI	CCGC	2 cut(s)	48, 651
BspCNI	CTCAG	2 cut(s)	451, 687
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	6 cut(s)	70, 487, 674, 710, 731, 751
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	459, 684
BssMI	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	4 cut(s)	142, 208, 308, 741
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	186
BstDEI	CTNAG	2 cut(s)	438, 674
BstF5I	GGATG	3 cut(s)	258, 346, 433
BstKTI	GATC	6 cut(s)	65, 495, 682, 718, 739, 746
BstMBI	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
BstMWI	GCNNNNNNNGC	1 cut(s)	594
BstNI	CCWGG	4 cut(s)	142, 208, 308, 741
BstSCI	CCNGG	4 cut(s)	140, 206, 306, 739
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	173, 228, 421
BstX2I	RGATCY	4 cut(s)	62, 492, 679, 743
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	4 cut(s)	62, 492, 679, 743
BsuI	GTATCC	2 cut(s)	288, 792
BtsCI	GGATG	3 cut(s)	258, 346, 433
CaiI	CAGNNNCTG	1 cut(s)	746
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	422
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	2 cut(s)	438, 674
DpnI	GATC	6 cut(s)	64, 494, 681, 717, 738, 745
DpnII	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	684
Eco57I	CTGAAG	4 cut(s)	534, 585, 744, 768
EcoRII	CCWGG	4 cut(s)	140, 206, 306, 739
EcoT14I	CCWWGG	1 cut(s)	684
ErhI	CCWWGG	1 cut(s)	684
FaiI	YATR	6 cut(s)	16, 447, 563, 585, 692, 714
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	522
Fnu4HI	GCNGC	4 cut(s)	162, 217, 435, 651
FokI	GGATG	3 cut(s)	265, 353, 440
Fsp4HI	GCNGC	4 cut(s)	162, 217, 435, 651
GluI	GCNGC	4 cut(s)	162, 217, 435, 651
GsuI	CTGGAG	2 cut(s)	163, 411
HgaI	GACGC	1 cut(s)	310
HinfI	GANTC	6 cut(s)	293, 464, 509, 553, 574, 607
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	199, 523
Hpy188III	TCNNGA	2 cut(s)	440, 776
Hpy8I	GTNNAC	2 cut(s)	199, 523
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	609, 743
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	4 cut(s)	18, 80, 349, 698
HpyF10VI	GCNNNNNNNGC	1 cut(s)	594
HpyF3I	CTNAG	2 cut(s)	438, 674
HpySE526I	ACGT	1 cut(s)	27
Kzo9I	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
Lsp1109I	GCAGC	3 cut(s)	173, 228, 421
LweI	GCATC	2 cut(s)	228, 740
MaeII	ACGT	1 cut(s)	27
MalI	GATC	6 cut(s)	64, 494, 681, 717, 738, 745
MboI	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
MboII	GAAGA	2 cut(s)	109, 203
MflI	RGATCY	4 cut(s)	62, 492, 679, 743
MluCI	AATT	4 cut(s)	115, 236, 397, 478
MlyI	GAGTC	2 cut(s)	302, 562
MmeI	TCCRAC	2 cut(s)	318, 520
MnlI	CCTC	4 cut(s)	146, 187, 283, 469
MseI	TTAA	2 cut(s)	662, 802
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	4 cut(s)	142, 208, 308, 741
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	4 cut(s)	142, 208, 308, 741
MwoI	GCNNNNNNNGC	1 cut(s)	594
NdeII	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
NmeAIII	GCCGAG	1 cut(s)	679
PctI	GAATGC	1 cut(s)	73
PfeI	GAWTC	4 cut(s)	464, 509, 574, 607
PfoI	TCCNGGA	1 cut(s)	739
PkrI	GCNGC	4 cut(s)	163, 218, 436, 652
PleI	GAGTC	2 cut(s)	301, 561
PpsI	GAGTC	2 cut(s)	301, 561
Psp6I	CCWGG	4 cut(s)	140, 206, 306, 739
PspGI	CCWGG	4 cut(s)	140, 206, 306, 739
PstI	CTGCAG	1 cut(s)	82
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	4 cut(s)	62, 492, 679, 743
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	662, 802
SatI	GCNGC	4 cut(s)	162, 217, 435, 651
Sau3AI	GATC	6 cut(s)	62, 492, 679, 715, 736, 743
SchI	GAGTC	2 cut(s)	302, 562
ScrFI	CCNGG	4 cut(s)	142, 208, 308, 741
SfaNI	GCATC	2 cut(s)	228, 740
SfcI	CTRYAG	1 cut(s)	78
Sse9I	AATT	4 cut(s)	115, 236, 397, 478
SsiI	CCGC	2 cut(s)	48, 651
SspI	AATATT	2 cut(s)	173, 634
StyD4I	CCNGG	4 cut(s)	140, 206, 306, 739
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	775
TasI	AATT	4 cut(s)	115, 236, 397, 478
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	653
TfiI	GAWTC	4 cut(s)	464, 509, 574, 607
Tru1I	TTAA	2 cut(s)	662, 802
Tru9I	TTAA	2 cut(s)	662, 802
TseI	GCWGC	3 cut(s)	161, 216, 434
TspDTI	ATGAA	3 cut(s)	17, 269, 444
XapI	RAATTY	3 cut(s)	115, 236, 397
XmiI	GTMKAC	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.